Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00300

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00285 and MMP_RS00290 are separated by 57 nucleotidesMMP_RS00290 and MMP_RS00295 are separated by 38 nucleotidesMMP_RS00295 and MMP_RS00300 are separated by 48 nucleotidesMMP_RS00300 and MMP_RS00305 are separated by 37 nucleotidesMMP_RS00305 and MMP_RS00310 are separated by 1 nucleotides MMP_RS00285: MMP_RS00285 - TIGR04013 family B12-binding domain/radical SAM domain-containing protein, at 64,389 to 65,498 _RS00285 MMP_RS00290: MMP_RS00290 - hypothetical protein, at 65,556 to 65,828 _RS00290 MMP_RS00295: MMP_RS00295 - gamma carbonic anhydrase family protein, at 65,867 to 66,322 _RS00295 MMP_RS00300: MMP_RS00300 - 6 7-dimethyl-8-ribityllumazine synthase, at 66,371 to 66,784 _RS00300 MMP_RS00305: MMP_RS00305 - phosphoribosyl-ATP diphosphatase, at 66,822 to 67,112 _RS00305 MMP_RS00310: MMP_RS00310 - CBS domain-containing protein, at 67,114 to 68,025 _RS00310 Position (kb) 66 67Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 65.371 kb on + strand, within MMP_RS00285at 65.373 kb on - strand, within MMP_RS00285at 65.437 kb on + strandat 65.464 kb on - strandat 65.464 kb on - strandat 65.465 kb on + strandat 65.498 kb on - strandat 65.499 kb on + strandat 65.508 kb on - strandat 65.521 kb on - strandat 65.522 kb on + strandat 65.522 kb on + strandat 65.522 kb on + strandat 65.523 kb on - strandat 65.575 kb on - strandat 65.575 kb on - strandat 65.575 kb on - strandat 65.575 kb on - strandat 65.575 kb on - strandat 65.577 kb on - strandat 65.577 kb on - strandat 65.578 kb on + strandat 65.578 kb on + strandat 65.578 kb on + strandat 65.587 kb on - strand, within MMP_RS00290at 65.587 kb on - strand, within MMP_RS00290at 65.619 kb on - strand, within MMP_RS00290at 65.625 kb on - strand, within MMP_RS00290at 65.664 kb on - strand, within MMP_RS00290at 65.755 kb on - strand, within MMP_RS00290at 65.773 kb on - strand, within MMP_RS00290at 65.854 kb on - strandat 65.855 kb on + strandat 65.864 kb on + strandat 65.865 kb on - strandat 65.866 kb on + strandat 65.946 kb on - strand, within MMP_RS00295at 66.252 kb on - strand, within MMP_RS00295at 66.320 kb on - strandat 66.320 kb on - strandat 66.713 kb on + strand, within MMP_RS00300at 66.841 kb on - strandat 66.841 kb on - strandat 66.843 kb on - strandat 66.888 kb on - strand, within MMP_RS00305at 66.889 kb on + strand, within MMP_RS00305at 66.897 kb on + strand, within MMP_RS00305at 66.972 kb on + strand, within MMP_RS00305at 66.975 kb on + strand, within MMP_RS00305at 67.115 kb on - strandat 67.115 kb on - strandat 67.152 kb on - strandat 67.162 kb on - strandat 67.163 kb on + strandat 67.174 kb on + strandat 67.269 kb on + strand, within MMP_RS00310at 67.295 kb on - strand, within MMP_RS00310at 67.297 kb on - strand, within MMP_RS00310at 67.369 kb on - strand, within MMP_RS00310at 67.370 kb on + strand, within MMP_RS00310at 67.439 kb on + strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.476 kb on - strand, within MMP_RS00310at 67.477 kb on + strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.478 kb on - strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.479 kb on + strand, within MMP_RS00310at 67.496 kb on + strand, within MMP_RS00310at 67.544 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.568 kb on + strand, within MMP_RS00310at 67.569 kb on - strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310at 67.570 kb on + strand, within MMP_RS00310

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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65,371 + MMP_RS00285 0.88 +1.1
65,373 - MMP_RS00285 0.89 +0.7
65,437 + -1.3
65,464 - +2.0
65,464 - +0.6
65,465 + -1.0
65,498 - +1.3
65,499 + -0.1
65,508 - -0.7
65,521 - -0.1
65,522 + -0.7
65,522 + -3.2
65,522 + -1.9
65,523 - -0.9
65,575 - -0.5
65,575 - -1.6
65,575 - -3.0
65,575 - -2.3
65,575 - +1.0
65,577 - -1.1
65,577 - -1.4
65,578 + -0.3
65,578 + +0.1
65,578 + -2.2
65,587 - MMP_RS00290 0.11 +0.7
65,587 - MMP_RS00290 0.11 -1.3
65,619 - MMP_RS00290 0.23 +0.9
65,625 - MMP_RS00290 0.25 -4.5
65,664 - MMP_RS00290 0.40 -1.2
65,755 - MMP_RS00290 0.73 -0.4
65,773 - MMP_RS00290 0.79 -2.2
65,854 - -0.0
65,855 + -0.8
65,864 + -1.0
65,865 - -0.4
65,866 + -0.5
65,946 - MMP_RS00295 0.17 -0.6
66,252 - MMP_RS00295 0.84 +0.6
66,320 - -3.5
66,320 - -1.3
66,713 + MMP_RS00300 0.83 -2.4
66,841 - -1.2
66,841 - -0.3
66,843 - -0.1
66,888 - MMP_RS00305 0.23 -0.5
66,889 + MMP_RS00305 0.23 +0.5
66,897 + MMP_RS00305 0.26 -0.6
66,972 + MMP_RS00305 0.52 -0.9
66,975 + MMP_RS00305 0.53 +0.8
67,115 - +1.7
67,115 - -1.3
67,152 - -0.8
67,162 - +0.6
67,163 + +1.6
67,174 + -2.0
67,269 + MMP_RS00310 0.17 +0.5
67,295 - MMP_RS00310 0.20 +0.3
67,297 - MMP_RS00310 0.20 -1.1
67,369 - MMP_RS00310 0.28 +0.1
67,370 + MMP_RS00310 0.28 -1.0
67,439 + MMP_RS00310 0.36 -1.5
67,476 - MMP_RS00310 0.40 -0.2
67,476 - MMP_RS00310 0.40 -1.6
67,476 - MMP_RS00310 0.40 -1.2
67,476 - MMP_RS00310 0.40 -1.4
67,476 - MMP_RS00310 0.40 -2.5
67,477 + MMP_RS00310 0.40 -2.4
67,478 - MMP_RS00310 0.40 +1.1
67,478 - MMP_RS00310 0.40 +0.4
67,478 - MMP_RS00310 0.40 -1.1
67,479 + MMP_RS00310 0.40 -1.0
67,479 + MMP_RS00310 0.40 +0.2
67,479 + MMP_RS00310 0.40 +2.2
67,496 + MMP_RS00310 0.42 +0.8
67,544 + MMP_RS00310 0.47 +1.5
67,568 + MMP_RS00310 0.50 -3.2
67,568 + MMP_RS00310 0.50 -1.2
67,569 - MMP_RS00310 0.50 -1.0
67,570 + MMP_RS00310 0.50 +0.3
67,570 + MMP_RS00310 0.50 -1.4

Or see this region's nucleotide sequence