Strain Fitness in Pantoea sp. MT58 around IAI47_11345

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,395,940	+		IAI47_11340	0.38	+0.4
2,395,940	+		IAI47_11340	0.38	+0.6
2,395,948	+		IAI47_11340	0.38	-0.7
2,395,949	-		IAI47_11340	0.38	+0.6
2,395,949	-		IAI47_11340	0.38	+0.0
2,395,962	+		IAI47_11340	0.39	+1.2
2,396,016	+		IAI47_11340	0.43	-1.2
2,396,030	+		IAI47_11340	0.44	-1.2
2,396,031	-		IAI47_11340	0.44	-0.5
2,396,031	-		IAI47_11340	0.44	-0.6
2,396,031	-		IAI47_11340	0.44	-0.3
2,396,093	+		IAI47_11340	0.48	-1.0
2,396,093	+		IAI47_11340	0.48	-1.2
2,396,093	+		IAI47_11340	0.48	-0.6
2,396,093	+		IAI47_11340	0.48	-2.2
2,396,093	+		IAI47_11340	0.48	-2.6
2,396,093	+		IAI47_11340	0.48	-0.4
2,396,093	+		IAI47_11340	0.48	-1.0
2,396,093	+		IAI47_11340	0.48	+0.5
2,396,093	+		IAI47_11340	0.48	-1.6
2,396,094	-		IAI47_11340	0.48	-1.0
2,396,094	-		IAI47_11340	0.48	+0.1
2,396,094	-		IAI47_11340	0.48	+2.3
2,396,094	-		IAI47_11340	0.48	-1.2
2,396,094	-		IAI47_11340	0.48	+0.7
2,396,094	-		IAI47_11340	0.48	-2.0
2,396,094	-		IAI47_11340	0.48	-1.0
2,396,094	-		IAI47_11340	0.48	+0.3
2,396,094	-		IAI47_11340	0.48	+0.9
2,396,094	-		IAI47_11340	0.48	-0.7
2,396,096	+		IAI47_11340	0.48	-1.7
2,396,097	-		IAI47_11340	0.48	-1.6
2,396,102	+		IAI47_11340	0.48	+0.8
2,396,102	+		IAI47_11340	0.48	-1.6
2,396,102	+		IAI47_11340	0.48	+0.8
2,396,102	+		IAI47_11340	0.48	-0.2
2,396,102	+		IAI47_11340	0.48	-1.4
2,396,102	+		IAI47_11340	0.48	+1.6
2,396,102	+		IAI47_11340	0.48	-0.0
2,396,102	+		IAI47_11340	0.48	+0.0
2,396,103	-		IAI47_11340	0.48	+0.3
2,396,103	-		IAI47_11340	0.48	-0.4
2,396,103	-		IAI47_11340	0.48	+2.2
2,396,262	+		IAI47_11340	0.59	-2.0
2,396,283	-		IAI47_11340	0.60	+0.6
2,396,291	+		IAI47_11340	0.61	+0.6
2,396,291	+		IAI47_11340	0.61	-0.3
2,396,291	+		IAI47_11340	0.61	-0.6
2,396,291	+		IAI47_11340	0.61	+1.1
2,396,328	+		IAI47_11340	0.63	+0.1
2,396,328	+		IAI47_11340	0.63	-1.2
2,396,337	+		IAI47_11340	0.64	+2.2
2,396,394	+		IAI47_11340	0.67	+0.8
2,396,394	+		IAI47_11340	0.67	-1.6
2,396,445	+		IAI47_11340	0.71	-0.1
2,396,445	+		IAI47_11340	0.71	+2.4
2,396,445	+		IAI47_11340	0.71	-1.6
2,396,446	-		IAI47_11340	0.71	-0.4
2,396,497	+		IAI47_11340	0.74	+0.0
2,396,509	-		IAI47_11340	0.75	+0.0
2,396,522	+		IAI47_11340	0.76	+0.6
2,396,529	+		IAI47_11340	0.76	-1.2
2,396,529	+		IAI47_11340	0.76	-2.1
2,396,529	+		IAI47_11340	0.76	-3.0
2,396,529	+		IAI47_11340	0.76	+3.4
2,396,530	-		IAI47_11340	0.76	-2.1
2,396,532	+		IAI47_11340	0.76	-2.7
2,396,532	+		IAI47_11340	0.76	-0.2
2,396,532	+		IAI47_11340	0.76	+0.5
2,396,532	+		IAI47_11340	0.76	-2.0
2,396,533	-		IAI47_11340	0.76	-1.5
2,396,533	-		IAI47_11340	0.76	-0.6
2,396,664	+		IAI47_11340	0.85	-2.1
2,396,664	+		IAI47_11340	0.85	-3.5
2,396,670	+		IAI47_11340	0.85	+1.8
2,396,670	+		IAI47_11340	0.85	+0.4
2,396,670	+		IAI47_11340	0.85	+0.4
2,396,670	+		IAI47_11340	0.85	-0.2
2,396,670	+		IAI47_11340	0.85	-2.6
2,396,670	+		IAI47_11340	0.85	-3.1
2,396,670	+		IAI47_11340	0.85	+0.3
2,396,670	+		IAI47_11340	0.85	-0.7
2,396,670	+		IAI47_11340	0.85	+2.1
2,396,671	-		IAI47_11340	0.85	+3.4
2,396,671	-		IAI47_11340	0.85	+1.0
2,396,671	-		IAI47_11340	0.85	-1.0
2,396,671	-		IAI47_11340	0.85	+1.1
2,396,671	-		IAI47_11340	0.85	+1.0
2,396,671	-		IAI47_11340	0.85	-1.6
2,396,671	-		IAI47_11340	0.85	+0.2
2,396,672	+		IAI47_11340	0.85	-3.0
2,396,673	-		IAI47_11340	0.85	-2.0
2,396,673	-		IAI47_11340	0.85	-0.5
2,396,673	-		IAI47_11340	0.85	-0.7
2,396,753	+				-0.2
2,396,754	-				-1.0
2,396,754	-				+0.8
2,396,754	-				+1.0
2,396,754	-				+1.6
2,396,763	+				-1.8
2,396,763	+				+2.2
2,396,764	-				-1.7
2,396,764	-				+0.0
2,396,764	-				+0.8
2,396,764	-				-1.7
2,396,764	-				-0.9
2,396,764	-				+1.6
2,396,804	+				+1.0
2,396,805	-				-1.0
2,396,805	-				+0.6
2,396,896	-				+1.4
2,396,899	-				-1.7
2,396,922	-				+0.8
2,396,925	+				-0.5
2,396,925	+				+0.0
2,396,925	+				-0.1
2,396,925	+				+0.3
2,396,925	+				+0.0
2,396,925	+				-0.4
2,396,925	+				-0.6
2,396,925	+				-1.2
2,396,926	-				+0.6
2,396,926	-				+0.4
2,396,926	-				-2.5
2,396,926	-				+0.1
2,396,926	-				-2.8
2,396,983	+				+0.4
2,396,984	-				+2.2
2,396,984	-				-1.2
2,397,004	+				-1.4
2,397,097	+				+0.5
2,397,099	+				-1.1
2,397,099	+				+0.0
2,397,099	+				+0.4
2,397,099	+				+1.5
2,397,100	-				+0.3
2,397,100	-				-2.1
2,397,119	-		IAI47_11345	0.10	-1.0
2,397,119	-		IAI47_11345	0.10	+0.6
2,397,119	-		IAI47_11345	0.10	-1.5
2,397,119	-		IAI47_11345	0.10	-2.0
2,397,119	-		IAI47_11345	0.10	-1.4
2,397,162	+		IAI47_11345	0.13	+0.5
2,397,163	-		IAI47_11345	0.13	+0.9
2,397,163	-		IAI47_11345	0.13	-1.5
2,397,163	-		IAI47_11345	0.13	-2.1
2,397,163	-		IAI47_11345	0.13	-1.8
2,397,187	+		IAI47_11345	0.14	+1.6
2,397,187	+		IAI47_11345	0.14	+0.6
2,397,188	-		IAI47_11345	0.14	-0.2
2,397,188	-		IAI47_11345	0.14	-0.9
2,397,188	-		IAI47_11345	0.14	+0.4
2,397,205	+		IAI47_11345	0.15	-0.4
2,397,206	-		IAI47_11345	0.15	+0.5
2,397,320	-		IAI47_11345	0.21	-0.4
2,397,361	+		IAI47_11345	0.23	-1.1
2,397,361	+		IAI47_11345	0.23	-1.2
2,397,362	-		IAI47_11345	0.24	-1.5
2,397,488	+		IAI47_11345	0.30	-2.1
2,397,488	+		IAI47_11345	0.30	+0.1
2,397,488	+		IAI47_11345	0.30	+1.4
2,397,489	-		IAI47_11345	0.30	-0.7
2,397,489	-		IAI47_11345	0.30	+1.2
2,397,489	-		IAI47_11345	0.30	-2.8
2,397,489	-		IAI47_11345	0.30	-3.0
2,397,511	+		IAI47_11345	0.32	-2.5
2,397,511	+		IAI47_11345	0.32	-0.4
2,397,512	-		IAI47_11345	0.32	+0.4
2,397,546	+		IAI47_11345	0.33	-0.2
2,397,546	+		IAI47_11345	0.33	+1.5
2,397,546	+		IAI47_11345	0.33	-0.4
2,397,546	+		IAI47_11345	0.33	+1.0
2,397,546	+		IAI47_11345	0.33	+1.2
2,397,547	-		IAI47_11345	0.33	+1.0
2,397,778	+		IAI47_11345	0.46	+0.1
2,397,779	-		IAI47_11345	0.46	-0.5
2,397,779	-		IAI47_11345	0.46	-1.5
2,397,779	-		IAI47_11345	0.46	-1.8
2,397,779	-		IAI47_11345	0.46	-0.1
2,397,779	-		IAI47_11345	0.46	+1.2
2,397,811	-		IAI47_11345	0.48	-0.7
2,397,811	-		IAI47_11345	0.48	+0.4
2,397,813	+		IAI47_11345	0.48	+1.3
2,397,814	-		IAI47_11345	0.48	+1.4
2,397,814	-		IAI47_11345	0.48	-2.0
2,397,855	+		IAI47_11345	0.50	-1.2
2,397,965	+		IAI47_11345	0.56	-0.4
2,397,976	+		IAI47_11345	0.56	-2.1
2,397,976	+		IAI47_11345	0.56	+1.0
2,397,976	+		IAI47_11345	0.56	-0.3
2,397,976	+		IAI47_11345	0.56	-0.7
2,397,977	-		IAI47_11345	0.57	+0.3
2,397,978	+		IAI47_11345	0.57	-0.7
2,397,978	+		IAI47_11345	0.57	+2.0
2,397,978	+		IAI47_11345	0.57	-1.4
2,397,978	+		IAI47_11345	0.57	-1.5
2,397,978	+		IAI47_11345	0.57	+0.6
2,397,978	+		IAI47_11345	0.57	-1.7
2,397,978	+		IAI47_11345	0.57	-0.4
2,397,979	-		IAI47_11345	0.57	+2.2
2,397,979	-		IAI47_11345	0.57	-1.8
2,397,979	-		IAI47_11345	0.57	+0.0
2,397,979	-		IAI47_11345	0.57	+0.9
2,397,979	-		IAI47_11345	0.57	+1.2
2,397,979	-		IAI47_11345	0.57	-1.1
2,397,979	-		IAI47_11345	0.57	-2.1
2,397,979	-		IAI47_11345	0.57	+2.6
2,397,979	-		IAI47_11345	0.57	+1.1
2,397,979	-		IAI47_11345	0.57	-3.2
2,398,010	+		IAI47_11345	0.58	+0.2
2,398,010	+		IAI47_11345	0.58	+0.2
2,398,011	-		IAI47_11345	0.58	+1.6
2,398,011	-		IAI47_11345	0.58	+1.3
2,398,011	-		IAI47_11345	0.58	-1.7
2,398,085	-		IAI47_11345	0.62	+0.0
2,398,085	-		IAI47_11345	0.62	-0.8
2,398,085	-		IAI47_11345	0.62	+0.4
2,398,097	-		IAI47_11345	0.63	+0.0
2,398,097	-		IAI47_11345	0.63	-0.2
2,398,141	+		IAI47_11345	0.65	-2.8
2,398,376	+		IAI47_11345	0.78	+1.3
2,398,377	-		IAI47_11345	0.78	+1.6
2,398,388	-		IAI47_11345	0.79	-1.5
2,398,388	-		IAI47_11345	0.79	-3.7
2,398,388	-		IAI47_11345	0.79	-1.8
2,398,388	-		IAI47_11345	0.79	+0.0
2,398,388	-		IAI47_11345	0.79	+2.6
2,398,388	-		IAI47_11345	0.79	-0.7
2,398,499	+		IAI47_11345	0.85	+2.3
2,398,537	+		IAI47_11345	0.87	-1.7
2,398,538	-		IAI47_11345	0.87	+1.1
2,398,538	-		IAI47_11345	0.87	+0.3
2,398,561	+		IAI47_11345	0.88	-3.0
2,398,561	+		IAI47_11345	0.88	-0.5
2,398,562	-		IAI47_11345	0.88	+0.2
2,398,768	+				+2.8
2,398,768	+				-2.4
2,398,769	-				-1.4
2,398,769	-				-2.5
2,398,769	-				-1.2
2,398,769	-				-3.3
2,398,769	-				+0.3
2,398,769	-				-2.0
2,398,769	-				+0.4
2,398,769	-				+1.1
2,398,803	+				+1.6
2,398,803	+				+0.0
2,398,804	-				+0.0
2,398,804	-				+2.3
2,398,804	-				-1.4
2,398,805	+				-0.6
2,399,020	+		IAI47_11350	0.23	+0.8
2,399,020	+		IAI47_11350	0.23	+0.8
2,399,020	+		IAI47_11350	0.23	-2.9
2,399,020	+		IAI47_11350	0.23	+0.0
2,399,021	-		IAI47_11350	0.23	-0.2
2,399,021	-		IAI47_11350	0.23	+0.1
2,399,046	+		IAI47_11350	0.25	+1.4
2,399,047	-		IAI47_11350	0.25	+0.4
2,399,058	-		IAI47_11350	0.27	+0.1
2,399,080	+		IAI47_11350	0.29	-0.6
2,399,081	-		IAI47_11350	0.29	-0.1
2,399,119	+		IAI47_11350	0.33	-1.0
2,399,119	+		IAI47_11350	0.33	+0.5
2,399,119	+		IAI47_11350	0.33	+0.1
2,399,119	+		IAI47_11350	0.33	-1.4
2,399,120	-		IAI47_11350	0.33	-0.1
2,399,120	-		IAI47_11350	0.33	-1.7
2,399,176	+		IAI47_11350	0.39	-2.0
2,399,176	+		IAI47_11350	0.39	+0.5
2,399,318	-		IAI47_11350	0.53	-1.8
2,399,342	+		IAI47_11350	0.56	-0.2
2,399,342	+		IAI47_11350	0.56	-0.4
2,399,342	+		IAI47_11350	0.56	+0.8
2,399,342	+		IAI47_11350	0.56	+1.1
2,399,342	+		IAI47_11350	0.56	+2.4
2,399,343	-		IAI47_11350	0.56	+1.6
2,399,343	-		IAI47_11350	0.56	+1.4
2,399,343	-		IAI47_11350	0.56	+0.0
2,399,407	+		IAI47_11350	0.63	+1.0
2,399,408	-		IAI47_11350	0.63	-2.1
2,399,408	-		IAI47_11350	0.63	-0.9
2,399,562	-		IAI47_11350	0.79	-0.4
2,399,562	-		IAI47_11350	0.79	+0.4
2,399,569	+		IAI47_11350	0.79	-3.4
2,399,569	+		IAI47_11350	0.79	+0.9
2,399,570	-		IAI47_11350	0.80	-0.4
2,399,570	-		IAI47_11350	0.80	-0.8
2,399,570	-		IAI47_11350	0.80	+1.9
2,399,570	-		IAI47_11350	0.80	+0.4
2,399,632	+		IAI47_11350	0.86	+0.4
2,399,633	-		IAI47_11350	0.86	+4.0