Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17645

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17635 and CSW01_17640 are separated by 57 nucleotidesCSW01_17640 and CSW01_17645 are separated by 29 nucleotidesCSW01_17645 and CSW01_17650 are separated by 12 nucleotides CSW01_17635: CSW01_17635 - class I poly(R)-hydroxyalkanoic acid synthase, at 624,075 to 625,850 _17635 CSW01_17640: CSW01_17640 - phasin family protein, at 625,908 to 626,255 _17640 CSW01_17645: CSW01_17645 - acetyl-CoA C-acetyltransferase, at 626,285 to 627,490 _17645 CSW01_17650: CSW01_17650 - beta-ketoacyl-ACP reductase, at 627,503 to 628,243 _17650 Position (kb) 626 627 628Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 625.356 kb on + strand, within CSW01_17635at 625.366 kb on + strand, within CSW01_17635at 625.497 kb on - strand, within CSW01_17635at 625.553 kb on - strand, within CSW01_17635at 625.746 kb on - strandat 625.765 kb on + strandat 625.773 kb on + strandat 625.773 kb on - strandat 625.783 kb on - strandat 625.825 kb on - strandat 625.905 kb on + strandat 625.905 kb on + strandat 625.924 kb on + strandat 625.924 kb on + strandat 625.924 kb on + strandat 625.924 kb on + strandat 625.932 kb on - strandat 625.960 kb on + strand, within CSW01_17640at 626.042 kb on + strand, within CSW01_17640at 626.092 kb on + strand, within CSW01_17640at 626.092 kb on + strand, within CSW01_17640at 626.092 kb on + strand, within CSW01_17640at 626.100 kb on - strand, within CSW01_17640at 626.100 kb on - strand, within CSW01_17640at 626.125 kb on + strand, within CSW01_17640at 626.142 kb on - strand, within CSW01_17640at 626.201 kb on + strand, within CSW01_17640at 626.320 kb on - strandat 626.333 kb on + strandat 626.431 kb on - strand, within CSW01_17645at 626.431 kb on - strand, within CSW01_17645at 626.431 kb on - strand, within CSW01_17645at 626.431 kb on - strand, within CSW01_17645at 626.450 kb on - strand, within CSW01_17645at 626.450 kb on - strand, within CSW01_17645at 626.496 kb on + strand, within CSW01_17645at 626.629 kb on - strand, within CSW01_17645at 626.630 kb on - strand, within CSW01_17645at 626.684 kb on - strand, within CSW01_17645at 626.798 kb on + strand, within CSW01_17645at 626.806 kb on - strand, within CSW01_17645at 626.834 kb on + strand, within CSW01_17645at 626.844 kb on - strand, within CSW01_17645at 626.981 kb on + strand, within CSW01_17645at 627.015 kb on + strand, within CSW01_17645at 627.188 kb on - strand, within CSW01_17645at 627.230 kb on - strand, within CSW01_17645at 627.230 kb on - strand, within CSW01_17645at 627.260 kb on - strand, within CSW01_17645at 627.308 kb on - strand, within CSW01_17645at 627.308 kb on - strand, within CSW01_17645at 627.308 kb on - strand, within CSW01_17645at 627.310 kb on + strand, within CSW01_17645at 627.310 kb on + strand, within CSW01_17645at 627.365 kb on - strand, within CSW01_17645at 627.365 kb on - strand, within CSW01_17645at 627.430 kb on - strandat 627.435 kb on + strandat 627.496 kb on + strandat 627.554 kb on - strandat 627.608 kb on + strand, within CSW01_17650at 627.685 kb on + strand, within CSW01_17650at 627.693 kb on - strand, within CSW01_17650at 627.693 kb on - strand, within CSW01_17650at 627.704 kb on - strand, within CSW01_17650at 627.740 kb on + strand, within CSW01_17650at 627.853 kb on - strand, within CSW01_17650at 627.887 kb on - strand, within CSW01_17650at 627.891 kb on - strand, within CSW01_17650at 627.908 kb on - strand, within CSW01_17650at 627.923 kb on - strand, within CSW01_17650at 628.066 kb on + strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.122 kb on - strand, within CSW01_17650at 628.125 kb on + strand, within CSW01_17650at 628.178 kb on - strandat 628.198 kb on + strandat 628.249 kb on + strandat 628.250 kb on - strandat 628.282 kb on - strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.292 kb on + strandat 628.298 kb on - strandat 628.298 kb on - strandat 628.310 kb on - strandat 628.315 kb on - strandat 628.325 kb on + strandat 628.330 kb on - strandat 628.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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625,356 + CSW01_17635 0.72 -0.4
625,366 + CSW01_17635 0.73 +0.2
625,497 - CSW01_17635 0.80 +0.1
625,553 - CSW01_17635 0.83 +0.1
625,746 - -0.3
625,765 + +0.0
625,773 + +0.6
625,773 - -0.1
625,783 - -0.7
625,825 - +0.3
625,905 + -0.2
625,905 + +0.3
625,924 + -0.7
625,924 + -0.1
625,924 + +1.0
625,924 + +0.8
625,932 - -2.3
625,960 + CSW01_17640 0.15 +0.8
626,042 + CSW01_17640 0.39 -1.0
626,092 + CSW01_17640 0.53 +0.6
626,092 + CSW01_17640 0.53 +1.3
626,092 + CSW01_17640 0.53 -0.4
626,100 - CSW01_17640 0.55 -0.2
626,100 - CSW01_17640 0.55 +0.3
626,125 + CSW01_17640 0.62 +0.1
626,142 - CSW01_17640 0.67 -0.2
626,201 + CSW01_17640 0.84 +0.1
626,320 - -0.4
626,333 + +0.3
626,431 - CSW01_17645 0.12 -0.3
626,431 - CSW01_17645 0.12 +0.1
626,431 - CSW01_17645 0.12 +0.3
626,431 - CSW01_17645 0.12 -0.5
626,450 - CSW01_17645 0.14 -0.1
626,450 - CSW01_17645 0.14 -0.2
626,496 + CSW01_17645 0.17 -0.6
626,629 - CSW01_17645 0.29 -0.1
626,630 - CSW01_17645 0.29 -0.2
626,684 - CSW01_17645 0.33 -0.4
626,798 + CSW01_17645 0.43 +1.6
626,806 - CSW01_17645 0.43 +2.9
626,834 + CSW01_17645 0.46 -0.9
626,844 - CSW01_17645 0.46 -0.5
626,981 + CSW01_17645 0.58 +0.3
627,015 + CSW01_17645 0.61 +0.5
627,188 - CSW01_17645 0.75 +0.3
627,230 - CSW01_17645 0.78 -3.3
627,230 - CSW01_17645 0.78 -1.5
627,260 - CSW01_17645 0.81 +0.7
627,308 - CSW01_17645 0.85 -0.5
627,308 - CSW01_17645 0.85 -0.0
627,308 - CSW01_17645 0.85 -1.7
627,310 + CSW01_17645 0.85 -0.2
627,310 + CSW01_17645 0.85 +0.7
627,365 - CSW01_17645 0.90 +0.1
627,365 - CSW01_17645 0.90 +0.2
627,430 - +2.4
627,435 + -0.1
627,496 + -2.5
627,554 - +0.5
627,608 + CSW01_17650 0.14 -1.1
627,685 + CSW01_17650 0.25 +0.3
627,693 - CSW01_17650 0.26 +0.3
627,693 - CSW01_17650 0.26 +0.2
627,704 - CSW01_17650 0.27 -0.4
627,740 + CSW01_17650 0.32 +0.6
627,853 - CSW01_17650 0.47 +0.7
627,887 - CSW01_17650 0.52 +0.1
627,891 - CSW01_17650 0.52 -0.5
627,908 - CSW01_17650 0.55 -0.3
627,923 - CSW01_17650 0.57 -0.7
628,066 + CSW01_17650 0.76 -0.4
628,074 - CSW01_17650 0.77 -0.0
628,074 - CSW01_17650 0.77 -2.9
628,122 - CSW01_17650 0.84 -0.3
628,125 + CSW01_17650 0.84 -0.4
628,178 - -0.2
628,198 + -1.0
628,249 + -0.0
628,250 - +0.2
628,282 - +0.2
628,290 + -0.0
628,290 + +0.3
628,290 + -0.7
628,292 + +0.1
628,298 - +0.6
628,298 - +1.2
628,310 - +1.0
628,315 - +0.3
628,325 + -0.9
628,330 - +0.0
628,330 - +0.3

Or see this region's nucleotide sequence