Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00120 and MMP_RS00125 are separated by 29 nucleotides MMP_RS00125 and MMP_RS00130 are separated by 91 nucleotides MMP_RS00130 and MMP_RS00135 are separated by 116 nucleotides MMP_RS00135 and MMP_RS00140 are separated by 4 nucleotides
MMP_RS00120: MMP_RS00120 - LysR family transcriptional regulator, at 27,798 to 28,640
_RS00120
MMP_RS00125: MMP_RS00125 - DUF2798 domain-containing protein, at 28,670 to 28,897
_RS00125
MMP_RS00130: MMP_RS00130 - nickel-responsive transcriptional regulator NikR, at 28,989 to 29,414
_RS00130
MMP_RS00135: MMP_RS00135 - DUF2121 domain-containing protein, at 29,531 to 30,406
_RS00135
MMP_RS00140: MMP_RS00140 - DUF192 domain-containing protein, at 30,411 to 30,746
_RS00140
Position (kb) 28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 28.059 kb on - strand, within MMP_RS00120 at 28.060 kb on + strand, within MMP_RS00120 at 28.071 kb on - strand, within MMP_RS00120 at 28.115 kb on - strand, within MMP_RS00120 at 28.118 kb on + strand, within MMP_RS00120 at 28.332 kb on - strand, within MMP_RS00120 at 28.609 kb on - strand at 28.657 kb on + strand at 28.659 kb on - strand at 28.660 kb on + strand at 28.683 kb on + strand at 28.829 kb on - strand, within MMP_RS00125 at 28.900 kb on + strand at 28.900 kb on + strand at 28.924 kb on - strand at 29.300 kb on - strand, within MMP_RS00130 at 29.390 kb on - strand at 29.390 kb on - strand at 29.390 kb on - strand at 29.417 kb on - strand at 29.417 kb on - strand at 29.418 kb on + strand at 29.453 kb on + strand at 29.459 kb on - strand at 29.516 kb on + strand at 29.746 kb on + strand, within MMP_RS00135 at 29.770 kb on + strand, within MMP_RS00135 at 29.770 kb on + strand, within MMP_RS00135 at 29.807 kb on - strand, within MMP_RS00135 at 29.807 kb on - strand, within MMP_RS00135 at 30.051 kb on + strand, within MMP_RS00135 at 30.051 kb on + strand, within MMP_RS00135 at 30.231 kb on - strand, within MMP_RS00135 at 30.253 kb on - strand, within MMP_RS00135 at 30.262 kb on + strand, within MMP_RS00135 at 30.262 kb on + strand, within MMP_RS00135
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 28,059 - MMP_RS00120 0.31 +0.9 28,060 + MMP_RS00120 0.31 -3.7 28,071 - MMP_RS00120 0.32 +1.7 28,115 - MMP_RS00120 0.38 -1.2 28,118 + MMP_RS00120 0.38 -3.6 28,332 - MMP_RS00120 0.63 -0.2 28,609 - +0.4 28,657 + -0.2 28,659 - +0.1 28,660 + -1.7 28,683 + -0.3 28,829 - MMP_RS00125 0.70 +1.7 28,900 + -0.4 28,900 + +1.0 28,924 - -0.8 29,300 - MMP_RS00130 0.73 -3.9 29,390 - -1.4 29,390 - -1.1 29,390 - -2.6 29,417 - -1.3 29,417 - +1.0 29,418 + +1.3 29,453 + +0.5 29,459 - +1.1 29,516 + -0.5 29,746 + MMP_RS00135 0.25 +0.5 29,770 + MMP_RS00135 0.27 +1.3 29,770 + MMP_RS00135 0.27 +0.8 29,807 - MMP_RS00135 0.32 -1.5 29,807 - MMP_RS00135 0.32 -1.1 30,051 + MMP_RS00135 0.59 -1.6 30,051 + MMP_RS00135 0.59 +0.6 30,231 - MMP_RS00135 0.80 -0.3 30,253 - MMP_RS00135 0.82 +1.3 30,262 + MMP_RS00135 0.83 -0.6 30,262 + MMP_RS00135 0.83 -1.1
Or see this region's nucleotide sequence