Experiment: LB_Aerobic_120MIN_ZN10B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18680 and CSW01_18685 are separated by 24 nucleotides CSW01_18685 and CSW01_18690 are separated by 23 nucleotides CSW01_18690 and CSW01_18695 are separated by 256 nucleotides
CSW01_18680: CSW01_18680 - heme utilization protein HutZ, at 861,171 to 861,701
_18680
CSW01_18685: CSW01_18685 - heme utilization cystosolic carrier protein HutX, at 861,726 to 862,229
_18685
CSW01_18690: CSW01_18690 - heme anaerobic degradation radical SAM methyltransferase ChuW/HutW, at 862,253 to 863,620
_18690
CSW01_18695: CSW01_18695 - energy transducer TonB, at 863,877 to 864,626
_18695
Position (kb) 862
863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 861.273 kb on + strand, within CSW01_18680 at 861.297 kb on - strand, within CSW01_18680 at 861.306 kb on + strand, within CSW01_18680 at 861.518 kb on - strand, within CSW01_18680 at 861.591 kb on + strand, within CSW01_18680 at 861.638 kb on - strand, within CSW01_18680 at 861.667 kb on - strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.751 kb on + strand at 861.759 kb on - strand at 861.759 kb on - strand at 862.131 kb on + strand, within CSW01_18685 at 862.300 kb on + strand at 862.302 kb on + strand at 862.305 kb on - strand at 862.305 kb on - strand at 862.320 kb on - strand at 862.351 kb on + strand at 862.359 kb on - strand at 862.361 kb on + strand at 862.375 kb on + strand at 862.411 kb on + strand, within CSW01_18690 at 862.411 kb on + strand, within CSW01_18690 at 862.419 kb on - strand, within CSW01_18690 at 862.514 kb on + strand, within CSW01_18690 at 862.670 kb on - strand, within CSW01_18690 at 862.684 kb on - strand, within CSW01_18690 at 862.714 kb on + strand, within CSW01_18690 at 862.840 kb on + strand, within CSW01_18690 at 862.847 kb on + strand, within CSW01_18690 at 862.884 kb on + strand, within CSW01_18690 at 862.940 kb on - strand, within CSW01_18690 at 863.059 kb on - strand, within CSW01_18690 at 863.082 kb on - strand, within CSW01_18690 at 863.090 kb on + strand, within CSW01_18690 at 863.097 kb on + strand, within CSW01_18690 at 863.122 kb on + strand, within CSW01_18690 at 863.125 kb on + strand, within CSW01_18690 at 863.202 kb on + strand, within CSW01_18690 at 863.226 kb on + strand, within CSW01_18690 at 863.229 kb on - strand, within CSW01_18690 at 863.250 kb on - strand, within CSW01_18690 at 863.286 kb on + strand, within CSW01_18690 at 863.294 kb on - strand, within CSW01_18690 at 863.294 kb on - strand, within CSW01_18690 at 863.555 kb on - strand at 863.733 kb on - strand at 863.891 kb on + strand at 863.895 kb on + strand at 863.917 kb on + strand at 863.976 kb on + strand, within CSW01_18695 at 864.136 kb on + strand, within CSW01_18695 at 864.143 kb on + strand, within CSW01_18695 at 864.206 kb on + strand, within CSW01_18695 at 864.294 kb on - strand, within CSW01_18695 at 864.316 kb on - strand, within CSW01_18695 at 864.380 kb on + strand, within CSW01_18695 at 864.427 kb on + strand, within CSW01_18695 at 864.532 kb on + strand, within CSW01_18695 at 864.540 kb on - strand, within CSW01_18695
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B remove 861,273 + CSW01_18680 0.19 +0.4 861,297 - CSW01_18680 0.24 -0.4 861,306 + CSW01_18680 0.25 +0.3 861,518 - CSW01_18680 0.65 +1.8 861,591 + CSW01_18680 0.79 +0.6 861,638 - CSW01_18680 0.88 -0.4 861,667 - -0.1 861,751 + +0.5 861,751 + +1.1 861,751 + +0.4 861,751 + +0.2 861,751 + +0.3 861,751 + -1.1 861,759 - -0.4 861,759 - -0.2 862,131 + CSW01_18685 0.80 +0.2 862,300 + -0.3 862,302 + -0.2 862,305 - +0.1 862,305 - +0.4 862,320 - -0.1 862,351 + +1.6 862,359 - +0.9 862,361 + -1.8 862,375 + +0.8 862,411 + CSW01_18690 0.12 +1.2 862,411 + CSW01_18690 0.12 +0.8 862,419 - CSW01_18690 0.12 -1.9 862,514 + CSW01_18690 0.19 -0.9 862,670 - CSW01_18690 0.30 +0.5 862,684 - CSW01_18690 0.32 -0.3 862,714 + CSW01_18690 0.34 +1.0 862,840 + CSW01_18690 0.43 +0.4 862,847 + CSW01_18690 0.43 -0.4 862,884 + CSW01_18690 0.46 +0.3 862,940 - CSW01_18690 0.50 +0.4 863,059 - CSW01_18690 0.59 +0.3 863,082 - CSW01_18690 0.61 -0.6 863,090 + CSW01_18690 0.61 -0.2 863,097 + CSW01_18690 0.62 -0.0 863,122 + CSW01_18690 0.64 +0.2 863,125 + CSW01_18690 0.64 +0.9 863,202 + CSW01_18690 0.69 -1.6 863,226 + CSW01_18690 0.71 +0.2 863,229 - CSW01_18690 0.71 +0.2 863,250 - CSW01_18690 0.73 +0.1 863,286 + CSW01_18690 0.76 +0.1 863,294 - CSW01_18690 0.76 -0.2 863,294 - CSW01_18690 0.76 +0.2 863,555 - +0.1 863,733 - +1.1 863,891 + -0.8 863,895 + +0.6 863,917 + -0.1 863,976 + CSW01_18695 0.13 -2.8 864,136 + CSW01_18695 0.35 +0.6 864,143 + CSW01_18695 0.35 -0.2 864,206 + CSW01_18695 0.44 +0.5 864,294 - CSW01_18695 0.56 +2.4 864,316 - CSW01_18695 0.59 +0.3 864,380 + CSW01_18695 0.67 +0.1 864,427 + CSW01_18695 0.73 -0.7 864,532 + CSW01_18695 0.87 +0.4 864,540 - CSW01_18695 0.88 +0.1
Or see this region's nucleotide sequence