Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18595

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18590 and CSW01_18595 overlap by 7 nucleotidesCSW01_18595 and CSW01_18600 are separated by 77 nucleotides CSW01_18590: CSW01_18590 - LysR family transcriptional regulator, at 840,323 to 841,261 _18590 CSW01_18595: CSW01_18595 - VOC family protein, at 841,255 to 841,638 _18595 CSW01_18600: CSW01_18600 - PepSY domain-containing protein, at 841,716 to 843,128 _18600 Position (kb) 841 842Strain fitness (log2 ratio) -2 -1 0 1 2at 840.434 kb on - strand, within CSW01_18590at 840.437 kb on - strand, within CSW01_18590at 840.445 kb on + strand, within CSW01_18590at 840.474 kb on + strand, within CSW01_18590at 840.533 kb on - strand, within CSW01_18590at 840.547 kb on - strand, within CSW01_18590at 840.843 kb on + strand, within CSW01_18590at 840.862 kb on + strand, within CSW01_18590at 840.862 kb on + strand, within CSW01_18590at 840.915 kb on - strand, within CSW01_18590at 840.972 kb on + strand, within CSW01_18590at 840.980 kb on - strand, within CSW01_18590at 840.980 kb on - strand, within CSW01_18590at 841.004 kb on - strand, within CSW01_18590at 841.092 kb on - strand, within CSW01_18590at 841.227 kb on + strandat 841.227 kb on + strandat 841.289 kb on + strandat 841.356 kb on - strand, within CSW01_18595at 841.398 kb on + strand, within CSW01_18595at 841.552 kb on - strand, within CSW01_18595at 841.552 kb on - strand, within CSW01_18595at 841.576 kb on + strand, within CSW01_18595at 841.660 kb on - strandat 841.677 kb on + strandat 841.715 kb on - strandat 841.790 kb on - strandat 841.816 kb on + strandat 841.874 kb on + strand, within CSW01_18600at 841.874 kb on + strand, within CSW01_18600at 841.881 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.923 kb on + strand, within CSW01_18600at 841.944 kb on - strand, within CSW01_18600at 841.965 kb on - strand, within CSW01_18600at 842.002 kb on + strand, within CSW01_18600at 842.194 kb on + strand, within CSW01_18600at 842.204 kb on + strand, within CSW01_18600at 842.212 kb on - strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.218 kb on + strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.226 kb on - strand, within CSW01_18600at 842.248 kb on - strand, within CSW01_18600at 842.282 kb on + strand, within CSW01_18600at 842.401 kb on + strand, within CSW01_18600at 842.401 kb on + strand, within CSW01_18600at 842.422 kb on + strand, within CSW01_18600at 842.494 kb on + strand, within CSW01_18600at 842.494 kb on + strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.500 kb on - strand, within CSW01_18600at 842.502 kb on - strand, within CSW01_18600at 842.520 kb on - strand, within CSW01_18600at 842.551 kb on + strand, within CSW01_18600

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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840,434 - CSW01_18590 0.12 +0.6
840,437 - CSW01_18590 0.12 -0.8
840,445 + CSW01_18590 0.13 +0.2
840,474 + CSW01_18590 0.16 +0.2
840,533 - CSW01_18590 0.22 +0.4
840,547 - CSW01_18590 0.24 +1.0
840,843 + CSW01_18590 0.55 +0.2
840,862 + CSW01_18590 0.57 +0.8
840,862 + CSW01_18590 0.57 -0.2
840,915 - CSW01_18590 0.63 -1.8
840,972 + CSW01_18590 0.69 -0.3
840,980 - CSW01_18590 0.70 -0.4
840,980 - CSW01_18590 0.70 -0.0
841,004 - CSW01_18590 0.73 +2.5
841,092 - CSW01_18590 0.82 +0.5
841,227 + +0.1
841,227 + +1.2
841,289 + +0.5
841,356 - CSW01_18595 0.26 -2.1
841,398 + CSW01_18595 0.37 -0.4
841,552 - CSW01_18595 0.77 +0.2
841,552 - CSW01_18595 0.77 -0.4
841,576 + CSW01_18595 0.84 +0.3
841,660 - +0.9
841,677 + +1.3
841,715 - -0.4
841,790 - +0.2
841,816 + -0.2
841,874 + CSW01_18600 0.11 +0.2
841,874 + CSW01_18600 0.11 +0.7
841,881 + CSW01_18600 0.12 +0.0
841,923 + CSW01_18600 0.15 +0.2
841,923 + CSW01_18600 0.15 -0.5
841,923 + CSW01_18600 0.15 +0.3
841,944 - CSW01_18600 0.16 -0.9
841,965 - CSW01_18600 0.18 +0.9
842,002 + CSW01_18600 0.20 -0.2
842,194 + CSW01_18600 0.34 +0.2
842,204 + CSW01_18600 0.35 +0.5
842,212 - CSW01_18600 0.35 -1.1
842,218 + CSW01_18600 0.36 +1.1
842,218 + CSW01_18600 0.36 +0.4
842,218 + CSW01_18600 0.36 -0.1
842,226 - CSW01_18600 0.36 +0.6
842,226 - CSW01_18600 0.36 +0.5
842,226 - CSW01_18600 0.36 -0.0
842,226 - CSW01_18600 0.36 -0.7
842,248 - CSW01_18600 0.38 -0.3
842,282 + CSW01_18600 0.40 -1.4
842,401 + CSW01_18600 0.48 +0.3
842,401 + CSW01_18600 0.48 +0.6
842,422 + CSW01_18600 0.50 +0.5
842,494 + CSW01_18600 0.55 -0.8
842,494 + CSW01_18600 0.55 +0.7
842,500 - CSW01_18600 0.55 +1.0
842,500 - CSW01_18600 0.55 -0.6
842,500 - CSW01_18600 0.55 +0.5
842,500 - CSW01_18600 0.55 +0.3
842,502 - CSW01_18600 0.56 +0.4
842,520 - CSW01_18600 0.57 -0.5
842,551 + CSW01_18600 0.59 +0.1

Or see this region's nucleotide sequence