Strain Fitness in Pantoea sp. MT58 around IAI47_07125

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,501,677	+				+0.6
1,501,678	-				+1.0
1,501,742	-		IAI47_07120	0.14	+0.6
1,501,837	+		IAI47_07120	0.27	-0.3
1,501,876	-		IAI47_07120	0.32	-0.1
1,501,876	-		IAI47_07120	0.32	-1.6
1,501,876	-		IAI47_07120	0.32	+1.1
1,501,888	+		IAI47_07120	0.33	-0.6
1,501,888	+		IAI47_07120	0.33	+1.5
1,501,940	+		IAI47_07120	0.40	+0.7
1,501,940	+		IAI47_07120	0.40	-1.6
1,501,940	+		IAI47_07120	0.40	-2.1
1,501,940	+		IAI47_07120	0.40	-3.2
1,501,940	+		IAI47_07120	0.40	-1.3
1,501,940	+		IAI47_07120	0.40	+0.4
1,501,940	+		IAI47_07120	0.40	+0.5
1,501,941	-		IAI47_07120	0.40	+0.1
1,501,941	-		IAI47_07120	0.40	-0.2
1,502,079	+		IAI47_07120	0.58	+0.3
1,502,080	-		IAI47_07120	0.58	-1.5
1,502,101	+		IAI47_07120	0.61	-0.0
1,502,101	+		IAI47_07120	0.61	-0.4
1,502,101	+		IAI47_07120	0.61	+1.8
1,502,102	-		IAI47_07120	0.61	+1.1
1,502,163	-		IAI47_07120	0.69	-1.1
1,502,178	+		IAI47_07120	0.71	-1.9
1,502,178	+		IAI47_07120	0.71	+3.6
1,502,178	+		IAI47_07120	0.71	-2.5
1,502,181	+		IAI47_07120	0.71	-0.4
1,502,181	+		IAI47_07120	0.71	-0.6
1,502,182	-		IAI47_07120	0.71	-1.0
1,502,182	-		IAI47_07120	0.71	-2.5
1,502,182	-		IAI47_07120	0.71	+0.7
1,502,223	+		IAI47_07120	0.77	-0.3
1,502,224	-		IAI47_07120	0.77	+1.6
1,502,233	+		IAI47_07120	0.78	+1.3
1,502,233	+		IAI47_07120	0.78	+0.1
1,502,234	-		IAI47_07120	0.78	+0.9
1,502,236	+		IAI47_07120	0.79	-1.1
1,502,236	+		IAI47_07120	0.79	+0.6
1,502,236	+		IAI47_07120	0.79	+3.0
1,502,237	-		IAI47_07120	0.79	-0.3
1,502,237	-		IAI47_07120	0.79	+1.6
1,502,237	-		IAI47_07120	0.79	+1.6
1,502,237	-		IAI47_07120	0.79	+0.9
1,502,237	-		IAI47_07120	0.79	+0.6
1,502,307	+		IAI47_07120	0.88	+1.3
1,502,307	+		IAI47_07120	0.88	-2.4
1,502,308	-		IAI47_07120	0.88	+0.9
1,502,308	-		IAI47_07120	0.88	+2.2
1,502,308	-		IAI47_07120	0.88	+1.1
1,502,309	+		IAI47_07120	0.88	+1.7
1,502,309	+		IAI47_07120	0.88	+1.1
1,502,309	+		IAI47_07120	0.88	-1.1
1,502,310	-		IAI47_07120	0.88	-0.9
1,502,310	-		IAI47_07120	0.88	+0.7
1,502,310	-		IAI47_07120	0.88	-2.3
1,502,365	+				+0.7
1,502,366	-				-0.6
1,502,392	-				+1.1
1,502,392	-				+2.2
1,502,428	+				+0.5
1,502,429	-				+2.5
1,502,456	+				+2.7
1,502,456	+				-2.0
1,502,456	+				-1.8
1,502,456	+				-1.4
1,502,456	+				-0.1
1,502,457	-				+0.3
1,502,457	-				-0.9
1,502,457	-				+2.6
1,502,457	-				-1.1
1,502,457	-				-1.2
1,502,457	-				-0.6
1,502,480	+				+2.9
1,502,481	-				-0.9
1,502,481	-				-2.0
1,502,481	-				-0.3
1,502,533	-				-1.3
1,502,543	+				+1.6
1,502,543	+				-1.7
1,502,543	+				-0.3
1,502,548	+				+2.6
1,502,549	-				+0.7
1,502,549	-				+2.1
1,502,575	+				-0.9
1,502,576	-				+0.1
1,502,585	+				-1.8
1,502,585	+				-1.1
1,502,585	+				+1.1
1,502,586	-				-2.0
1,502,586	-				+1.9
1,502,588	+				+1.7
1,502,588	+				+2.3
1,502,589	-				-0.7
1,502,610	+				-0.9
1,502,610	+				+0.9
1,502,611	-				-0.1
1,502,611	-				+1.2
1,502,611	-				-0.9
1,502,619	-				+0.1
1,502,716	+				+1.6
1,502,716	+				-0.5
1,502,716	+				-1.0
1,502,716	+				+1.7
1,502,717	-				+0.5
1,502,717	-				-1.0
1,502,717	-				+0.2
1,502,732	+				-0.4
1,502,741	+				+0.6
1,502,741	+				-1.4
1,502,741	+				-0.7
1,502,741	+				-1.8
1,502,741	+				-2.5
1,502,741	+				-1.6
1,502,742	-				+0.4
1,502,787	+		IAI47_07125	0.13	-0.6
1,502,787	+		IAI47_07125	0.13	-0.5
1,502,788	-		IAI47_07125	0.13	-0.6
1,502,788	-		IAI47_07125	0.13	-0.6
1,502,788	-		IAI47_07125	0.13	-1.1
1,502,806	+		IAI47_07125	0.14	-0.6
1,502,806	+		IAI47_07125	0.14	+0.4
1,502,807	-		IAI47_07125	0.14	+2.2
1,502,807	-		IAI47_07125	0.14	+0.1
1,502,807	-		IAI47_07125	0.14	+0.9
1,502,807	-		IAI47_07125	0.14	+1.8
1,502,807	-		IAI47_07125	0.14	+1.8
1,502,893	-		IAI47_07125	0.21	-0.6
1,502,916	+		IAI47_07125	0.22	+1.7
1,502,917	-		IAI47_07125	0.22	-1.3
1,502,921	+		IAI47_07125	0.22	-2.5
1,502,921	+		IAI47_07125	0.22	-1.0
1,502,921	+		IAI47_07125	0.22	-1.1
1,502,921	+		IAI47_07125	0.22	-0.7
1,502,921	+		IAI47_07125	0.22	+0.7
1,502,922	-		IAI47_07125	0.23	-1.6
1,502,922	-		IAI47_07125	0.23	-1.0
1,502,922	-		IAI47_07125	0.23	-2.4
1,502,922	-		IAI47_07125	0.23	-1.4
1,502,922	-		IAI47_07125	0.23	-0.9
1,503,022	-		IAI47_07125	0.30	+1.3
1,503,022	-		IAI47_07125	0.30	-1.1
1,503,068	+		IAI47_07125	0.33	-0.1
1,503,075	-		IAI47_07125	0.33	-0.9
1,503,088	+		IAI47_07125	0.34	-1.6
1,503,088	+		IAI47_07125	0.34	+1.4
1,503,089	-		IAI47_07125	0.34	-1.6
1,503,089	-		IAI47_07125	0.34	+2.6
1,503,123	+		IAI47_07125	0.37	+0.7
1,503,162	+		IAI47_07125	0.39	-0.2
1,503,163	-		IAI47_07125	0.40	+0.1
1,503,179	-		IAI47_07125	0.41	-0.0
1,503,179	-		IAI47_07125	0.41	-2.9
1,503,186	-		IAI47_07125	0.41	+1.8
1,503,186	-		IAI47_07125	0.41	-2.4
1,503,186	-		IAI47_07125	0.41	-0.3
1,503,189	+		IAI47_07125	0.41	-2.9
1,503,189	+		IAI47_07125	0.41	+1.1
1,503,189	+		IAI47_07125	0.41	+0.6
1,503,189	+		IAI47_07125	0.41	+0.7
1,503,190	-		IAI47_07125	0.41	+0.7
1,503,252	-		IAI47_07125	0.46	-0.3
1,503,301	-		IAI47_07125	0.49	-0.3
1,503,390	+		IAI47_07125	0.56	+0.4
1,503,391	-		IAI47_07125	0.56	+2.2
1,503,405	+		IAI47_07125	0.57	+0.7
1,503,406	-		IAI47_07125	0.57	-1.0
1,503,427	+		IAI47_07125	0.58	-2.9
1,503,428	-		IAI47_07125	0.58	+1.4
1,503,428	-		IAI47_07125	0.58	-1.6
1,503,453	+		IAI47_07125	0.60	+1.3
1,503,453	+		IAI47_07125	0.60	+0.1
1,503,453	+		IAI47_07125	0.60	-0.9
1,503,453	+		IAI47_07125	0.60	-1.3
1,503,454	-		IAI47_07125	0.60	-0.8
1,503,454	-		IAI47_07125	0.60	+0.9
1,503,454	-		IAI47_07125	0.60	+0.4
1,503,454	-		IAI47_07125	0.60	+0.8
1,503,582	+		IAI47_07125	0.69	-1.3
1,503,582	+		IAI47_07125	0.69	+1.7
1,503,583	-		IAI47_07125	0.69	-0.5
1,503,583	-		IAI47_07125	0.69	+0.3
1,503,583	-		IAI47_07125	0.69	-0.7
1,503,619	+		IAI47_07125	0.72	-1.6
1,503,619	+		IAI47_07125	0.72	+4.0
1,503,619	+		IAI47_07125	0.72	-1.9
1,503,619	+		IAI47_07125	0.72	-3.3
1,503,619	+		IAI47_07125	0.72	+0.7
1,503,619	+		IAI47_07125	0.72	+1.3
1,503,620	-		IAI47_07125	0.72	+0.6
1,503,620	-		IAI47_07125	0.72	+1.7
1,503,620	-		IAI47_07125	0.72	+0.6
1,503,620	-		IAI47_07125	0.72	-1.7
1,503,620	-		IAI47_07125	0.72	-1.9
1,503,620	-		IAI47_07125	0.72	-1.3
1,503,620	-		IAI47_07125	0.72	+0.4
1,503,620	-		IAI47_07125	0.72	-2.4
1,503,620	-		IAI47_07125	0.72	-0.9
1,503,620	-		IAI47_07125	0.72	+0.4
1,503,620	-		IAI47_07125	0.72	-2.5
1,503,620	-		IAI47_07125	0.72	+0.7
1,503,687	+		IAI47_07125	0.76	-1.3
1,503,694	-		IAI47_07125	0.77	-2.0
1,503,694	-		IAI47_07125	0.77	+2.5
1,503,694	-		IAI47_07125	0.77	+0.2
1,503,694	-		IAI47_07125	0.77	+1.4
1,503,732	+		IAI47_07125	0.80	-2.5
1,503,739	+		IAI47_07125	0.80	-1.1
1,503,739	+		IAI47_07125	0.80	-0.3
1,503,739	+		IAI47_07125	0.80	+0.6
1,503,739	+		IAI47_07125	0.80	+0.7
1,503,740	-		IAI47_07125	0.80	+0.3
1,503,740	-		IAI47_07125	0.80	-1.9
1,503,786	+		IAI47_07125	0.83	+1.4
1,503,787	-		IAI47_07125	0.84	+2.9
1,503,875	-		IAI47_07125	0.90	-0.3
1,503,875	-		IAI47_07125	0.90	-1.7
1,503,892	+				+0.1
1,503,892	+				+1.5
1,503,892	+				+1.1
1,503,892	+				+1.0
1,503,893	-				+1.6
1,503,893	-				+0.7
1,503,909	-				+0.9
1,503,981	+				-2.4
1,503,981	+				-0.5
1,503,981	+				+1.1
1,503,982	-				-2.3
1,503,982	-				-1.4
1,503,982	-				-0.7
1,503,982	-				+0.7
1,503,982	-				-0.0
1,503,982	-				-2.1
1,503,988	-				-1.9
1,504,060	+				+1.1
1,504,060	+				-2.3
1,504,060	+				-2.9
1,504,060	+				+1.0
1,504,061	-				+1.1
1,504,061	-				+0.4
1,504,061	-				-0.8
1,504,080	+				+0.6
1,504,081	-				-0.3
1,504,081	-				-0.3
1,504,106	+				+1.7
1,504,106	+				-0.6
1,504,106	+				+1.3
1,504,107	-				-1.4
1,504,174	+				-0.4
1,504,177	+				+1.2
1,504,177	+				+0.5
1,504,178	-				-1.2
1,504,196	+				-0.3
1,504,197	-				-0.0
1,504,197	-				-1.0
1,504,226	+				-0.4
1,504,226	+				-2.1
1,504,226	+				-0.9
1,504,226	+				-1.3
1,504,226	+				+3.4
1,504,226	+				-1.4
1,504,226	+				-0.5
1,504,226	+				+0.4
1,504,227	-				+0.1
1,504,227	-				-0.9
1,504,227	-				+0.9
1,504,227	-				-1.7
1,504,227	-				-0.1
1,504,227	-				-0.4
1,504,227	-				-0.1
1,504,227	-				+0.8
1,504,227	-				-2.2
1,504,245	+				-2.8
1,504,246	-				-0.4
1,504,246	-				-0.2
1,504,264	+				-1.3
1,504,265	-				+1.0
1,504,265	-				+2.1
1,504,268	+				+1.8
1,504,283	+				+1.1
1,504,283	+				+1.6
1,504,283	+				-0.3
1,504,307	-				-2.1
1,504,325	+				+1.4
1,504,325	+				-2.3
1,504,326	-				+0.3
1,504,365	+				+1.3
1,504,433	+				+1.3
1,504,433	+				-0.3
1,504,434	-				-0.7
1,504,434	-				-1.4
1,504,436	+				-2.0
1,504,436	+				+1.2
1,504,437	-				-2.8
1,504,484	-				-0.6
1,504,507	+				-2.3
1,504,507	+				-0.3
1,504,512	+				-1.5
1,504,512	+				+0.4
1,504,512	+				+0.1
1,504,512	+				+1.0
1,504,512	+				-2.7
1,504,512	+				-0.5
1,504,512	+				+0.6
1,504,512	+				+0.1
1,504,513	-				+0.4
1,504,513	-				+0.8
1,504,513	-				+1.7
1,504,513	-				-2.9
1,504,513	-				+1.6
1,504,523	+				-1.6
1,504,523	+				+0.0
1,504,524	-				+2.8
1,504,524	-				+1.2
1,504,524	-				+0.9
1,504,524	-				+0.7
1,504,524	-				-0.9
1,504,524	-				+1.7
1,504,538	+				+1.0
1,504,538	+				+0.1
1,504,538	+				+1.1
1,504,587	+		IAI47_07130	0.12	-3.0
1,504,588	-		IAI47_07130	0.12	-1.3
1,504,588	-		IAI47_07130	0.12	-0.3
1,504,588	-		IAI47_07130	0.12	+0.6
1,504,629	+		IAI47_07130	0.15	-0.1
1,504,629	+		IAI47_07130	0.15	+0.1
1,504,634	+		IAI47_07130	0.15	+0.7
1,504,635	-		IAI47_07130	0.15	-1.6
1,504,671	+		IAI47_07130	0.18	+1.1
1,504,671	+		IAI47_07130	0.18	-0.6
1,504,671	+		IAI47_07130	0.18	+0.1
1,504,671	+		IAI47_07130	0.18	+0.1
1,504,672	-		IAI47_07130	0.18	+0.4
1,504,673	+		IAI47_07130	0.18	+0.0
1,504,673	+		IAI47_07130	0.18	+0.3
1,504,673	+		IAI47_07130	0.18	+0.5
1,504,673	+		IAI47_07130	0.18	+1.5
1,504,673	+		IAI47_07130	0.18	-0.1
1,504,673	+		IAI47_07130	0.18	+1.6
1,504,673	+		IAI47_07130	0.18	-0.7
1,504,673	+		IAI47_07130	0.18	-0.7
1,504,673	+		IAI47_07130	0.18	-1.9
1,504,673	+		IAI47_07130	0.18	+0.1
1,504,674	-		IAI47_07130	0.18	+0.1
1,504,674	-		IAI47_07130	0.18	-0.6
1,504,674	-		IAI47_07130	0.18	-2.3
1,504,674	-		IAI47_07130	0.18	-0.3
1,504,674	-		IAI47_07130	0.18	-2.2
1,504,674	-		IAI47_07130	0.18	+1.0
1,504,674	-		IAI47_07130	0.18	+1.9
1,504,674	-		IAI47_07130	0.18	-1.4
1,504,674	-		IAI47_07130	0.18	-2.5
1,504,674	-		IAI47_07130	0.18	+0.1
1,504,674	-		IAI47_07130	0.18	+1.2
1,504,674	-		IAI47_07130	0.18	+1.2
1,504,674	-		IAI47_07130	0.18	-1.1
1,504,677	+		IAI47_07130	0.19	+0.1
1,504,677	+		IAI47_07130	0.19	-1.4
1,504,677	+		IAI47_07130	0.19	+0.7
1,504,678	-		IAI47_07130	0.19	-0.3
1,504,678	-		IAI47_07130	0.19	-1.1
1,504,678	-		IAI47_07130	0.19	+0.4
1,504,678	-		IAI47_07130	0.19	+0.9
1,504,678	-		IAI47_07130	0.19	-1.3
1,504,678	-		IAI47_07130	0.19	-1.6
1,504,712	+		IAI47_07130	0.21	-1.7
1,504,713	-		IAI47_07130	0.21	-0.8
1,504,713	-		IAI47_07130	0.21	-2.7
1,504,713	-		IAI47_07130	0.21	+1.1
1,504,713	-		IAI47_07130	0.21	+0.4
1,504,740	+		IAI47_07130	0.23	+1.9
1,504,741	-		IAI47_07130	0.23	-3.0
1,504,775	+		IAI47_07130	0.26	-0.1
1,504,782	+		IAI47_07130	0.26	-0.8
1,504,856	+		IAI47_07130	0.32	+0.5
1,504,856	+		IAI47_07130	0.32	+0.1
1,504,856	+		IAI47_07130	0.32	+0.4
1,504,950	+		IAI47_07130	0.39	+0.3
1,504,950	+		IAI47_07130	0.39	-3.6
1,504,950	+		IAI47_07130	0.39	-2.0
1,504,950	+		IAI47_07130	0.39	-0.8
1,504,950	+		IAI47_07130	0.39	+0.8
1,504,950	+		IAI47_07130	0.39	+1.7
1,504,950	+		IAI47_07130	0.39	-1.4
1,504,951	-		IAI47_07130	0.39	+1.3
1,504,951	-		IAI47_07130	0.39	-1.6
1,504,951	-		IAI47_07130	0.39	-1.3
1,504,951	-		IAI47_07130	0.39	+0.1
1,504,987	+		IAI47_07130	0.41	-0.4