Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04605 and IAI47_04610 are separated by 165 nucleotides IAI47_04610 and IAI47_04615 are separated by 324 nucleotides IAI47_04615 and IAI47_04620 are separated by 144 nucleotides
IAI47_04605: IAI47_04605 - magnesium-translocating P-type ATPase, at 969,013 to 971,715
_04605
IAI47_04610: IAI47_04610 - serine protein kinase RIO, at 971,881 to 972,735
_04610
IAI47_04615: IAI47_04615 - cold shock domain-containing protein, at 973,060 to 973,548
_04615
IAI47_04620: IAI47_04620 - YmjA family protein, at 973,693 to 973,938
_04620
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 970.944 kb on + strand, within IAI47_04605 at 970.945 kb on - strand, within IAI47_04605 at 970.945 kb on - strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.048 kb on + strand, within IAI47_04605 at 971.049 kb on - strand, within IAI47_04605 at 971.049 kb on - strand, within IAI47_04605 at 971.049 kb on - strand, within IAI47_04605 at 971.054 kb on + strand, within IAI47_04605 at 971.054 kb on + strand, within IAI47_04605 at 971.055 kb on - strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.107 kb on + strand, within IAI47_04605 at 971.108 kb on - strand, within IAI47_04605 at 971.108 kb on - strand, within IAI47_04605 at 971.108 kb on - strand, within IAI47_04605 at 971.172 kb on + strand, within IAI47_04605 at 971.173 kb on - strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.224 kb on + strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.225 kb on - strand, within IAI47_04605 at 971.280 kb on + strand, within IAI47_04605 at 971.281 kb on - strand, within IAI47_04605 at 971.281 kb on - strand, within IAI47_04605 at 971.281 kb on - strand, within IAI47_04605 at 971.289 kb on + strand, within IAI47_04605 at 971.290 kb on - strand, within IAI47_04605 at 971.290 kb on - strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.310 kb on + strand, within IAI47_04605 at 971.311 kb on - strand, within IAI47_04605 at 971.311 kb on - strand, within IAI47_04605 at 971.311 kb on - strand, within IAI47_04605 at 971.436 kb on + strand, within IAI47_04605 at 971.437 kb on - strand, within IAI47_04605 at 971.437 kb on - strand, within IAI47_04605 at 971.438 kb on + strand, within IAI47_04605 at 971.439 kb on - strand, within IAI47_04605 at 971.439 kb on - strand, within IAI47_04605 at 971.465 kb on + strand at 971.465 kb on + strand at 971.466 kb on - strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.472 kb on + strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.473 kb on - strand at 971.519 kb on + strand at 971.520 kb on - strand at 971.547 kb on + strand at 971.547 kb on + strand at 971.548 kb on - strand at 971.620 kb on + strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.621 kb on - strand at 971.654 kb on - strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.686 kb on + strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.687 kb on - strand at 971.713 kb on + strand at 971.713 kb on + strand at 971.714 kb on - strand at 971.714 kb on - strand at 971.770 kb on + strand at 971.770 kb on + strand at 971.778 kb on + strand at 971.778 kb on + strand at 971.779 kb on - strand at 971.779 kb on - strand at 971.779 kb on - strand at 971.821 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.836 kb on + strand at 971.837 kb on - strand at 971.837 kb on - strand at 971.868 kb on + strand at 971.869 kb on - strand at 971.872 kb on - strand at 971.882 kb on + strand at 971.883 kb on - strand at 971.921 kb on + strand at 971.921 kb on + strand at 971.921 kb on + strand at 971.921 kb on + strand at 971.922 kb on - strand at 971.922 kb on - strand at 971.924 kb on + strand at 971.924 kb on + strand at 971.924 kb on + strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.925 kb on - strand at 971.967 kb on + strand, within IAI47_04610 at 971.967 kb on + strand, within IAI47_04610 at 971.968 kb on - strand, within IAI47_04610 at 971.968 kb on - strand, within IAI47_04610 at 972.038 kb on + strand, within IAI47_04610 at 972.039 kb on - strand, within IAI47_04610 at 972.039 kb on - strand, within IAI47_04610 at 972.062 kb on + strand, within IAI47_04610 at 972.063 kb on - strand, within IAI47_04610 at 972.072 kb on + strand, within IAI47_04610 at 972.072 kb on + strand, within IAI47_04610 at 972.073 kb on - strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.098 kb on + strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.099 kb on - strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.101 kb on + strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.102 kb on - strand, within IAI47_04610 at 972.118 kb on + strand, within IAI47_04610 at 972.118 kb on + strand, within IAI47_04610 at 972.119 kb on - strand, within IAI47_04610 at 972.119 kb on - strand, within IAI47_04610 at 972.119 kb on - strand, within IAI47_04610 at 972.187 kb on - strand, within IAI47_04610 at 972.187 kb on - strand, within IAI47_04610 at 972.187 kb on - strand, within IAI47_04610 at 972.229 kb on + strand, within IAI47_04610 at 972.229 kb on + strand, within IAI47_04610 at 972.246 kb on + strand, within IAI47_04610 at 972.246 kb on + strand, within IAI47_04610 at 972.246 kb on + strand, within IAI47_04610 at 972.247 kb on - strand, within IAI47_04610 at 972.273 kb on + strand, within IAI47_04610 at 972.273 kb on + strand, within IAI47_04610 at 972.274 kb on - strand, within IAI47_04610 at 972.379 kb on + strand, within IAI47_04610 at 972.380 kb on - strand, within IAI47_04610 at 972.380 kb on - strand, within IAI47_04610 at 972.380 kb on - strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.401 kb on + strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.402 kb on - strand, within IAI47_04610 at 972.412 kb on + strand, within IAI47_04610 at 972.413 kb on - strand, within IAI47_04610 at 972.451 kb on + strand, within IAI47_04610 at 972.486 kb on + strand, within IAI47_04610 at 972.486 kb on + strand, within IAI47_04610 at 972.487 kb on - strand, within IAI47_04610 at 972.543 kb on + strand, within IAI47_04610 at 972.544 kb on - strand, within IAI47_04610 at 972.544 kb on - strand, within IAI47_04610 at 972.544 kb on - strand, within IAI47_04610 at 972.557 kb on + strand, within IAI47_04610 at 972.557 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.579 kb on + strand, within IAI47_04610 at 972.580 kb on - strand, within IAI47_04610 at 972.580 kb on - strand, within IAI47_04610 at 972.580 kb on - strand, within IAI47_04610 at 972.597 kb on + strand, within IAI47_04610 at 972.597 kb on + strand, within IAI47_04610 at 972.598 kb on - strand, within IAI47_04610 at 972.599 kb on + strand, within IAI47_04610 at 972.599 kb on + strand, within IAI47_04610 at 972.600 kb on - strand, within IAI47_04610 at 972.600 kb on - strand, within IAI47_04610 at 972.600 kb on - strand, within IAI47_04610 at 972.640 kb on - strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.641 kb on + strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.642 kb on - strand, within IAI47_04610 at 972.743 kb on + strand at 972.744 kb on - strand at 972.744 kb on - strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.790 kb on + strand at 972.791 kb on - strand at 972.834 kb on + strand at 972.834 kb on + strand at 972.834 kb on + strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.840 kb on + strand at 972.841 kb on - strand at 972.936 kb on - strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.977 kb on - strand at 972.977 kb on - strand at 972.994 kb on + strand at 973.061 kb on + strand at 973.062 kb on - strand at 973.074 kb on + strand at 973.074 kb on + strand at 973.083 kb on + strand at 973.209 kb on + strand, within IAI47_04615 at 973.210 kb on - strand, within IAI47_04615 at 973.249 kb on - strand, within IAI47_04615 at 973.292 kb on + strand, within IAI47_04615 at 973.292 kb on + strand, within IAI47_04615 at 973.293 kb on - strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.370 kb on + strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.452 kb on + strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.509 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.565 kb on + strand at 973.565 kb on + strand at 973.566 kb on - strand at 973.566 kb on - strand at 973.591 kb on + strand at 973.591 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.660 kb on + strand at 973.661 kb on - strand at 973.687 kb on + strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.694 kb on + strand at 973.694 kb on + strand at 973.695 kb on - strand at 973.695 kb on - strand at 973.729 kb on - strand, within IAI47_04620
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 970,944 + IAI47_04605 0.71 -0.2 970,945 - IAI47_04605 0.71 -1.5 970,945 - IAI47_04605 0.71 +0.2 971,048 + IAI47_04605 0.75 -2.3 971,048 + IAI47_04605 0.75 +1.3 971,048 + IAI47_04605 0.75 -0.7 971,048 + IAI47_04605 0.75 -1.3 971,049 - IAI47_04605 0.75 -2.3 971,049 - IAI47_04605 0.75 -0.7 971,049 - IAI47_04605 0.75 +3.2 971,054 + IAI47_04605 0.76 -0.8 971,054 + IAI47_04605 0.76 -1.9 971,055 - IAI47_04605 0.76 -1.8 971,107 + IAI47_04605 0.77 -0.1 971,107 + IAI47_04605 0.77 -0.2 971,107 + IAI47_04605 0.77 -2.3 971,107 + IAI47_04605 0.77 -1.8 971,108 - IAI47_04605 0.78 -1.1 971,108 - IAI47_04605 0.78 -0.7 971,108 - IAI47_04605 0.78 -2.2 971,172 + IAI47_04605 0.80 -0.1 971,173 - IAI47_04605 0.80 +2.2 971,224 + IAI47_04605 0.82 +0.4 971,224 + IAI47_04605 0.82 -0.3 971,224 + IAI47_04605 0.82 +1.8 971,224 + IAI47_04605 0.82 -1.6 971,224 + IAI47_04605 0.82 -2.8 971,225 - IAI47_04605 0.82 +0.9 971,225 - IAI47_04605 0.82 -1.2 971,225 - IAI47_04605 0.82 -3.1 971,225 - IAI47_04605 0.82 -0.5 971,225 - IAI47_04605 0.82 -0.3 971,225 - IAI47_04605 0.82 -0.6 971,280 + IAI47_04605 0.84 +3.4 971,281 - IAI47_04605 0.84 -0.7 971,281 - IAI47_04605 0.84 +0.6 971,281 - IAI47_04605 0.84 -2.6 971,289 + IAI47_04605 0.84 -2.5 971,290 - IAI47_04605 0.84 +0.1 971,290 - IAI47_04605 0.84 +0.1 971,310 + IAI47_04605 0.85 -0.6 971,310 + IAI47_04605 0.85 +0.3 971,310 + IAI47_04605 0.85 -1.2 971,310 + IAI47_04605 0.85 -3.2 971,311 - IAI47_04605 0.85 +0.5 971,311 - IAI47_04605 0.85 +0.1 971,311 - IAI47_04605 0.85 +0.2 971,436 + IAI47_04605 0.90 -1.9 971,437 - IAI47_04605 0.90 -1.2 971,437 - IAI47_04605 0.90 -1.1 971,438 + IAI47_04605 0.90 +0.1 971,439 - IAI47_04605 0.90 -0.8 971,439 - IAI47_04605 0.90 +1.9 971,465 + +0.4 971,465 + -2.4 971,466 - -2.8 971,472 + -2.3 971,472 + -1.6 971,472 + -0.2 971,472 + -0.6 971,472 + +0.9 971,472 + -1.8 971,472 + -2.4 971,472 + -3.0 971,472 + -1.8 971,472 + -1.8 971,473 - 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IAI47_04620 0.15 +0.7
Or see this region's nucleotide sequence