Experiment: LB_Aerobic_120MIN_ZN10B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18380 and CSW01_18385 are separated by 300 nucleotides CSW01_18385 and CSW01_18390 are separated by 159 nucleotides
CSW01_18380: CSW01_18380 - type I secretion C-terminal target domain-containing protein, at 789,215 to 799,006
_18380
CSW01_18385: CSW01_18385 - DNA-binding response regulator, at 799,307 to 800,092
_18385
CSW01_18390: CSW01_18390 - sensor histidine kinase, at 800,252 to 801,331
_18390
Position (kb) 799
800
801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 798.392 kb on - strand at 798.402 kb on - strand at 798.402 kb on - strand at 798.564 kb on - strand at 798.649 kb on + strand at 798.657 kb on - strand at 798.689 kb on + strand at 798.807 kb on + strand at 798.812 kb on + strand at 798.815 kb on - strand at 798.820 kb on - strand at 798.835 kb on + strand at 798.929 kb on + strand at 798.983 kb on - strand at 798.991 kb on + strand at 799.018 kb on - strand at 799.088 kb on - strand at 799.094 kb on - strand at 799.154 kb on + strand at 799.325 kb on + strand at 799.325 kb on + strand at 799.333 kb on - strand at 799.333 kb on - strand at 799.333 kb on - strand at 799.349 kb on + strand at 799.351 kb on + strand at 799.437 kb on - strand, within CSW01_18385 at 799.456 kb on + strand, within CSW01_18385 at 799.579 kb on - strand, within CSW01_18385 at 799.648 kb on - strand, within CSW01_18385 at 799.650 kb on - strand, within CSW01_18385 at 799.854 kb on + strand, within CSW01_18385 at 799.935 kb on + strand, within CSW01_18385 at 799.953 kb on - strand, within CSW01_18385 at 799.953 kb on - strand, within CSW01_18385 at 799.972 kb on - strand, within CSW01_18385 at 799.993 kb on - strand, within CSW01_18385 at 800.004 kb on + strand, within CSW01_18385 at 800.004 kb on + strand, within CSW01_18385 at 800.014 kb on - strand at 800.016 kb on + strand at 800.024 kb on - strand at 800.081 kb on - strand at 800.081 kb on - strand at 800.081 kb on - strand at 800.081 kb on - strand at 800.250 kb on + strand at 800.265 kb on + strand at 800.330 kb on - strand at 800.372 kb on + strand, within CSW01_18390 at 800.385 kb on + strand, within CSW01_18390 at 800.385 kb on + strand, within CSW01_18390 at 800.428 kb on - strand, within CSW01_18390 at 800.493 kb on - strand, within CSW01_18390 at 800.495 kb on + strand, within CSW01_18390 at 800.539 kb on - strand, within CSW01_18390 at 800.553 kb on - strand, within CSW01_18390 at 800.553 kb on - strand, within CSW01_18390 at 800.563 kb on - strand, within CSW01_18390 at 800.598 kb on - strand, within CSW01_18390 at 800.637 kb on + strand, within CSW01_18390 at 800.645 kb on - strand, within CSW01_18390 at 800.645 kb on - strand, within CSW01_18390 at 800.680 kb on + strand, within CSW01_18390 at 800.729 kb on - strand, within CSW01_18390 at 800.748 kb on - strand, within CSW01_18390 at 800.748 kb on - strand, within CSW01_18390 at 800.748 kb on - strand, within CSW01_18390 at 800.803 kb on - strand, within CSW01_18390 at 800.883 kb on + strand, within CSW01_18390 at 801.068 kb on + strand, within CSW01_18390 at 801.072 kb on - strand, within CSW01_18390 at 801.072 kb on - strand, within CSW01_18390
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B remove 798,392 - -0.2 798,402 - -0.7 798,402 - +0.3 798,564 - -0.8 798,649 + +1.8 798,657 - +0.1 798,689 + +0.5 798,807 + -0.4 798,812 + +0.1 798,815 - +1.0 798,820 - +1.2 798,835 + +1.3 798,929 + -0.0 798,983 - -0.5 798,991 + -1.8 799,018 - +0.8 799,088 - -0.9 799,094 - -0.6 799,154 + +0.4 799,325 + -0.2 799,325 + -1.8 799,333 - -0.5 799,333 - -0.0 799,333 - -0.9 799,349 + +0.6 799,351 + +0.0 799,437 - CSW01_18385 0.17 +0.7 799,456 + CSW01_18385 0.19 +0.6 799,579 - CSW01_18385 0.35 +0.5 799,648 - CSW01_18385 0.43 +0.1 799,650 - CSW01_18385 0.44 -0.5 799,854 + CSW01_18385 0.70 +1.0 799,935 + CSW01_18385 0.80 -0.9 799,953 - CSW01_18385 0.82 +0.3 799,953 - CSW01_18385 0.82 +0.3 799,972 - CSW01_18385 0.85 +0.1 799,993 - CSW01_18385 0.87 +1.2 800,004 + CSW01_18385 0.89 +0.6 800,004 + CSW01_18385 0.89 +0.3 800,014 - +0.2 800,016 + +0.2 800,024 - +0.0 800,081 - +0.2 800,081 - -0.2 800,081 - -1.4 800,081 - +1.1 800,250 + -0.0 800,265 + +0.5 800,330 - -0.8 800,372 + CSW01_18390 0.11 -0.3 800,385 + CSW01_18390 0.12 -0.5 800,385 + CSW01_18390 0.12 +0.2 800,428 - CSW01_18390 0.16 -0.4 800,493 - CSW01_18390 0.22 +0.1 800,495 + CSW01_18390 0.23 +0.3 800,539 - CSW01_18390 0.27 -0.6 800,553 - CSW01_18390 0.28 +0.3 800,553 - CSW01_18390 0.28 -0.1 800,563 - CSW01_18390 0.29 -1.5 800,598 - CSW01_18390 0.32 -0.5 800,637 + CSW01_18390 0.36 -0.5 800,645 - CSW01_18390 0.36 -0.8 800,645 - CSW01_18390 0.36 +0.4 800,680 + CSW01_18390 0.40 +0.2 800,729 - CSW01_18390 0.44 +1.0 800,748 - CSW01_18390 0.46 +0.3 800,748 - CSW01_18390 0.46 +0.4 800,748 - CSW01_18390 0.46 +0.1 800,803 - CSW01_18390 0.51 +0.1 800,883 + CSW01_18390 0.58 -1.8 801,068 + CSW01_18390 0.76 -0.5 801,072 - CSW01_18390 0.76 -0.1 801,072 - CSW01_18390 0.76 +0.5
Or see this region's nucleotide sequence