Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19275

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19270 and CSW01_19275 are separated by 301 nucleotidesCSW01_19275 and CSW01_19280 overlap by 4 nucleotidesCSW01_19280 and CSW01_19285 are separated by 35 nucleotides CSW01_19270: CSW01_19270 - 3-deoxy-7-phosphoheptulonate synthase, at 984,714 to 985,766 _19270 CSW01_19275: CSW01_19275 - amino acid ABC transporter ATP-binding protein, at 986,068 to 986,787 _19275 CSW01_19280: CSW01_19280 - amino acid ABC transporter permease, at 986,784 to 987,584 _19280 CSW01_19285: CSW01_19285 - amino acid ABC transporter substrate-binding protein, at 987,620 to 988,456 _19285 Position (kb) 986 987Strain fitness (log2 ratio) -2 -1 0 1 2at 985.081 kb on - strand, within CSW01_19270at 985.138 kb on + strand, within CSW01_19270at 985.165 kb on + strand, within CSW01_19270at 985.219 kb on + strand, within CSW01_19270at 985.228 kb on - strand, within CSW01_19270at 985.233 kb on - strand, within CSW01_19270at 985.236 kb on + strand, within CSW01_19270at 985.265 kb on + strand, within CSW01_19270at 985.265 kb on + strand, within CSW01_19270at 985.307 kb on - strand, within CSW01_19270at 985.423 kb on - strand, within CSW01_19270at 985.446 kb on + strand, within CSW01_19270at 985.601 kb on + strand, within CSW01_19270at 985.671 kb on - strandat 985.727 kb on - strandat 985.727 kb on - strandat 985.810 kb on + strandat 985.818 kb on - strandat 985.966 kb on + strandat 985.966 kb on + strandat 985.966 kb on + strandat 985.966 kb on + strandat 985.966 kb on + strandat 985.974 kb on - strandat 986.372 kb on + strand, within CSW01_19275at 986.382 kb on - strand, within CSW01_19275at 986.497 kb on - strand, within CSW01_19275at 986.505 kb on + strand, within CSW01_19275at 986.620 kb on + strand, within CSW01_19275at 986.620 kb on + strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.628 kb on - strand, within CSW01_19275at 986.655 kb on - strand, within CSW01_19275at 986.716 kb on + strandat 986.717 kb on - strandat 986.888 kb on + strand, within CSW01_19280at 986.888 kb on + strand, within CSW01_19280at 986.896 kb on - strand, within CSW01_19280at 986.896 kb on - strand, within CSW01_19280at 986.896 kb on - strand, within CSW01_19280at 987.019 kb on - strand, within CSW01_19280at 987.038 kb on - strand, within CSW01_19280at 987.078 kb on + strand, within CSW01_19280at 987.086 kb on - strand, within CSW01_19280at 987.113 kb on - strand, within CSW01_19280at 987.148 kb on - strand, within CSW01_19280at 987.199 kb on + strand, within CSW01_19280at 987.199 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.209 kb on + strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.217 kb on - strand, within CSW01_19280at 987.226 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.246 kb on + strand, within CSW01_19280at 987.264 kb on - strand, within CSW01_19280at 987.275 kb on - strand, within CSW01_19280at 987.289 kb on + strand, within CSW01_19280at 987.289 kb on + strand, within CSW01_19280at 987.500 kb on + strand, within CSW01_19280at 987.517 kb on - strandat 987.517 kb on - strandat 987.538 kb on - strandat 987.549 kb on + strandat 987.558 kb on - strandat 987.644 kb on + strandat 987.735 kb on + strand, within CSW01_19285at 987.745 kb on + strand, within CSW01_19285at 987.753 kb on - strand, within CSW01_19285

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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985,081 - CSW01_19270 0.35 +0.6
985,138 + CSW01_19270 0.40 -1.1
985,165 + CSW01_19270 0.43 +0.4
985,219 + CSW01_19270 0.48 -0.4
985,228 - CSW01_19270 0.49 -1.0
985,233 - CSW01_19270 0.49 +1.8
985,236 + CSW01_19270 0.50 -1.9
985,265 + CSW01_19270 0.52 -1.2
985,265 + CSW01_19270 0.52 -1.3
985,307 - CSW01_19270 0.56 +0.9
985,423 - CSW01_19270 0.67 -0.4
985,446 + CSW01_19270 0.70 -0.4
985,601 + CSW01_19270 0.84 -0.9
985,671 - +0.1
985,727 - -0.3
985,727 - -0.5
985,810 + +0.5
985,818 - -0.9
985,966 + +0.0
985,966 + -0.2
985,966 + -0.3
985,966 + +0.4
985,966 + +0.1
985,974 - +0.1
986,372 + CSW01_19275 0.42 -0.2
986,382 - CSW01_19275 0.44 +0.1
986,497 - CSW01_19275 0.60 -0.7
986,505 + CSW01_19275 0.61 -0.3
986,620 + CSW01_19275 0.77 -0.7
986,620 + CSW01_19275 0.77 +0.2
986,628 - CSW01_19275 0.78 -0.2
986,628 - CSW01_19275 0.78 +0.2
986,628 - CSW01_19275 0.78 -1.2
986,628 - CSW01_19275 0.78 -0.0
986,655 - CSW01_19275 0.82 -0.8
986,716 + -1.3
986,717 - -2.3
986,888 + CSW01_19280 0.13 +0.2
986,888 + CSW01_19280 0.13 -0.7
986,896 - CSW01_19280 0.14 +0.9
986,896 - CSW01_19280 0.14 +1.1
986,896 - CSW01_19280 0.14 -1.3
987,019 - CSW01_19280 0.29 -0.2
987,038 - CSW01_19280 0.32 +0.2
987,078 + CSW01_19280 0.37 -0.1
987,086 - CSW01_19280 0.38 +0.4
987,113 - CSW01_19280 0.41 -0.2
987,148 - CSW01_19280 0.45 -0.2
987,199 + CSW01_19280 0.52 -0.4
987,199 + CSW01_19280 0.52 -0.3
987,209 + CSW01_19280 0.53 +0.8
987,209 + CSW01_19280 0.53 +0.1
987,209 + CSW01_19280 0.53 -0.5
987,209 + CSW01_19280 0.53 +0.4
987,209 + CSW01_19280 0.53 +0.1
987,209 + CSW01_19280 0.53 +0.4
987,217 - CSW01_19280 0.54 -1.0
987,217 - CSW01_19280 0.54 +0.7
987,217 - CSW01_19280 0.54 -0.3
987,217 - CSW01_19280 0.54 +0.5
987,217 - CSW01_19280 0.54 -1.1
987,217 - CSW01_19280 0.54 -0.3
987,217 - CSW01_19280 0.54 -0.0
987,217 - CSW01_19280 0.54 -0.6
987,226 + CSW01_19280 0.55 -0.1
987,246 + CSW01_19280 0.58 -1.7
987,246 + CSW01_19280 0.58 -0.4
987,246 + CSW01_19280 0.58 -0.5
987,246 + CSW01_19280 0.58 -0.3
987,264 - CSW01_19280 0.60 -0.3
987,275 - CSW01_19280 0.61 +1.1
987,289 + CSW01_19280 0.63 +0.0
987,289 + CSW01_19280 0.63 -0.8
987,500 + CSW01_19280 0.89 -1.2
987,517 - -0.7
987,517 - -1.0
987,538 - -0.5
987,549 + +0.9
987,558 - -1.0
987,644 + +0.2
987,735 + CSW01_19285 0.14 -0.4
987,745 + CSW01_19285 0.15 +1.8
987,753 - CSW01_19285 0.16 +0.1

Or see this region's nucleotide sequence