Experiment: LB_Aerobic_120MIN_ZN10B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19225 and CSW01_19230 are separated by 204 nucleotides CSW01_19230 and CSW01_19235 are separated by 419 nucleotides
CSW01_19225: CSW01_19225 - transcriptional regulator, at 972,856 to 973,692
_19225
CSW01_19230: CSW01_19230 - maltoporin, at 973,897 to 975,147
_19230
CSW01_19235: CSW01_19235 - glycogen debranching enzyme GlgX, at 975,567 to 977,537
_19235
Position (kb) 973
974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 972.899 kb on + strand at 972.907 kb on - strand at 972.958 kb on + strand, within CSW01_19225 at 972.958 kb on + strand, within CSW01_19225 at 972.966 kb on - strand, within CSW01_19225 at 973.217 kb on + strand, within CSW01_19225 at 973.238 kb on + strand, within CSW01_19225 at 973.335 kb on + strand, within CSW01_19225 at 973.335 kb on + strand, within CSW01_19225 at 973.350 kb on + strand, within CSW01_19225 at 973.350 kb on + strand, within CSW01_19225 at 973.358 kb on - strand, within CSW01_19225 at 973.358 kb on - strand, within CSW01_19225 at 973.374 kb on - strand, within CSW01_19225 at 973.422 kb on + strand, within CSW01_19225 at 973.444 kb on + strand, within CSW01_19225 at 973.525 kb on + strand, within CSW01_19225 at 973.602 kb on - strand, within CSW01_19225 at 973.604 kb on + strand, within CSW01_19225 at 973.604 kb on + strand, within CSW01_19225 at 973.604 kb on + strand, within CSW01_19225 at 973.604 kb on + strand, within CSW01_19225 at 973.604 kb on + strand, within CSW01_19225 at 973.604 kb on + strand, within CSW01_19225 at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.612 kb on - strand at 973.631 kb on + strand at 973.631 kb on + strand at 973.639 kb on - strand at 973.639 kb on - strand at 973.679 kb on + strand at 973.687 kb on - strand at 973.727 kb on + strand at 973.727 kb on + strand at 973.877 kb on - strand at 973.890 kb on + strand at 973.956 kb on - strand at 973.999 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.001 kb on + strand at 974.009 kb on - strand at 974.009 kb on - strand at 974.009 kb on - strand at 974.009 kb on - strand at 974.009 kb on - strand at 974.009 kb on - strand at 974.009 kb on - strand at 974.009 kb on - strand at 974.023 kb on + strand, within CSW01_19230 at 974.033 kb on + strand, within CSW01_19230 at 974.033 kb on + strand, within CSW01_19230 at 974.033 kb on + strand, within CSW01_19230 at 974.033 kb on + strand, within CSW01_19230 at 974.033 kb on + strand, within CSW01_19230 at 974.033 kb on + strand, within CSW01_19230 at 974.033 kb on + strand, within CSW01_19230 at 974.041 kb on - strand, within CSW01_19230 at 974.056 kb on - strand, within CSW01_19230 at 974.119 kb on - strand, within CSW01_19230 at 974.124 kb on + strand, within CSW01_19230 at 974.124 kb on + strand, within CSW01_19230 at 974.168 kb on - strand, within CSW01_19230 at 974.200 kb on + strand, within CSW01_19230 at 974.208 kb on - strand, within CSW01_19230 at 974.237 kb on + strand, within CSW01_19230 at 974.257 kb on + strand, within CSW01_19230 at 974.273 kb on - strand, within CSW01_19230 at 974.273 kb on - strand, within CSW01_19230 at 974.284 kb on - strand, within CSW01_19230 at 974.378 kb on - strand, within CSW01_19230 at 974.417 kb on + strand, within CSW01_19230 at 974.425 kb on - strand, within CSW01_19230 at 974.469 kb on + strand, within CSW01_19230 at 974.501 kb on - strand, within CSW01_19230 at 974.545 kb on + strand, within CSW01_19230 at 974.545 kb on + strand, within CSW01_19230 at 974.552 kb on + strand, within CSW01_19230 at 974.553 kb on - strand, within CSW01_19230 at 974.562 kb on + strand, within CSW01_19230 at 974.570 kb on - strand, within CSW01_19230 at 974.580 kb on + strand, within CSW01_19230 at 974.594 kb on - strand, within CSW01_19230 at 974.663 kb on - strand, within CSW01_19230 at 974.675 kb on - strand, within CSW01_19230 at 974.689 kb on + strand, within CSW01_19230 at 974.726 kb on + strand, within CSW01_19230 at 974.757 kb on - strand, within CSW01_19230 at 974.782 kb on + strand, within CSW01_19230 at 974.782 kb on + strand, within CSW01_19230 at 974.790 kb on - strand, within CSW01_19230 at 974.813 kb on + strand, within CSW01_19230 at 974.818 kb on + strand, within CSW01_19230 at 974.821 kb on - strand, within CSW01_19230 at 974.843 kb on - strand, within CSW01_19230 at 974.843 kb on - strand, within CSW01_19230 at 974.873 kb on - strand, within CSW01_19230 at 974.913 kb on + strand, within CSW01_19230 at 974.931 kb on - strand, within CSW01_19230 at 974.952 kb on - strand, within CSW01_19230 at 975.006 kb on - strand, within CSW01_19230 at 975.014 kb on + strand, within CSW01_19230 at 975.022 kb on - strand, within CSW01_19230 at 975.022 kb on - strand, within CSW01_19230 at 975.022 kb on - strand, within CSW01_19230 at 975.057 kb on - strand at 975.066 kb on - strand at 975.220 kb on + strand at 975.256 kb on - strand at 975.260 kb on - strand at 975.260 kb on - strand at 975.272 kb on + strand at 975.282 kb on + strand at 975.424 kb on + strand at 975.425 kb on + strand at 975.433 kb on - strand at 975.433 kb on - strand at 975.440 kb on - strand at 975.455 kb on - strand at 975.509 kb on + strand at 975.533 kb on - strand at 975.537 kb on + strand at 975.581 kb on + strand at 975.581 kb on + strand at 975.581 kb on + strand at 975.589 kb on - strand at 975.621 kb on - strand at 975.621 kb on - strand at 975.629 kb on - strand at 975.674 kb on + strand at 975.674 kb on + strand at 975.674 kb on + strand at 975.682 kb on - strand at 975.682 kb on - strand at 975.692 kb on - strand at 975.719 kb on - strand at 975.736 kb on - strand at 975.786 kb on - strand, within CSW01_19235 at 975.848 kb on + strand, within CSW01_19235 at 975.848 kb on + strand, within CSW01_19235 at 975.848 kb on + strand, within CSW01_19235 at 975.848 kb on + strand, within CSW01_19235 at 975.848 kb on + strand, within CSW01_19235 at 975.848 kb on + strand, within CSW01_19235 at 975.848 kb on + strand, within CSW01_19235 at 975.856 kb on - strand, within CSW01_19235 at 975.856 kb on - strand, within CSW01_19235 at 975.856 kb on - strand, within CSW01_19235 at 975.856 kb on - strand, within CSW01_19235 at 975.856 kb on - strand, within CSW01_19235 at 975.856 kb on - strand, within CSW01_19235 at 975.890 kb on + strand, within CSW01_19235 at 975.890 kb on + strand, within CSW01_19235 at 975.890 kb on + strand, within CSW01_19235 at 975.898 kb on - strand, within CSW01_19235 at 975.898 kb on - strand, within CSW01_19235 at 975.898 kb on - strand, within CSW01_19235 at 975.990 kb on + strand, within CSW01_19235 at 975.998 kb on - strand, within CSW01_19235 at 975.999 kb on - strand, within CSW01_19235 at 976.060 kb on - strand, within CSW01_19235 at 976.106 kb on + strand, within CSW01_19235 at 976.141 kb on - strand, within CSW01_19235
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B remove 972,899 + -1.0 972,907 - -0.4 972,958 + CSW01_19225 0.12 -0.4 972,958 + CSW01_19225 0.12 +0.2 972,966 - CSW01_19225 0.13 +0.2 973,217 + CSW01_19225 0.43 +0.0 973,238 + CSW01_19225 0.46 -0.6 973,335 + CSW01_19225 0.57 -1.1 973,335 + CSW01_19225 0.57 +0.1 973,350 + CSW01_19225 0.59 -1.3 973,350 + CSW01_19225 0.59 +0.2 973,358 - CSW01_19225 0.60 +0.1 973,358 - CSW01_19225 0.60 -0.3 973,374 - CSW01_19225 0.62 +0.4 973,422 + CSW01_19225 0.68 +0.2 973,444 + CSW01_19225 0.70 +0.4 973,525 + CSW01_19225 0.80 -0.0 973,602 - CSW01_19225 0.89 +0.3 973,604 + CSW01_19225 0.89 -1.8 973,604 + CSW01_19225 0.89 +0.1 973,604 + CSW01_19225 0.89 +0.2 973,604 + CSW01_19225 0.89 +0.9 973,604 + CSW01_19225 0.89 +0.6 973,604 + CSW01_19225 0.89 -2.3 973,612 - -0.8 973,612 - +1.1 973,612 - -0.6 973,612 - +0.4 973,612 - -0.4 973,612 - -0.2 973,612 - +1.2 973,612 - +0.5 973,612 - -0.5 973,612 - -0.3 973,631 + +0.8 973,631 + +0.3 973,639 - -0.0 973,639 - -1.1 973,679 + +0.7 973,687 - -0.0 973,727 + -0.8 973,727 + +0.7 973,877 - +0.1 973,890 + +0.9 973,956 - -0.4 973,999 + -0.1 974,001 + -0.0 974,001 + +0.4 974,001 + -0.8 974,001 + -0.2 974,001 + -0.6 974,001 + -0.4 974,001 + -0.3 974,001 + -0.2 974,001 + -0.2 974,001 + +0.9 974,001 + +0.1 974,009 - +2.8 974,009 - +0.6 974,009 - +1.0 974,009 - -0.9 974,009 - -0.1 974,009 - -0.6 974,009 - -0.3 974,009 - -0.3 974,023 + CSW01_19230 0.10 +0.2 974,033 + CSW01_19230 0.11 +0.3 974,033 + CSW01_19230 0.11 -0.2 974,033 + CSW01_19230 0.11 -0.1 974,033 + CSW01_19230 0.11 -1.4 974,033 + CSW01_19230 0.11 +0.2 974,033 + CSW01_19230 0.11 -0.9 974,033 + CSW01_19230 0.11 +0.2 974,041 - CSW01_19230 0.12 +0.6 974,056 - CSW01_19230 0.13 -0.1 974,119 - CSW01_19230 0.18 +0.4 974,124 + CSW01_19230 0.18 -0.3 974,124 + CSW01_19230 0.18 -0.1 974,168 - CSW01_19230 0.22 -0.1 974,200 + CSW01_19230 0.24 +1.0 974,208 - CSW01_19230 0.25 +0.6 974,237 + CSW01_19230 0.27 +0.3 974,257 + CSW01_19230 0.29 +0.2 974,273 - CSW01_19230 0.30 +0.4 974,273 - CSW01_19230 0.30 -0.7 974,284 - CSW01_19230 0.31 +0.5 974,378 - CSW01_19230 0.38 +0.0 974,417 + CSW01_19230 0.42 -1.1 974,425 - CSW01_19230 0.42 +2.5 974,469 + CSW01_19230 0.46 -0.7 974,501 - CSW01_19230 0.48 -0.2 974,545 + CSW01_19230 0.52 -1.1 974,545 + CSW01_19230 0.52 +1.1 974,552 + CSW01_19230 0.52 +0.0 974,553 - CSW01_19230 0.52 +0.5 974,562 + CSW01_19230 0.53 -0.8 974,570 - CSW01_19230 0.54 +0.2 974,580 + CSW01_19230 0.55 -0.4 974,594 - CSW01_19230 0.56 -0.3 974,663 - CSW01_19230 0.61 +1.8 974,675 - CSW01_19230 0.62 +0.2 974,689 + CSW01_19230 0.63 +0.8 974,726 + CSW01_19230 0.66 +0.7 974,757 - CSW01_19230 0.69 +0.2 974,782 + CSW01_19230 0.71 -2.8 974,782 + CSW01_19230 0.71 +0.0 974,790 - CSW01_19230 0.71 +0.0 974,813 + CSW01_19230 0.73 -0.3 974,818 + CSW01_19230 0.74 -0.2 974,821 - CSW01_19230 0.74 +1.2 974,843 - CSW01_19230 0.76 -0.1 974,843 - CSW01_19230 0.76 -0.3 974,873 - CSW01_19230 0.78 +0.6 974,913 + CSW01_19230 0.81 -1.3 974,931 - CSW01_19230 0.83 -0.6 974,952 - CSW01_19230 0.84 -0.1 975,006 - CSW01_19230 0.89 +0.4 975,014 + CSW01_19230 0.89 -1.6 975,022 - CSW01_19230 0.90 -0.7 975,022 - CSW01_19230 0.90 +0.1 975,022 - CSW01_19230 0.90 -0.1 975,057 - +0.4 975,066 - +0.2 975,220 + -0.3 975,256 - +0.4 975,260 - +1.8 975,260 - +0.2 975,272 + -0.2 975,282 + -1.1 975,424 + +0.6 975,425 + -0.7 975,433 - +0.0 975,433 - -0.6 975,440 - -0.3 975,455 - +0.1 975,509 + -0.1 975,533 - -0.6 975,537 + +0.0 975,581 + -2.0 975,581 + +1.3 975,581 + -0.3 975,589 - +0.9 975,621 - -0.0 975,621 - +2.0 975,629 - +0.0 975,674 + +0.6 975,674 + -0.1 975,674 + +0.2 975,682 - -0.0 975,682 - -0.2 975,692 - -0.0 975,719 - +0.2 975,736 - -0.0 975,786 - CSW01_19235 0.11 +0.0 975,848 + CSW01_19235 0.14 -0.5 975,848 + CSW01_19235 0.14 +0.5 975,848 + CSW01_19235 0.14 +0.6 975,848 + CSW01_19235 0.14 -0.4 975,848 + CSW01_19235 0.14 +0.2 975,848 + CSW01_19235 0.14 +0.2 975,848 + CSW01_19235 0.14 -0.3 975,856 - CSW01_19235 0.15 -0.8 975,856 - CSW01_19235 0.15 +1.4 975,856 - CSW01_19235 0.15 -0.1 975,856 - CSW01_19235 0.15 +0.4 975,856 - CSW01_19235 0.15 +0.8 975,856 - CSW01_19235 0.15 -0.8 975,890 + CSW01_19235 0.16 -0.3 975,890 + CSW01_19235 0.16 +0.2 975,890 + CSW01_19235 0.16 +0.2 975,898 - CSW01_19235 0.17 +1.0 975,898 - CSW01_19235 0.17 -0.6 975,898 - CSW01_19235 0.17 -0.3 975,990 + CSW01_19235 0.21 -1.3 975,998 - CSW01_19235 0.22 +0.2 975,999 - CSW01_19235 0.22 +0.1 976,060 - CSW01_19235 0.25 -0.9 976,106 + CSW01_19235 0.27 -0.0 976,141 - CSW01_19235 0.29 +0.1
Or see this region's nucleotide sequence