Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00545

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
106,300	-		MMP_RS00540	0.34	-0.6
106,300	-		MMP_RS00540	0.34	+1.5
106,302	-		MMP_RS00540	0.34	+0.4
106,706	-		MMP_RS00540	0.68	+1.5
106,706	-		MMP_RS00540	0.68	+0.3
106,724	+		MMP_RS00540	0.70	-2.4
106,997	+				-1.6
107,145	-				+1.4
107,148	+				-0.1
107,155	+				+1.4
107,167	+				+0.5
107,178	+				-0.8
107,181	-				-0.5
107,181	-				-0.1
107,181	-				+0.2
107,182	+				-1.0
107,186	-				+0.6
107,218	-				+0.9
107,219	+				-1.5
107,292	-		MMP_RS00545	0.15	+0.7
107,292	-		MMP_RS00545	0.15	+1.6
107,529	+		MMP_RS00545	0.59	+1.3
107,559	+		MMP_RS00545	0.64	+0.9
107,597	+		MMP_RS00545	0.71	-3.1
107,974	-				+1.1
107,975	+				-0.7
107,979	+				+0.6
107,998	-				+0.6
108,033	+				+0.4
108,052	-				+1.1
108,062	-				-0.1
108,063	+				+0.0
108,076	-				-0.2
108,076	-				-0.5
108,080	-				-2.6
108,081	+				-3.3
108,083	+				+0.4
108,157	-				-0.1
108,157	-				+0.5
108,157	-				+0.4
108,158	+				+1.2
108,477	-		MMP_RS00555	0.30	-0.4
108,477	-		MMP_RS00555	0.30	-0.3
108,477	-		MMP_RS00555	0.30	+1.3
108,477	-		MMP_RS00555	0.30	+1.6
108,478	+		MMP_RS00555	0.31	+0.5
108,602	-		MMP_RS00555	0.41	-0.8
108,632	+		MMP_RS00555	0.44	-3.6
108,635	-		MMP_RS00555	0.44	+1.0
108,638	+		MMP_RS00555	0.44	-0.2
108,658	+		MMP_RS00555	0.46	-0.5