Strain Fitness in Pantoea sp. MT58 around IAI47_03050

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03040 and IAI47_03045 overlap by 4 nucleotidesIAI47_03045 and IAI47_03050 are separated by 74 nucleotidesIAI47_03050 and IAI47_03055 are separated by 330 nucleotides IAI47_03040: IAI47_03040 - TetR/AcrR family transcriptional regulator, at 628,019 to 628,603 _03040 IAI47_03045: IAI47_03045 - G/U mismatch-specific DNA glycosylase, at 628,600 to 629,118 _03045 IAI47_03050: IAI47_03050 - RNA polymerase sigma factor RpoD, at 629,193 to 631,034 _03050 IAI47_03055: IAI47_03055 - DNA primase, at 631,365 to 633,110 _03055 Position (kb) 629 630 631 632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.208 kb on - strand, within IAI47_03040at 628.208 kb on - strand, within IAI47_03040at 628.208 kb on - strand, within IAI47_03040at 628.226 kb on - strand, within IAI47_03040at 628.240 kb on + strand, within IAI47_03040at 628.240 kb on + strand, within IAI47_03040at 628.241 kb on - strand, within IAI47_03040at 628.241 kb on - strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.289 kb on + strand, within IAI47_03040at 628.289 kb on + strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.405 kb on + strand, within IAI47_03040at 628.405 kb on + strand, within IAI47_03040at 628.406 kb on - strand, within IAI47_03040at 628.406 kb on - strand, within IAI47_03040at 628.406 kb on - strand, within IAI47_03040at 628.431 kb on + strand, within IAI47_03040at 628.431 kb on + strand, within IAI47_03040at 628.432 kb on - strand, within IAI47_03040at 628.432 kb on - strand, within IAI47_03040at 628.432 kb on - strand, within IAI47_03040at 628.573 kb on + strandat 628.573 kb on + strandat 628.574 kb on - strandat 628.574 kb on - strandat 628.582 kb on + strandat 628.582 kb on + strandat 628.583 kb on - strandat 628.583 kb on - strandat 628.615 kb on - strandat 628.626 kb on + strandat 628.626 kb on + strandat 628.627 kb on - strandat 628.695 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.821 kb on - strand, within IAI47_03045at 628.821 kb on - strand, within IAI47_03045at 628.821 kb on - strand, within IAI47_03045at 628.906 kb on + strand, within IAI47_03045at 628.907 kb on - strand, within IAI47_03045at 628.907 kb on - strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 629.077 kb on + strandat 629.077 kb on + strandat 629.077 kb on + strandat 629.194 kb on + strandat 629.194 kb on + strandat 629.195 kb on - strandat 629.195 kb on - strandat 629.195 kb on - strandat 631.095 kb on - strandat 631.095 kb on - strandat 631.095 kb on - strandat 631.095 kb on - strandat 631.095 kb on - strandat 631.095 kb on - strandat 631.112 kb on - strandat 631.158 kb on - strandat 631.169 kb on - strandat 631.181 kb on - strandat 631.205 kb on - strandat 631.205 kb on - strandat 631.205 kb on - strandat 631.205 kb on - strandat 631.247 kb on - strandat 631.247 kb on - strandat 631.247 kb on - strandat 631.247 kb on - strandat 631.247 kb on - strandat 631.247 kb on - strandat 631.255 kb on - strandat 631.255 kb on - strandat 631.310 kb on - strandat 631.367 kb on - strandat 631.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
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628,207 + IAI47_03040 0.32 -1.9
628,207 + IAI47_03040 0.32 +0.7
628,207 + IAI47_03040 0.32 -2.1
628,207 + IAI47_03040 0.32 +0.5
628,207 + IAI47_03040 0.32 -1.9
628,207 + IAI47_03040 0.32 +0.3
628,207 + IAI47_03040 0.32 -2.0
628,208 - IAI47_03040 0.32 -1.1
628,208 - IAI47_03040 0.32 +0.5
628,208 - IAI47_03040 0.32 +0.2
628,226 - IAI47_03040 0.35 -0.8
628,240 + IAI47_03040 0.38 -1.7
628,240 + IAI47_03040 0.38 -2.6
628,241 - IAI47_03040 0.38 -1.7
628,241 - IAI47_03040 0.38 +2.2
628,285 + IAI47_03040 0.45 -1.2
628,285 + IAI47_03040 0.45 -0.6
628,285 + IAI47_03040 0.45 -0.6
628,285 + IAI47_03040 0.45 -2.4
628,285 + IAI47_03040 0.45 +0.8
628,285 + IAI47_03040 0.45 -2.7
628,286 - IAI47_03040 0.46 -2.3
628,286 - IAI47_03040 0.46 -0.8
628,286 - IAI47_03040 0.46 -1.9
628,286 - IAI47_03040 0.46 +0.1
628,289 + IAI47_03040 0.46 -0.1
628,289 + IAI47_03040 0.46 +0.6
628,290 - IAI47_03040 0.46 +0.3
628,290 - IAI47_03040 0.46 +2.6
628,290 - IAI47_03040 0.46 -0.7
628,290 - IAI47_03040 0.46 -0.2
628,290 - IAI47_03040 0.46 +2.6
628,290 - IAI47_03040 0.46 -0.5
628,290 - IAI47_03040 0.46 -0.5
628,290 - IAI47_03040 0.46 -1.2
628,405 + IAI47_03040 0.66 +0.8
628,405 + IAI47_03040 0.66 +1.8
628,406 - IAI47_03040 0.66 -0.9
628,406 - IAI47_03040 0.66 -0.6
628,406 - IAI47_03040 0.66 +1.3
628,431 + IAI47_03040 0.70 -2.6
628,431 + IAI47_03040 0.70 -2.5
628,432 - IAI47_03040 0.71 +1.4
628,432 - IAI47_03040 0.71 -2.6
628,432 - IAI47_03040 0.71 +0.5
628,573 + +1.8
628,573 + -1.2
628,574 - -0.1
628,574 - -0.6
628,582 + +1.0
628,582 + -1.9
628,583 - +0.4
628,583 - +1.8
628,615 - +0.8
628,626 + -2.2
628,626 + +0.5
628,627 - -1.5
628,695 + IAI47_03045 0.18 -1.2
628,731 + IAI47_03045 0.25 -1.0
628,731 + IAI47_03045 0.25 +2.7
628,731 + IAI47_03045 0.25 -1.5
628,731 + IAI47_03045 0.25 -0.3
628,732 - IAI47_03045 0.25 -3.6
628,732 - IAI47_03045 0.25 +0.8
628,732 - IAI47_03045 0.25 +2.3
628,732 - IAI47_03045 0.25 -2.2
628,820 + IAI47_03045 0.42 -0.8
628,820 + IAI47_03045 0.42 -1.3
628,820 + IAI47_03045 0.42 -1.2
628,820 + IAI47_03045 0.42 -0.5
628,821 - IAI47_03045 0.43 -1.6
628,821 - IAI47_03045 0.43 +3.4
628,821 - IAI47_03045 0.43 +1.1
628,906 + IAI47_03045 0.59 +0.7
628,907 - IAI47_03045 0.59 +0.8
628,907 - IAI47_03045 0.59 +0.6
628,994 + IAI47_03045 0.76 -0.3
628,994 + IAI47_03045 0.76 -1.7
628,994 + IAI47_03045 0.76 -0.9
628,994 + IAI47_03045 0.76 +1.8
628,994 + IAI47_03045 0.76 -2.1
628,994 + IAI47_03045 0.76 +0.7
628,995 - IAI47_03045 0.76 +2.0
628,995 - IAI47_03045 0.76 -1.5
628,995 - IAI47_03045 0.76 +2.7
628,995 - IAI47_03045 0.76 -3.6
628,995 - IAI47_03045 0.76 -2.7
628,998 + IAI47_03045 0.77 +1.1
628,998 + IAI47_03045 0.77 +1.1
628,998 + IAI47_03045 0.77 -1.6
628,998 + IAI47_03045 0.77 +0.2
628,998 + IAI47_03045 0.77 +3.2
628,998 + IAI47_03045 0.77 +1.5
628,998 + IAI47_03045 0.77 +0.4
628,999 - IAI47_03045 0.77 -1.2
628,999 - IAI47_03045 0.77 -0.6
628,999 - IAI47_03045 0.77 -0.2
628,999 - IAI47_03045 0.77 +0.8
628,999 - IAI47_03045 0.77 -2.9
628,999 - IAI47_03045 0.77 -2.7
628,999 - IAI47_03045 0.77 -1.5
628,999 - IAI47_03045 0.77 +0.7
628,999 - IAI47_03045 0.77 -0.1
628,999 - IAI47_03045 0.77 +1.4
628,999 - IAI47_03045 0.77 +1.2
629,077 + +2.9
629,077 + -0.4
629,077 + +3.1
629,194 + +0.7
629,194 + -0.7
629,195 - +0.7
629,195 - +1.2
629,195 - +0.4
631,095 - -0.2
631,095 - -1.3
631,095 - +1.0
631,095 - -3.3
631,095 - -2.2
631,095 - +3.2
631,112 - -1.2
631,158 - +2.2
631,169 - +1.5
631,181 - +0.1
631,205 - +1.6
631,205 - +0.3
631,205 - -0.5
631,205 - +1.3
631,247 - -0.3
631,247 - -0.0
631,247 - +1.1
631,247 - +1.3
631,247 - -2.1
631,247 - +1.8
631,255 - +1.8
631,255 - +0.8
631,310 - +0.2
631,367 - +1.7
631,367 - -0.4

Or see this region's nucleotide sequence