Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00375 and MMP_RS00380 are separated by 103 nucleotides MMP_RS00380 and MMP_RS00385 are separated by 201 nucleotides MMP_RS00385 and MMP_RS00390 are separated by 28 nucleotides
MMP_RS00375: MMP_RS00375 - ammonium transporter, at 77,116 to 78,342
_RS00375
MMP_RS00380: MMP_RS00380 - P-II family nitrogen regulator, at 78,446 to 78,784
_RS00380
MMP_RS00385: MMP_RS00385 - P-II family nitrogen regulator, at 78,986 to 79,324
_RS00385
MMP_RS00390: MMP_RS00390 - ammonium transporter, at 79,353 to 80,588
_RS00390
Position (kb) 78
79 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 77.535 kb on + strand, within MMP_RS00375 at 77.565 kb on + strand, within MMP_RS00375 at 77.695 kb on + strand, within MMP_RS00375 at 77.829 kb on - strand, within MMP_RS00375 at 77.830 kb on + strand, within MMP_RS00375 at 77.830 kb on + strand, within MMP_RS00375 at 77.841 kb on + strand, within MMP_RS00375 at 77.844 kb on + strand, within MMP_RS00375 at 77.912 kb on - strand, within MMP_RS00375 at 77.913 kb on + strand, within MMP_RS00375 at 77.945 kb on - strand, within MMP_RS00375 at 77.975 kb on - strand, within MMP_RS00375 at 77.984 kb on - strand, within MMP_RS00375 at 78.068 kb on - strand, within MMP_RS00375 at 78.165 kb on + strand, within MMP_RS00375 at 78.174 kb on + strand, within MMP_RS00375 at 78.273 kb on - strand at 78.372 kb on + strand at 78.375 kb on - strand at 78.376 kb on + strand at 78.378 kb on - strand at 78.378 kb on - strand at 78.378 kb on - strand at 78.379 kb on + strand at 78.381 kb on - strand at 78.381 kb on - strand at 78.381 kb on - strand at 78.382 kb on + strand at 78.382 kb on + strand at 78.382 kb on + strand at 78.382 kb on + strand at 78.384 kb on + strand at 78.617 kb on + strand, within MMP_RS00380 at 78.641 kb on + strand, within MMP_RS00380 at 78.663 kb on - strand, within MMP_RS00380 at 78.723 kb on - strand, within MMP_RS00380 at 78.745 kb on - strand, within MMP_RS00380 at 78.746 kb on + strand, within MMP_RS00380 at 78.782 kb on - strand at 78.783 kb on + strand at 78.833 kb on - strand at 78.847 kb on - strand at 78.847 kb on - strand at 78.848 kb on + strand at 78.848 kb on + strand at 78.972 kb on - strand at 79.213 kb on + strand, within MMP_RS00385 at 79.229 kb on - strand, within MMP_RS00385 at 79.231 kb on - strand, within MMP_RS00385 at 79.281 kb on - strand, within MMP_RS00385 at 79.281 kb on - strand, within MMP_RS00385 at 79.281 kb on - strand, within MMP_RS00385 at 79.323 kb on + strand at 79.323 kb on + strand at 79.325 kb on - strand at 79.325 kb on - strand at 79.348 kb on - strand at 79.348 kb on - strand at 79.466 kb on + strand at 79.607 kb on + strand, within MMP_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 77,535 + MMP_RS00375 0.34 -0.4 77,565 + MMP_RS00375 0.37 -2.4 77,695 + MMP_RS00375 0.47 -2.2 77,829 - MMP_RS00375 0.58 +1.7 77,830 + MMP_RS00375 0.58 -0.1 77,830 + MMP_RS00375 0.58 +2.1 77,841 + MMP_RS00375 0.59 +1.9 77,844 + MMP_RS00375 0.59 -3.0 77,912 - MMP_RS00375 0.65 -2.2 77,913 + MMP_RS00375 0.65 +1.3 77,945 - MMP_RS00375 0.68 +0.6 77,975 - MMP_RS00375 0.70 +1.8 77,984 - MMP_RS00375 0.71 +0.4 78,068 - MMP_RS00375 0.78 -0.2 78,165 + MMP_RS00375 0.85 +0.1 78,174 + MMP_RS00375 0.86 -2.2 78,273 - -2.6 78,372 + +0.3 78,375 - -2.6 78,376 + -0.5 78,378 - +1.1 78,378 - -0.1 78,378 - -1.4 78,379 + -1.8 78,381 - -0.6 78,381 - -0.7 78,381 - +1.7 78,382 + +0.1 78,382 + -0.4 78,382 + +1.0 78,382 + -3.0 78,384 + +1.6 78,617 + MMP_RS00380 0.50 -1.6 78,641 + MMP_RS00380 0.58 +0.8 78,663 - MMP_RS00380 0.64 +1.7 78,723 - MMP_RS00380 0.82 +1.0 78,745 - MMP_RS00380 0.88 +0.9 78,746 + MMP_RS00380 0.88 +1.7 78,782 - -3.9 78,783 + -1.2 78,833 - -1.2 78,847 - +0.6 78,847 - -0.3 78,848 + +0.3 78,848 + -0.6 78,972 - -1.3 79,213 + MMP_RS00385 0.67 +0.4 79,229 - MMP_RS00385 0.72 +0.1 79,231 - MMP_RS00385 0.72 -0.2 79,281 - MMP_RS00385 0.87 +1.1 79,281 - MMP_RS00385 0.87 +1.9 79,281 - MMP_RS00385 0.87 -1.0 79,323 + -3.9 79,323 + -2.5 79,325 - -1.3 79,325 - +0.4 79,348 - +0.2 79,348 - +0.5 79,466 + -0.2 79,607 + MMP_RS00390 0.21 +0.3
Or see this region's nucleotide sequence