Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00305

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00290 and MMP_RS00295 are separated by 38 nucleotidesMMP_RS00295 and MMP_RS00300 are separated by 48 nucleotidesMMP_RS00300 and MMP_RS00305 are separated by 37 nucleotidesMMP_RS00305 and MMP_RS00310 are separated by 1 nucleotides MMP_RS00290: MMP_RS00290 - hypothetical protein, at 65,556 to 65,828 _RS00290 MMP_RS00295: MMP_RS00295 - gamma carbonic anhydrase family protein, at 65,867 to 66,322 _RS00295 MMP_RS00300: MMP_RS00300 - 6 7-dimethyl-8-ribityllumazine synthase, at 66,371 to 66,784 _RS00300 MMP_RS00305: MMP_RS00305 - phosphoribosyl-ATP diphosphatase, at 66,822 to 67,112 _RS00305 MMP_RS00310: MMP_RS00310 - CBS domain-containing protein, at 67,114 to 68,025 _RS00310 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.854 kb on - strandat 65.855 kb on + strandat 65.864 kb on + strandat 65.865 kb on - strandat 65.866 kb on + strandat 65.946 kb on - strand, within MMP_RS00295at 66.252 kb on - strand, within MMP_RS00295at 66.320 kb on - strandat 66.320 kb on - strandat 66.713 kb on + strand, within MMP_RS00300at 66.841 kb on - strandat 66.841 kb on - strandat 66.843 kb on - strandat 66.888 kb on - strand, within MMP_RS00305at 66.889 kb on + strand, within MMP_RS00305at 66.897 kb on + strand, within MMP_RS00305at 66.972 kb on + strand, within MMP_RS00305at 66.975 kb on + strand, within MMP_RS00305at 67.115 kb on - strandat 67.115 kb on - strandat 67.152 kb on - strandat 67.162 kb on - strandat 67.163 kb on + strandat 67.174 kb on + strandat 67.269 kb on + strand, within MMP_RS00310at 67.295 kb on - strand, within MMP_RS00310at 67.297 kb on - strand, within MMP_RS00310at 67.369 kb on - strand, within MMP_RS00310at 67.370 kb on + strand, within MMP_RS00310at 67.439 kb on + strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.477 kb on + strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.496 kb on + strand, within MMP_RS00310at 67.544 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.569 kb on - strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310at 67.815 kb on + strand, within MMP_RS00310at 67.834 kb on + strand, within MMP_RS00310at 67.883 kb on + strand, within MMP_RS00310at 67.996 kb on - strandat 68.011 kb on - strandat 68.011 kb on - strandat 68.017 kb on + strandat 68.017 kb on + strandat 68.026 kb on + strandat 68.049 kb on - strandat 68.060 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.074 kb on - strandat 68.075 kb on + strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.076 kb on - strandat 68.077 kb on + strandat 68.079 kb on + strandat 68.099 kb on - strandat 68.103 kb on + strandat 68.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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65,854 - -0.0
65,855 + -0.8
65,864 + -1.0
65,865 - -0.4
65,866 + -0.5
65,946 - MMP_RS00295 0.17 -0.6
66,252 - MMP_RS00295 0.84 +0.6
66,320 - -3.5
66,320 - -1.3
66,713 + MMP_RS00300 0.83 -2.4
66,841 - -1.2
66,841 - -0.3
66,843 - -0.1
66,888 - MMP_RS00305 0.23 -0.5
66,889 + MMP_RS00305 0.23 +0.5
66,897 + MMP_RS00305 0.26 -0.6
66,972 + MMP_RS00305 0.52 -0.9
66,975 + MMP_RS00305 0.53 +0.8
67,115 - +1.7
67,115 - -1.3
67,152 - -0.8
67,162 - +0.6
67,163 + +1.6
67,174 + -2.0
67,269 + MMP_RS00310 0.17 +0.5
67,295 - MMP_RS00310 0.20 +0.3
67,297 - MMP_RS00310 0.20 -1.1
67,369 - MMP_RS00310 0.28 +0.1
67,370 + MMP_RS00310 0.28 -1.0
67,439 + MMP_RS00310 0.36 -1.5
67,476 - MMP_RS00310 0.40 -0.2
67,476 - MMP_RS00310 0.40 -1.6
67,476 - MMP_RS00310 0.40 -1.2
67,476 - MMP_RS00310 0.40 -1.4
67,476 - MMP_RS00310 0.40 -2.5
67,477 + MMP_RS00310 0.40 -2.4
67,478 - MMP_RS00310 0.40 +1.1
67,478 - MMP_RS00310 0.40 +0.4
67,478 - MMP_RS00310 0.40 -1.1
67,479 + MMP_RS00310 0.40 -1.0
67,479 + MMP_RS00310 0.40 +0.2
67,479 + MMP_RS00310 0.40 +2.2
67,496 + MMP_RS00310 0.42 +0.8
67,544 + MMP_RS00310 0.47 +1.5
67,568 + MMP_RS00310 0.50 -3.2
67,568 + MMP_RS00310 0.50 -1.2
67,569 - MMP_RS00310 0.50 -1.0
67,570 + MMP_RS00310 0.50 +0.3
67,570 + MMP_RS00310 0.50 -1.4
67,815 + MMP_RS00310 0.77 -2.1
67,834 + MMP_RS00310 0.79 +0.6
67,883 + MMP_RS00310 0.84 -1.1
67,996 - -0.8
68,011 - -1.1
68,011 - -1.1
68,017 + +1.2
68,017 + -1.3
68,026 + -0.5
68,049 - +2.3
68,060 - -3.0
68,074 - -1.0
68,074 - -0.4
68,074 - -1.0
68,074 - +1.7
68,075 + -0.1
68,076 - -2.1
68,076 - -0.3
68,076 - -1.9
68,076 - +0.9
68,077 + -1.1
68,079 + -1.1
68,099 - +0.1
68,103 + +1.1
68,109 + +1.4

Or see this region's nucleotide sequence