Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16370

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16365 and CSW01_16370 are separated by 152 nucleotidesCSW01_16370 and CSW01_16375 are separated by 119 nucleotides CSW01_16365: CSW01_16365 - LD-carboxypeptidase, at 393,426 to 394,430 _16365 CSW01_16370: CSW01_16370 - hypothetical protein, at 394,583 to 395,029 _16370 CSW01_16375: CSW01_16375 - hypothetical protein, at 395,149 to 396,078 _16375 Position (kb) 394 395 396Strain fitness (log2 ratio) -1 0 1 2at 394.533 kb on + strandat 394.694 kb on + strand, within CSW01_16370at 394.694 kb on + strand, within CSW01_16370at 394.694 kb on + strand, within CSW01_16370at 394.694 kb on + strand, within CSW01_16370at 394.694 kb on + strand, within CSW01_16370at 394.702 kb on - strand, within CSW01_16370at 394.702 kb on - strand, within CSW01_16370at 394.702 kb on - strand, within CSW01_16370at 394.702 kb on - strand, within CSW01_16370at 394.704 kb on + strand, within CSW01_16370at 394.704 kb on + strand, within CSW01_16370at 394.704 kb on + strand, within CSW01_16370at 394.710 kb on - strand, within CSW01_16370at 394.712 kb on - strand, within CSW01_16370at 394.773 kb on + strand, within CSW01_16370at 394.800 kb on - strand, within CSW01_16370at 394.843 kb on - strand, within CSW01_16370at 394.852 kb on + strand, within CSW01_16370at 394.877 kb on + strand, within CSW01_16370at 394.930 kb on + strand, within CSW01_16370at 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.005 kb on + strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.013 kb on - strandat 395.026 kb on - strandat 395.042 kb on - strandat 395.044 kb on - strandat 395.044 kb on - strandat 395.044 kb on - strandat 395.044 kb on - strandat 395.086 kb on + strandat 395.088 kb on + strandat 395.088 kb on + strandat 395.125 kb on - strandat 395.142 kb on - strandat 395.143 kb on + strandat 395.143 kb on + strandat 395.158 kb on + strandat 395.170 kb on - strandat 395.222 kb on - strandat 395.235 kb on - strandat 395.240 kb on - strandat 395.315 kb on - strand, within CSW01_16375at 395.315 kb on - strand, within CSW01_16375at 395.325 kb on - strand, within CSW01_16375at 395.346 kb on - strand, within CSW01_16375at 395.347 kb on + strand, within CSW01_16375at 395.501 kb on - strand, within CSW01_16375at 395.501 kb on - strand, within CSW01_16375at 395.501 kb on - strand, within CSW01_16375at 395.519 kb on + strand, within CSW01_16375at 395.527 kb on - strand, within CSW01_16375at 395.527 kb on - strand, within CSW01_16375at 395.529 kb on + strand, within CSW01_16375at 395.529 kb on + strand, within CSW01_16375at 395.534 kb on + strand, within CSW01_16375at 395.534 kb on + strand, within CSW01_16375at 395.534 kb on + strand, within CSW01_16375at 395.537 kb on - strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.539 kb on + strand, within CSW01_16375at 395.604 kb on + strand, within CSW01_16375at 395.637 kb on - strand, within CSW01_16375at 395.652 kb on + strand, within CSW01_16375at 395.652 kb on + strand, within CSW01_16375at 395.654 kb on + strand, within CSW01_16375at 395.685 kb on + strand, within CSW01_16375at 395.758 kb on - strand, within CSW01_16375at 395.760 kb on + strand, within CSW01_16375at 395.760 kb on - strand, within CSW01_16375at 395.897 kb on - strand, within CSW01_16375at 395.922 kb on + strand, within CSW01_16375at 395.930 kb on - strand, within CSW01_16375at 395.930 kb on - strand, within CSW01_16375

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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394,533 + -0.1
394,694 + CSW01_16370 0.25 -1.2
394,694 + CSW01_16370 0.25 -0.4
394,694 + CSW01_16370 0.25 -0.6
394,694 + CSW01_16370 0.25 -0.3
394,694 + CSW01_16370 0.25 -0.7
394,702 - CSW01_16370 0.27 -0.8
394,702 - CSW01_16370 0.27 +0.6
394,702 - CSW01_16370 0.27 -0.7
394,702 - CSW01_16370 0.27 +0.8
394,704 + CSW01_16370 0.27 -0.2
394,704 + CSW01_16370 0.27 -0.5
394,704 + CSW01_16370 0.27 -0.2
394,710 - CSW01_16370 0.28 -0.3
394,712 - CSW01_16370 0.29 +0.4
394,773 + CSW01_16370 0.43 +0.0
394,800 - CSW01_16370 0.49 -0.7
394,843 - CSW01_16370 0.58 +0.1
394,852 + CSW01_16370 0.60 +0.3
394,877 + CSW01_16370 0.66 +0.3
394,930 + CSW01_16370 0.78 -0.4
395,005 + +0.5
395,005 + -0.3
395,005 + +0.5
395,005 + -0.5
395,005 + -1.0
395,005 + -0.3
395,005 + +1.0
395,005 + -0.3
395,005 + +0.8
395,005 + -0.5
395,005 + +0.5
395,005 + +0.1
395,005 + +0.7
395,005 + +2.6
395,013 - +0.5
395,013 - -0.1
395,013 - +0.6
395,013 - +0.2
395,013 - -0.1
395,013 - -0.0
395,013 - -0.6
395,013 - +0.0
395,013 - -1.3
395,013 - -0.1
395,013 - -0.0
395,013 - -0.6
395,026 - -0.4
395,042 - -0.3
395,044 - +1.0
395,044 - +0.1
395,044 - -0.5
395,044 - -0.0
395,086 + -0.3
395,088 + +1.6
395,088 + -0.4
395,125 - +0.0
395,142 - +1.3
395,143 + +0.3
395,143 + -0.3
395,158 + -0.6
395,170 - -1.0
395,222 - +0.2
395,235 - -0.6
395,240 - -0.5
395,315 - CSW01_16375 0.18 -0.1
395,315 - CSW01_16375 0.18 +0.5
395,325 - CSW01_16375 0.19 -0.3
395,346 - CSW01_16375 0.21 +0.2
395,347 + CSW01_16375 0.21 -0.2
395,501 - CSW01_16375 0.38 +1.0
395,501 - CSW01_16375 0.38 -0.1
395,501 - CSW01_16375 0.38 +0.0
395,519 + CSW01_16375 0.40 -0.5
395,527 - CSW01_16375 0.41 +1.2
395,527 - CSW01_16375 0.41 +0.6
395,529 + CSW01_16375 0.41 -1.2
395,529 + CSW01_16375 0.41 -0.0
395,534 + CSW01_16375 0.41 -0.2
395,534 + CSW01_16375 0.41 +0.1
395,534 + CSW01_16375 0.41 +0.8
395,537 - CSW01_16375 0.42 +0.5
395,539 + CSW01_16375 0.42 -0.6
395,539 + CSW01_16375 0.42 +1.0
395,539 + CSW01_16375 0.42 +0.4
395,539 + CSW01_16375 0.42 -1.0
395,604 + CSW01_16375 0.49 -0.6
395,637 - CSW01_16375 0.52 -0.7
395,652 + CSW01_16375 0.54 -0.8
395,652 + CSW01_16375 0.54 -0.2
395,654 + CSW01_16375 0.54 -0.1
395,685 + CSW01_16375 0.58 -0.0
395,758 - CSW01_16375 0.65 +0.7
395,760 + CSW01_16375 0.66 +0.9
395,760 - CSW01_16375 0.66 -0.3
395,897 - CSW01_16375 0.80 +0.6
395,922 + CSW01_16375 0.83 -0.6
395,930 - CSW01_16375 0.84 +0.1
395,930 - CSW01_16375 0.84 -0.1

Or see this region's nucleotide sequence