Strain Fitness in Pantoea sp. MT58 around IAI47_05855

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,205,422	-		IAI47_05840	0.52	-0.4
1,205,422	-		IAI47_05840	0.52	-0.5
1,205,422	-		IAI47_05840	0.52	+0.2
1,205,477	+		IAI47_05840	0.65	+1.2
1,205,477	+		IAI47_05840	0.65	-2.5
1,205,477	+		IAI47_05840	0.65	-0.0
1,205,477	+		IAI47_05840	0.65	+1.8
1,205,477	+		IAI47_05840	0.65	+0.2
1,205,477	+		IAI47_05840	0.65	+0.8
1,205,477	+		IAI47_05840	0.65	+2.2
1,205,478	-		IAI47_05840	0.65	-1.6
1,205,478	-		IAI47_05840	0.65	-0.7
1,205,478	-		IAI47_05840	0.65	-0.6
1,205,528	+		IAI47_05840	0.76	-0.1
1,205,528	+		IAI47_05840	0.76	+0.8
1,205,529	-		IAI47_05840	0.76	+0.7
1,205,529	-		IAI47_05840	0.76	-0.6
1,205,622	+				+0.7
1,205,622	+				-1.3
1,205,622	+				-1.8
1,205,622	+				+0.7
1,205,622	+				+0.3
1,205,622	+				-1.7
1,205,623	-				-1.7
1,205,623	-				-3.1
1,205,623	-				-0.1
1,205,623	-				+2.1
1,205,623	-				-2.1
1,205,623	-				+3.0
1,205,633	+				+1.2
1,205,633	+				-1.4
1,205,633	+				-1.0
1,205,634	-				+0.6
1,205,634	-				-0.4
1,205,638	+				+2.1
1,205,639	-				-1.6
1,205,723	-		IAI47_05845	0.31	-2.7
1,205,736	-		IAI47_05845	0.36	+2.5
1,205,768	+		IAI47_05845	0.46	-0.8
1,205,780	+		IAI47_05845	0.50	-1.3
1,205,781	-		IAI47_05845	0.50	-2.3
1,205,814	+		IAI47_05845	0.61	+0.6
1,205,814	+		IAI47_05845	0.61	-1.1
1,205,815	-		IAI47_05845	0.62	+0.4
1,205,815	-		IAI47_05845	0.62	+0.2
1,205,815	-		IAI47_05845	0.62	+3.9
1,205,815	-		IAI47_05845	0.62	+3.7
1,205,859	+		IAI47_05845	0.76	-1.2
1,205,859	+		IAI47_05845	0.76	-2.2
1,205,859	+		IAI47_05845	0.76	-2.0
1,205,859	+		IAI47_05845	0.76	-1.4
1,205,859	+		IAI47_05845	0.76	-1.1
1,205,859	+		IAI47_05845	0.76	+1.1
1,205,859	+		IAI47_05845	0.76	-0.6
1,205,860	-		IAI47_05845	0.77	+2.1
1,205,860	-		IAI47_05845	0.77	+1.4
1,205,860	-		IAI47_05845	0.77	-0.8
1,205,880	-		IAI47_05845	0.83	-0.3
1,205,897	-		IAI47_05845	0.89	-2.5
1,205,936	+				-3.1
1,205,936	+				+0.1
1,205,937	-				-2.7
1,206,082	+				+1.1
1,206,082	+				+1.3
1,206,140	+				-1.1
1,206,140	+				-1.4
1,206,141	-				-0.1
1,206,141	-				-2.3
1,206,141	-				+4.7
1,206,141	-				+1.6
1,206,165	+				-1.8
1,206,165	+				-0.1
1,206,165	+				-0.8
1,206,165	+				-0.3
1,206,165	+				+0.2
1,206,165	+				+1.7
1,206,165	+				-0.8
1,206,166	-				+0.0
1,206,166	-				-0.8
1,206,166	-				+0.8
1,206,166	-				-1.6
1,206,166	-				-0.5
1,206,166	-				+0.2
1,206,166	-				-0.5
1,206,166	-				-2.6
1,206,166	-				-2.0
1,206,166	-				+0.1
1,206,166	-				+1.7
1,206,166	-				-1.4
1,206,166	-				-0.4
1,206,166	-				+0.6
1,206,195	-				-0.8
1,206,195	-				+0.7
1,206,204	+				-1.4
1,206,205	-				+0.1
1,206,205	-				+0.7
1,206,210	+				+1.2
1,206,210	+				+0.2
1,206,210	+				+1.0
1,206,211	-				-0.1
1,206,211	-				+0.4
1,206,211	-				+1.0
1,206,211	-				+0.0
1,206,219	+				-1.5
1,206,219	+				+0.6
1,206,220	-				+0.7
1,206,228	+				+0.3
1,206,228	+				-2.5
1,206,229	-		IAI47_05850	0.10	+0.8
1,206,229	-		IAI47_05850	0.10	+1.7
1,206,229	-		IAI47_05850	0.10	+0.0
1,206,229	-		IAI47_05850	0.10	+0.6
1,206,229	-		IAI47_05850	0.10	-1.4
1,206,229	-		IAI47_05850	0.10	-1.2
1,206,231	+		IAI47_05850	0.11	-2.7
1,206,232	-		IAI47_05850	0.12	-0.2
1,206,256	-		IAI47_05850	0.25	-1.8
1,206,310	+		IAI47_05850	0.56	-1.1
1,206,311	-		IAI47_05850	0.56	-0.7
1,206,329	+		IAI47_05850	0.67	-0.1
1,206,329	+		IAI47_05850	0.67	-3.0
1,206,386	-				-0.0
1,206,386	-				+0.2
1,206,386	-				+1.6
1,206,451	+		IAI47_05855	0.12	-1.2
1,206,451	+		IAI47_05855	0.12	-1.3
1,206,451	+		IAI47_05855	0.12	-1.1
1,206,452	-		IAI47_05855	0.12	-0.8
1,206,582	+		IAI47_05855	0.35	-1.1
1,206,623	+		IAI47_05855	0.42	+0.2
1,206,623	+		IAI47_05855	0.42	-2.0
1,206,623	+		IAI47_05855	0.42	+1.9
1,206,623	+		IAI47_05855	0.42	-1.3
1,206,624	-		IAI47_05855	0.42	-0.4
1,206,624	-		IAI47_05855	0.42	-0.8
1,206,624	-		IAI47_05855	0.42	-0.5
1,206,624	-		IAI47_05855	0.42	-2.3
1,206,624	-		IAI47_05855	0.42	-0.5
1,206,646	+		IAI47_05855	0.46	-2.9
1,206,646	+		IAI47_05855	0.46	-3.1
1,206,647	-		IAI47_05855	0.46	-0.6
1,206,683	+		IAI47_05855	0.52	-2.2
1,206,684	-		IAI47_05855	0.53	-0.1
1,206,684	-		IAI47_05855	0.53	-0.9
1,206,684	-		IAI47_05855	0.53	-0.3
1,206,698	+		IAI47_05855	0.55	+0.8
1,206,698	+		IAI47_05855	0.55	+0.2
1,206,699	-		IAI47_05855	0.55	+1.7
1,206,699	-		IAI47_05855	0.55	+1.5
1,206,726	+		IAI47_05855	0.60	-0.3
1,206,727	-		IAI47_05855	0.60	-1.0
1,206,772	+		IAI47_05855	0.68	-0.2
1,206,773	-		IAI47_05855	0.68	+0.5
1,206,801	-		IAI47_05855	0.73	+1.3
1,206,876	-		IAI47_05855	0.86	-0.0
1,206,876	-		IAI47_05855	0.86	-0.8
1,206,911	+				-0.6
1,206,911	+				-2.5
1,206,912	-				+0.9
1,206,964	+				+0.3
1,206,964	+				-2.6
1,206,964	+				-0.8
1,206,964	+				-2.1
1,206,965	-				-2.8
1,206,965	-				-0.5
1,206,998	+		IAI47_05860	0.34	+1.5
1,206,998	+		IAI47_05860	0.34	-0.7
1,206,998	+		IAI47_05860	0.34	+0.9
1,206,999	-		IAI47_05860	0.35	-0.3
1,206,999	-		IAI47_05860	0.35	+1.7
1,207,015	+		IAI47_05860	0.48	-1.3
1,207,015	+		IAI47_05860	0.48	-1.4
1,207,015	+		IAI47_05860	0.48	-1.6
1,207,015	+		IAI47_05860	0.48	-0.3
1,207,015	+		IAI47_05860	0.48	-3.5
1,207,015	+		IAI47_05860	0.48	-1.3
1,207,015	+		IAI47_05860	0.48	-0.1
1,207,015	+		IAI47_05860	0.48	-0.4
1,207,016	-		IAI47_05860	0.48	+0.5
1,207,016	-		IAI47_05860	0.48	-3.0
1,207,016	-		IAI47_05860	0.48	-0.0
1,207,016	-		IAI47_05860	0.48	-0.8
1,207,016	-		IAI47_05860	0.48	-0.2
1,207,016	-		IAI47_05860	0.48	-1.7
1,207,016	-		IAI47_05860	0.48	-0.6
1,207,016	-		IAI47_05860	0.48	+0.4
1,207,016	-		IAI47_05860	0.48	+1.9
1,207,028	-		IAI47_05860	0.58	-1.6
1,207,028	-		IAI47_05860	0.58	-1.1
1,207,088	+				-2.0
1,207,089	-				+0.0
1,207,133	-		IAI47_05865	0.10	-1.6
1,207,165	+		IAI47_05865	0.15	+2.7
1,207,166	-		IAI47_05865	0.15	-1.3
1,207,166	-		IAI47_05865	0.15	-0.9
1,207,191	+		IAI47_05865	0.19	-0.7
1,207,191	+		IAI47_05865	0.19	-0.3
1,207,191	+		IAI47_05865	0.19	-0.0
1,207,191	+		IAI47_05865	0.19	+0.5
1,207,191	+		IAI47_05865	0.19	-0.1
1,207,191	+		IAI47_05865	0.19	-0.6
1,207,191	+		IAI47_05865	0.19	+1.7
1,207,191	+		IAI47_05865	0.19	-0.1
1,207,191	+		IAI47_05865	0.19	+0.6
1,207,192	-		IAI47_05865	0.20	-1.6
1,207,192	-		IAI47_05865	0.20	+0.7
1,207,192	-		IAI47_05865	0.20	-0.8
1,207,192	-		IAI47_05865	0.20	-0.1
1,207,192	-		IAI47_05865	0.20	-0.2
1,207,192	-		IAI47_05865	0.20	-1.7
1,207,192	-		IAI47_05865	0.20	-0.3
1,207,209	+		IAI47_05865	0.22	+0.3
1,207,209	+		IAI47_05865	0.22	+1.1
1,207,209	+		IAI47_05865	0.22	-0.7
1,207,210	-		IAI47_05865	0.22	-1.2
1,207,210	-		IAI47_05865	0.22	+3.0
1,207,238	+		IAI47_05865	0.27	+0.7
1,207,238	+		IAI47_05865	0.27	+2.3
1,207,239	-		IAI47_05865	0.27	+1.7
1,207,306	+		IAI47_05865	0.38	-1.8
1,207,314	+		IAI47_05865	0.39	+4.3
1,207,314	+		IAI47_05865	0.39	+0.7
1,207,314	+		IAI47_05865	0.39	-1.6
1,207,315	-		IAI47_05865	0.39	+2.5
1,207,365	+		IAI47_05865	0.47	-1.8
1,207,365	+		IAI47_05865	0.47	-0.8
1,207,366	-		IAI47_05865	0.47	+3.7
1,207,366	-		IAI47_05865	0.47	-0.6
1,207,366	-		IAI47_05865	0.47	+0.1
1,207,366	-		IAI47_05865	0.47	+1.3
1,207,391	-		IAI47_05865	0.51	-2.4
1,207,470	+		IAI47_05865	0.64	-1.6
1,207,470	+		IAI47_05865	0.64	+2.5
1,207,471	-		IAI47_05865	0.64	+0.6
1,207,471	-		IAI47_05865	0.64	-0.6
1,207,507	-		IAI47_05865	0.70	-0.9
1,207,507	-		IAI47_05865	0.70	+1.0
1,207,515	+		IAI47_05865	0.71	+3.8
1,207,515	+		IAI47_05865	0.71	-1.1
1,207,515	+		IAI47_05865	0.71	+2.2
1,207,515	+		IAI47_05865	0.71	-0.6
1,207,516	-		IAI47_05865	0.71	+0.7
1,207,521	-		IAI47_05865	0.72	+1.8
1,207,565	+		IAI47_05865	0.79	+0.6
1,207,565	+		IAI47_05865	0.79	-2.1
1,207,566	-		IAI47_05865	0.79	-0.8
1,207,566	-		IAI47_05865	0.79	-0.9
1,207,566	-		IAI47_05865	0.79	+1.4
1,207,566	-		IAI47_05865	0.79	-0.2
1,207,566	-		IAI47_05865	0.79	-0.8
1,207,568	+		IAI47_05865	0.80	+1.7
1,207,569	-		IAI47_05865	0.80	-0.5
1,207,651	+				+0.8
1,207,652	-				+2.2
1,207,695	+				-0.3
1,207,695	+				-0.5
1,207,696	-				-0.3
1,207,697	+				+0.2
1,207,698	-				-2.3
1,207,748	-				+1.2
1,207,803	+				-1.7
1,207,803	+				-0.6
1,207,803	+				+0.6
1,207,804	-				-1.4
1,207,880	+				-1.3
1,207,880	+				+2.1
1,207,880	+				+3.2
1,207,881	-				-1.4
1,207,881	-				-2.3
1,207,881	-				-1.3
1,207,881	-				+2.3
1,207,881	-				-1.0
1,207,886	+				-0.4
1,207,887	-				-1.4
1,207,887	-				+1.2
1,207,889	+				-1.4
1,207,889	+				-1.1
1,207,889	+				-1.0
1,207,889	+				-0.6
1,207,889	+				-0.3
1,207,889	+				+0.4
1,207,889	+				+1.5
1,207,890	-				-0.8
1,207,890	-				+2.7
1,207,890	-				+0.4
1,207,890	-				-1.0
1,207,890	-				-0.1
1,207,912	+				+0.7
1,207,912	+				-2.2
1,207,913	-				+0.4
1,207,913	-				-0.1
1,207,913	-				+0.3