Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00515 and MMP_RS00520 are separated by 100 nucleotides MMP_RS00520 and MMP_RS00525 are separated by 48 nucleotides MMP_RS00525 and MMP_RS00530 are separated by 85 nucleotides MMP_RS00530 and MMP_RS00535 are separated by 21 nucleotides
MMP_RS00515: MMP_RS00515 - DUF655 domain-containing protein, at 101,838 to 102,422
_RS00515
MMP_RS00520: MMP_RS00520 - RNA polymerase Rpb4 family protein, at 102,523 to 102,846
_RS00520
MMP_RS00525: MMP_RS00525 - 50S ribosomal protein L21e, at 102,895 to 103,188
_RS00525
MMP_RS00530: MMP_RS00530 - tRNA pseudouridine(54/55) synthase Pus10, at 103,274 to 104,686
_RS00530
MMP_RS00535: MMP_RS00535 - TIGR00375 family protein, at 104,708 to 105,892
_RS00535
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 102.335 kb on - strand, within MMP_RS00515 at 102.373 kb on - strand at 102.379 kb on - strand at 102.454 kb on + strand at 102.460 kb on + strand at 102.463 kb on - strand at 102.463 kb on - strand at 102.479 kb on - strand at 102.541 kb on - strand at 102.622 kb on - strand, within MMP_RS00520 at 102.706 kb on - strand, within MMP_RS00520 at 102.758 kb on + strand, within MMP_RS00520 at 103.258 kb on - strand at 103.296 kb on - strand at 103.393 kb on - strand at 103.446 kb on - strand, within MMP_RS00530 at 103.475 kb on + strand, within MMP_RS00530 at 103.476 kb on - strand, within MMP_RS00530 at 103.766 kb on - strand, within MMP_RS00530 at 103.905 kb on - strand, within MMP_RS00530 at 103.906 kb on + strand, within MMP_RS00530 at 103.906 kb on + strand, within MMP_RS00530 at 104.001 kb on - strand, within MMP_RS00530 at 104.006 kb on + strand, within MMP_RS00530 at 104.006 kb on + strand, within MMP_RS00530 at 104.038 kb on - strand, within MMP_RS00530 at 104.446 kb on + strand, within MMP_RS00530 at 104.608 kb on - strand at 104.673 kb on - strand at 104.674 kb on + strand at 104.674 kb on + strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.679 kb on + strand at 104.679 kb on + strand at 104.679 kb on + strand at 104.687 kb on + strand at 104.687 kb on + strand at 104.688 kb on - strand at 104.716 kb on + strand at 104.727 kb on - strand at 104.727 kb on - strand at 104.727 kb on - strand at 104.728 kb on + strand at 104.728 kb on + strand at 104.728 kb on + strand at 104.731 kb on - strand at 104.732 kb on + strand at 104.744 kb on - strand at 104.750 kb on + strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.762 kb on + strand at 104.762 kb on + strand at 104.762 kb on + strand at 104.765 kb on - strand at 104.765 kb on - strand at 104.766 kb on + strand at 104.766 kb on + strand at 104.767 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.783 kb on + strand at 104.793 kb on + strand at 104.947 kb on - strand, within MMP_RS00535 at 104.947 kb on - strand, within MMP_RS00535
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 102,335 - MMP_RS00515 0.85 -0.6 102,373 - -2.3 102,379 - +0.1 102,454 + +0.0 102,460 + +1.1 102,463 - +0.3 102,463 - -2.4 102,479 - +0.8 102,541 - -0.9 102,622 - MMP_RS00520 0.31 +1.3 102,706 - MMP_RS00520 0.56 -0.2 102,758 + MMP_RS00520 0.73 -0.3 103,258 - -0.3 103,296 - +0.8 103,393 - +0.3 103,446 - MMP_RS00530 0.12 +1.1 103,475 + MMP_RS00530 0.14 -0.2 103,476 - MMP_RS00530 0.14 +1.1 103,766 - MMP_RS00530 0.35 +0.7 103,905 - MMP_RS00530 0.45 +2.6 103,906 + MMP_RS00530 0.45 +0.9 103,906 + MMP_RS00530 0.45 +0.5 104,001 - MMP_RS00530 0.51 +2.7 104,006 + MMP_RS00530 0.52 +1.8 104,006 + MMP_RS00530 0.52 +1.0 104,038 - MMP_RS00530 0.54 -0.7 104,446 + MMP_RS00530 0.83 -1.3 104,608 - +0.9 104,673 - +1.2 104,674 + -2.8 104,674 + -0.1 104,678 - -2.4 104,678 - -1.5 104,678 - +1.3 104,678 - +1.2 104,679 + +1.3 104,679 + +0.1 104,679 + -0.0 104,687 + +1.2 104,687 + +2.0 104,688 - +2.0 104,716 + -2.1 104,727 - -1.7 104,727 - +1.4 104,727 - -1.5 104,728 + -1.9 104,728 + +1.5 104,728 + +2.5 104,731 - -1.6 104,732 + +2.1 104,744 - -0.3 104,750 + -1.2 104,761 - -2.5 104,761 - +1.0 104,761 - +0.7 104,761 - -2.9 104,761 - -1.7 104,762 + +0.6 104,762 + -0.6 104,762 + -1.1 104,765 - -0.0 104,765 - +1.0 104,766 + +0.9 104,766 + +1.4 104,767 - +1.3 104,782 - -1.5 104,782 - +0.0 104,782 - -3.1 104,782 - +2.2 104,782 - +0.7 104,783 + +1.6 104,793 + -3.3 104,947 - MMP_RS00535 0.20 +1.3 104,947 - MMP_RS00535 0.20 +0.2
Or see this region's nucleotide sequence