Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07990

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07985 and CSW01_07990 are separated by 82 nucleotidesCSW01_07990 and CSW01_07995 are separated by 17 nucleotides CSW01_07985: CSW01_07985 - EAL domain-containing protein, at 1,702,436 to 1,703,290 _07985 CSW01_07990: CSW01_07990 - GGDEF domain-containing protein, at 1,703,373 to 1,704,662 _07990 CSW01_07995: CSW01_07995 - galactose-1-epimerase, at 1,704,680 to 1,705,711 _07995 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -1 0 1 2 3at 1702.504 kb on + strandat 1702.512 kb on - strandat 1702.568 kb on - strand, within CSW01_07985at 1702.621 kb on + strand, within CSW01_07985at 1702.691 kb on - strand, within CSW01_07985at 1702.791 kb on - strand, within CSW01_07985at 1702.827 kb on + strand, within CSW01_07985at 1702.835 kb on - strand, within CSW01_07985at 1702.878 kb on + strand, within CSW01_07985at 1702.912 kb on - strand, within CSW01_07985at 1702.985 kb on - strand, within CSW01_07985at 1703.110 kb on + strand, within CSW01_07985at 1703.125 kb on - strand, within CSW01_07985at 1703.137 kb on - strand, within CSW01_07985at 1703.207 kb on + strandat 1703.215 kb on - strandat 1703.215 kb on - strandat 1703.250 kb on + strandat 1703.290 kb on - strandat 1703.349 kb on + strandat 1703.458 kb on - strandat 1703.525 kb on - strand, within CSW01_07990at 1703.563 kb on + strand, within CSW01_07990at 1703.605 kb on + strand, within CSW01_07990at 1703.605 kb on + strand, within CSW01_07990at 1703.676 kb on - strand, within CSW01_07990at 1703.804 kb on + strand, within CSW01_07990at 1703.804 kb on + strand, within CSW01_07990at 1703.868 kb on + strand, within CSW01_07990at 1703.902 kb on - strand, within CSW01_07990at 1703.916 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.918 kb on + strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.926 kb on - strand, within CSW01_07990at 1703.982 kb on + strand, within CSW01_07990at 1703.991 kb on + strand, within CSW01_07990at 1704.013 kb on + strand, within CSW01_07990at 1704.087 kb on - strand, within CSW01_07990at 1704.087 kb on - strand, within CSW01_07990at 1704.102 kb on - strand, within CSW01_07990at 1704.102 kb on - strand, within CSW01_07990at 1704.102 kb on - strand, within CSW01_07990at 1704.102 kb on - strand, within CSW01_07990at 1704.102 kb on - strand, within CSW01_07990at 1704.242 kb on + strand, within CSW01_07990at 1704.250 kb on - strand, within CSW01_07990at 1704.340 kb on + strand, within CSW01_07990at 1704.480 kb on + strand, within CSW01_07990at 1704.567 kb on + strandat 1704.614 kb on - strandat 1704.624 kb on + strandat 1704.659 kb on - strandat 1704.710 kb on + strandat 1704.797 kb on + strand, within CSW01_07995at 1704.807 kb on + strand, within CSW01_07995at 1704.807 kb on + strand, within CSW01_07995at 1704.815 kb on - strand, within CSW01_07995at 1704.815 kb on - strand, within CSW01_07995at 1704.872 kb on - strand, within CSW01_07995at 1704.882 kb on + strand, within CSW01_07995at 1704.899 kb on - strand, within CSW01_07995at 1704.924 kb on + strand, within CSW01_07995at 1704.932 kb on - strand, within CSW01_07995at 1705.017 kb on - strand, within CSW01_07995at 1705.038 kb on - strand, within CSW01_07995at 1705.067 kb on + strand, within CSW01_07995at 1705.126 kb on + strand, within CSW01_07995at 1705.137 kb on + strand, within CSW01_07995at 1705.145 kb on - strand, within CSW01_07995at 1705.166 kb on + strand, within CSW01_07995at 1705.169 kb on - strand, within CSW01_07995at 1705.171 kb on + strand, within CSW01_07995at 1705.174 kb on - strand, within CSW01_07995at 1705.275 kb on + strand, within CSW01_07995at 1705.293 kb on + strand, within CSW01_07995at 1705.293 kb on + strand, within CSW01_07995at 1705.313 kb on + strand, within CSW01_07995at 1705.321 kb on - strand, within CSW01_07995at 1705.321 kb on - strand, within CSW01_07995at 1705.321 kb on - strand, within CSW01_07995at 1705.390 kb on + strand, within CSW01_07995at 1705.412 kb on + strand, within CSW01_07995at 1705.418 kb on + strand, within CSW01_07995at 1705.446 kb on + strand, within CSW01_07995at 1705.454 kb on - strand, within CSW01_07995at 1705.551 kb on - strand, within CSW01_07995at 1705.581 kb on - strand, within CSW01_07995at 1705.597 kb on - strand, within CSW01_07995at 1705.615 kb on - strandat 1705.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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1,702,504 + +0.7
1,702,512 - +0.3
1,702,568 - CSW01_07985 0.15 +0.5
1,702,621 + CSW01_07985 0.22 -0.4
1,702,691 - CSW01_07985 0.30 -1.7
1,702,791 - CSW01_07985 0.42 -0.7
1,702,827 + CSW01_07985 0.46 -1.5
1,702,835 - CSW01_07985 0.47 +2.6
1,702,878 + CSW01_07985 0.52 -0.6
1,702,912 - CSW01_07985 0.56 +0.7
1,702,985 - CSW01_07985 0.64 +0.6
1,703,110 + CSW01_07985 0.79 -1.0
1,703,125 - CSW01_07985 0.81 -0.6
1,703,137 - CSW01_07985 0.82 +0.3
1,703,207 + -0.6
1,703,215 - -1.0
1,703,215 - -0.4
1,703,250 + -0.4
1,703,290 - -0.3
1,703,349 + +1.2
1,703,458 - +0.1
1,703,525 - CSW01_07990 0.12 +0.6
1,703,563 + CSW01_07990 0.15 -0.6
1,703,605 + CSW01_07990 0.18 -0.6
1,703,605 + CSW01_07990 0.18 -0.0
1,703,676 - CSW01_07990 0.23 +0.4
1,703,804 + CSW01_07990 0.33 -0.7
1,703,804 + CSW01_07990 0.33 +0.7
1,703,868 + CSW01_07990 0.38 +0.1
1,703,902 - CSW01_07990 0.41 +0.3
1,703,916 + CSW01_07990 0.42 -0.6
1,703,918 + CSW01_07990 0.42 -0.3
1,703,918 + CSW01_07990 0.42 +3.0
1,703,918 + CSW01_07990 0.42 +0.4
1,703,918 + CSW01_07990 0.42 -0.2
1,703,918 + CSW01_07990 0.42 -0.8
1,703,918 + CSW01_07990 0.42 +0.9
1,703,918 + CSW01_07990 0.42 -0.4
1,703,918 + CSW01_07990 0.42 +0.0
1,703,918 + CSW01_07990 0.42 -0.2
1,703,918 + CSW01_07990 0.42 +0.1
1,703,926 - CSW01_07990 0.43 +0.4
1,703,926 - CSW01_07990 0.43 +0.2
1,703,926 - CSW01_07990 0.43 -0.6
1,703,926 - CSW01_07990 0.43 +0.2
1,703,926 - CSW01_07990 0.43 +2.0
1,703,926 - CSW01_07990 0.43 -1.7
1,703,926 - CSW01_07990 0.43 -0.4
1,703,926 - CSW01_07990 0.43 +0.3
1,703,926 - CSW01_07990 0.43 -1.1
1,703,926 - CSW01_07990 0.43 -0.6
1,703,982 + CSW01_07990 0.47 +0.6
1,703,991 + CSW01_07990 0.48 +0.7
1,704,013 + CSW01_07990 0.50 +1.1
1,704,087 - CSW01_07990 0.55 -0.5
1,704,087 - CSW01_07990 0.55 -1.3
1,704,102 - CSW01_07990 0.57 -0.0
1,704,102 - CSW01_07990 0.57 +0.4
1,704,102 - CSW01_07990 0.57 -0.3
1,704,102 - CSW01_07990 0.57 -0.0
1,704,102 - CSW01_07990 0.57 -0.7
1,704,242 + CSW01_07990 0.67 -0.1
1,704,250 - CSW01_07990 0.68 +0.3
1,704,340 + CSW01_07990 0.75 -1.6
1,704,480 + CSW01_07990 0.86 +0.0
1,704,567 + +0.2
1,704,614 - -0.1
1,704,624 + -1.1
1,704,659 - -0.9
1,704,710 + -0.2
1,704,797 + CSW01_07995 0.11 -1.5
1,704,807 + CSW01_07995 0.12 -0.4
1,704,807 + CSW01_07995 0.12 +0.0
1,704,815 - CSW01_07995 0.13 +1.2
1,704,815 - CSW01_07995 0.13 +0.7
1,704,872 - CSW01_07995 0.19 +0.3
1,704,882 + CSW01_07995 0.20 -1.1
1,704,899 - CSW01_07995 0.21 +0.5
1,704,924 + CSW01_07995 0.24 -1.6
1,704,932 - CSW01_07995 0.24 -1.4
1,705,017 - CSW01_07995 0.33 +1.7
1,705,038 - CSW01_07995 0.35 -1.6
1,705,067 + CSW01_07995 0.38 +0.6
1,705,126 + CSW01_07995 0.43 -0.2
1,705,137 + CSW01_07995 0.44 -1.4
1,705,145 - CSW01_07995 0.45 +1.3
1,705,166 + CSW01_07995 0.47 -0.1
1,705,169 - CSW01_07995 0.47 -0.8
1,705,171 + CSW01_07995 0.48 +0.8
1,705,174 - CSW01_07995 0.48 +0.0
1,705,275 + CSW01_07995 0.58 +0.1
1,705,293 + CSW01_07995 0.59 -0.1
1,705,293 + CSW01_07995 0.59 +0.4
1,705,313 + CSW01_07995 0.61 +0.1
1,705,321 - CSW01_07995 0.62 +1.4
1,705,321 - CSW01_07995 0.62 +0.2
1,705,321 - CSW01_07995 0.62 -0.6
1,705,390 + CSW01_07995 0.69 +0.1
1,705,412 + CSW01_07995 0.71 +0.1
1,705,418 + CSW01_07995 0.72 +1.0
1,705,446 + CSW01_07995 0.74 +0.2
1,705,454 - CSW01_07995 0.75 +0.8
1,705,551 - CSW01_07995 0.84 -0.0
1,705,581 - CSW01_07995 0.87 -0.6
1,705,597 - CSW01_07995 0.89 -1.4
1,705,615 - +0.4
1,705,647 + +0.7

Or see this region's nucleotide sequence