Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14550

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14545 and CSW01_14550 are separated by 431 nucleotidesCSW01_14550 and CSW01_14555 are separated by 40 nucleotides CSW01_14545: CSW01_14545 - sel1 repeat family protein, at 115,408 to 116,412 _14545 CSW01_14550: CSW01_14550 - type VI secretion system contractile sheath small subunit, at 116,844 to 117,350 _14550 CSW01_14555: CSW01_14555 - type VI secretion system contractile sheath large subunit, at 117,391 to 118,869 _14555 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 115.846 kb on + strand, within CSW01_14545at 115.868 kb on + strand, within CSW01_14545at 115.868 kb on + strand, within CSW01_14545at 115.869 kb on + strand, within CSW01_14545at 115.869 kb on + strand, within CSW01_14545at 115.871 kb on - strand, within CSW01_14545at 115.871 kb on - strand, within CSW01_14545at 115.876 kb on - strand, within CSW01_14545at 115.877 kb on - strand, within CSW01_14545at 115.877 kb on - strand, within CSW01_14545at 115.907 kb on + strand, within CSW01_14545at 115.925 kb on + strand, within CSW01_14545at 115.932 kb on - strand, within CSW01_14545at 115.975 kb on - strand, within CSW01_14545at 115.978 kb on + strand, within CSW01_14545at 116.013 kb on + strand, within CSW01_14545at 116.040 kb on - strand, within CSW01_14545at 116.042 kb on - strand, within CSW01_14545at 116.114 kb on + strand, within CSW01_14545at 116.114 kb on + strand, within CSW01_14545at 116.114 kb on + strand, within CSW01_14545at 116.116 kb on + strand, within CSW01_14545at 116.119 kb on + strand, within CSW01_14545at 116.122 kb on - strand, within CSW01_14545at 116.122 kb on - strand, within CSW01_14545at 116.203 kb on + strand, within CSW01_14545at 116.203 kb on + strand, within CSW01_14545at 116.212 kb on - strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.228 kb on - strand, within CSW01_14545at 116.255 kb on - strand, within CSW01_14545at 116.263 kb on - strand, within CSW01_14545at 116.356 kb on - strandat 116.415 kb on - strandat 116.676 kb on - strandat 116.764 kb on + strandat 116.834 kb on - strandat 116.860 kb on + strandat 116.890 kb on + strandat 116.918 kb on + strand, within CSW01_14550at 116.918 kb on + strand, within CSW01_14550at 116.918 kb on + strand, within CSW01_14550at 116.926 kb on - strand, within CSW01_14550at 116.926 kb on - strand, within CSW01_14550at 116.944 kb on + strand, within CSW01_14550at 116.986 kb on + strand, within CSW01_14550at 116.994 kb on - strand, within CSW01_14550at 116.996 kb on + strand, within CSW01_14550at 117.020 kb on + strand, within CSW01_14550at 117.039 kb on + strand, within CSW01_14550at 117.172 kb on + strand, within CSW01_14550at 117.277 kb on + strand, within CSW01_14550at 117.277 kb on + strand, within CSW01_14550at 117.285 kb on - strand, within CSW01_14550at 117.285 kb on - strand, within CSW01_14550at 117.285 kb on - strand, within CSW01_14550at 117.285 kb on - strand, within CSW01_14550at 117.288 kb on - strand, within CSW01_14550at 117.336 kb on - strandat 117.423 kb on + strandat 117.430 kb on - strandat 117.441 kb on - strandat 117.478 kb on - strandat 117.487 kb on - strandat 117.493 kb on + strandat 117.500 kb on - strandat 117.501 kb on - strandat 117.501 kb on - strandat 117.501 kb on - strandat 117.553 kb on - strand, within CSW01_14555at 117.554 kb on + strand, within CSW01_14555at 117.557 kb on + strand, within CSW01_14555at 117.565 kb on - strand, within CSW01_14555at 117.565 kb on - strand, within CSW01_14555at 117.683 kb on + strand, within CSW01_14555at 117.691 kb on - strand, within CSW01_14555at 117.806 kb on - strand, within CSW01_14555at 117.981 kb on - strand, within CSW01_14555at 118.022 kb on - strand, within CSW01_14555at 118.182 kb on + strand, within CSW01_14555at 118.220 kb on - strand, within CSW01_14555at 118.220 kb on - strand, within CSW01_14555at 118.222 kb on + strand, within CSW01_14555at 118.222 kb on + strand, within CSW01_14555at 118.230 kb on - strand, within CSW01_14555at 118.230 kb on - strand, within CSW01_14555at 118.246 kb on + strand, within CSW01_14555at 118.324 kb on + strand, within CSW01_14555

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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115,846 + CSW01_14545 0.44 -0.6
115,868 + CSW01_14545 0.46 +0.1
115,868 + CSW01_14545 0.46 -0.2
115,869 + CSW01_14545 0.46 +1.1
115,869 + CSW01_14545 0.46 -2.0
115,871 - CSW01_14545 0.46 -2.1
115,871 - CSW01_14545 0.46 -0.4
115,876 - CSW01_14545 0.47 +0.3
115,877 - CSW01_14545 0.47 +0.3
115,877 - CSW01_14545 0.47 +1.2
115,907 + CSW01_14545 0.50 -0.0
115,925 + CSW01_14545 0.51 -0.3
115,932 - CSW01_14545 0.52 -0.8
115,975 - CSW01_14545 0.56 -0.7
115,978 + CSW01_14545 0.57 +0.5
116,013 + CSW01_14545 0.60 +0.3
116,040 - CSW01_14545 0.63 -0.9
116,042 - CSW01_14545 0.63 -0.4
116,114 + CSW01_14545 0.70 +0.2
116,114 + CSW01_14545 0.70 +0.1
116,114 + CSW01_14545 0.70 -0.2
116,116 + CSW01_14545 0.70 -1.9
116,119 + CSW01_14545 0.71 +0.0
116,122 - CSW01_14545 0.71 -0.2
116,122 - CSW01_14545 0.71 -0.2
116,203 + CSW01_14545 0.79 -0.6
116,203 + CSW01_14545 0.79 -0.3
116,212 - CSW01_14545 0.80 +0.3
116,214 + CSW01_14545 0.80 +0.1
116,214 + CSW01_14545 0.80 -0.1
116,214 + CSW01_14545 0.80 +0.7
116,214 + CSW01_14545 0.80 -0.1
116,214 + CSW01_14545 0.80 +0.2
116,214 + CSW01_14545 0.80 -1.4
116,214 + CSW01_14545 0.80 -0.3
116,214 + CSW01_14545 0.80 -1.1
116,214 + CSW01_14545 0.80 -0.5
116,214 + CSW01_14545 0.80 +0.0
116,214 + CSW01_14545 0.80 -1.7
116,214 + CSW01_14545 0.80 +1.2
116,214 + CSW01_14545 0.80 +0.4
116,214 + CSW01_14545 0.80 +0.0
116,214 + CSW01_14545 0.80 +0.4
116,214 + CSW01_14545 0.80 +0.3
116,214 + CSW01_14545 0.80 -0.1
116,214 + CSW01_14545 0.80 +2.1
116,214 + CSW01_14545 0.80 +0.4
116,214 + CSW01_14545 0.80 -0.0
116,222 - CSW01_14545 0.81 +0.6
116,222 - CSW01_14545 0.81 +0.0
116,222 - CSW01_14545 0.81 +0.3
116,222 - CSW01_14545 0.81 +1.0
116,222 - CSW01_14545 0.81 +0.2
116,222 - CSW01_14545 0.81 -0.7
116,222 - CSW01_14545 0.81 +0.1
116,222 - CSW01_14545 0.81 -0.1
116,222 - CSW01_14545 0.81 -0.6
116,222 - CSW01_14545 0.81 +0.2
116,222 - CSW01_14545 0.81 -0.0
116,222 - CSW01_14545 0.81 -0.9
116,222 - CSW01_14545 0.81 -1.2
116,222 - CSW01_14545 0.81 +0.0
116,222 - CSW01_14545 0.81 +0.2
116,222 - CSW01_14545 0.81 -0.4
116,222 - CSW01_14545 0.81 -0.5
116,228 - CSW01_14545 0.82 +0.0
116,255 - CSW01_14545 0.84 +0.6
116,263 - CSW01_14545 0.85 -1.0
116,356 - +0.2
116,415 - +1.8
116,676 - -0.1
116,764 + -0.2
116,834 - -0.6
116,860 + -0.2
116,890 + +0.2
116,918 + CSW01_14550 0.15 -1.5
116,918 + CSW01_14550 0.15 +0.8
116,918 + CSW01_14550 0.15 -0.9
116,926 - CSW01_14550 0.16 -1.2
116,926 - CSW01_14550 0.16 -0.5
116,944 + CSW01_14550 0.20 +0.0
116,986 + CSW01_14550 0.28 +0.3
116,994 - CSW01_14550 0.30 -0.9
116,996 + CSW01_14550 0.30 +0.0
117,020 + CSW01_14550 0.35 -1.1
117,039 + CSW01_14550 0.38 -0.2
117,172 + CSW01_14550 0.65 -0.2
117,277 + CSW01_14550 0.85 -0.5
117,277 + CSW01_14550 0.85 -0.0
117,285 - CSW01_14550 0.87 -0.8
117,285 - CSW01_14550 0.87 -0.2
117,285 - CSW01_14550 0.87 +0.3
117,285 - CSW01_14550 0.87 -0.2
117,288 - CSW01_14550 0.88 -0.9
117,336 - +1.3
117,423 + -0.1
117,430 - -0.5
117,441 - -0.5
117,478 - +0.6
117,487 - +0.1
117,493 + -0.9
117,500 - -0.9
117,501 - +0.2
117,501 - -0.1
117,501 - +0.0
117,553 - CSW01_14555 0.11 +0.4
117,554 + CSW01_14555 0.11 -0.1
117,557 + CSW01_14555 0.11 -0.6
117,565 - CSW01_14555 0.12 -1.8
117,565 - CSW01_14555 0.12 +0.5
117,683 + CSW01_14555 0.20 +0.7
117,691 - CSW01_14555 0.20 -0.3
117,806 - CSW01_14555 0.28 -0.5
117,981 - CSW01_14555 0.40 -1.0
118,022 - CSW01_14555 0.43 +0.5
118,182 + CSW01_14555 0.53 -0.7
118,220 - CSW01_14555 0.56 +0.4
118,220 - CSW01_14555 0.56 -0.5
118,222 + CSW01_14555 0.56 +0.1
118,222 + CSW01_14555 0.56 -0.3
118,230 - CSW01_14555 0.57 +0.0
118,230 - CSW01_14555 0.57 -0.0
118,246 + CSW01_14555 0.58 +0.3
118,324 + CSW01_14555 0.63 +0.6

Or see this region's nucleotide sequence