Experiment: LB_Aerobic_120MIN_ZN10B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_05490 and CSW01_05495 are separated by 245 nucleotides CSW01_05495 and CSW01_05500 overlap by 4 nucleotides
CSW01_05490: CSW01_05490 - L-threonylcarbamoyladenylate synthase, at 1,145,001 to 1,145,990
_05490
CSW01_05495: CSW01_05495 - histidine kinase, at 1,146,236 to 1,146,601
_05495
CSW01_05500: CSW01_05500 - response regulator, at 1,146,598 to 1,147,740
_05500
Position (kb)
1146
1147 Strain fitness (log2 ratio)
-1
0
1
2 at 1145.346 kb on + strand, within CSW01_05490 at 1145.376 kb on + strand, within CSW01_05490 at 1145.468 kb on - strand, within CSW01_05490 at 1145.468 kb on - strand, within CSW01_05490 at 1145.556 kb on - strand, within CSW01_05490 at 1145.647 kb on + strand, within CSW01_05490 at 1145.670 kb on - strand, within CSW01_05490 at 1145.670 kb on - strand, within CSW01_05490 at 1145.759 kb on - strand, within CSW01_05490 at 1145.867 kb on - strand, within CSW01_05490 at 1146.000 kb on + strand at 1146.042 kb on - strand at 1146.104 kb on - strand at 1146.179 kb on + strand at 1146.192 kb on + strand at 1146.247 kb on - strand at 1146.271 kb on + strand at 1146.300 kb on + strand, within CSW01_05495 at 1146.303 kb on - strand, within CSW01_05495 at 1146.305 kb on + strand, within CSW01_05495 at 1146.315 kb on + strand, within CSW01_05495 at 1146.323 kb on - strand, within CSW01_05495 at 1146.325 kb on - strand, within CSW01_05495 at 1146.401 kb on - strand, within CSW01_05495 at 1146.415 kb on - strand, within CSW01_05495 at 1146.549 kb on + strand, within CSW01_05495 at 1146.557 kb on - strand, within CSW01_05495 at 1146.570 kb on + strand at 1146.570 kb on + strand at 1146.570 kb on + strand at 1146.570 kb on + strand at 1146.578 kb on - strand at 1146.688 kb on + strand at 1146.720 kb on + strand, within CSW01_05500 at 1146.824 kb on + strand, within CSW01_05500 at 1146.854 kb on - strand, within CSW01_05500 at 1146.883 kb on + strand, within CSW01_05500 at 1146.891 kb on - strand, within CSW01_05500 at 1146.909 kb on + strand, within CSW01_05500 at 1146.909 kb on + strand, within CSW01_05500 at 1146.978 kb on + strand, within CSW01_05500 at 1146.991 kb on - strand, within CSW01_05500 at 1147.032 kb on + strand, within CSW01_05500 at 1147.032 kb on + strand, within CSW01_05500 at 1147.032 kb on + strand, within CSW01_05500 at 1147.040 kb on - strand, within CSW01_05500 at 1147.108 kb on + strand, within CSW01_05500 at 1147.261 kb on - strand, within CSW01_05500 at 1147.269 kb on + strand, within CSW01_05500 at 1147.312 kb on + strand, within CSW01_05500 at 1147.356 kb on - strand, within CSW01_05500 at 1147.433 kb on - strand, within CSW01_05500 at 1147.470 kb on + strand, within CSW01_05500 at 1147.576 kb on - strand, within CSW01_05500
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B remove 1,145,346 + CSW01_05490 0.35 +0.2 1,145,376 + CSW01_05490 0.38 -0.7 1,145,468 - CSW01_05490 0.47 +0.1 1,145,468 - CSW01_05490 0.47 -1.3 1,145,556 - CSW01_05490 0.56 -1.5 1,145,647 + CSW01_05490 0.65 +2.1 1,145,670 - CSW01_05490 0.68 +0.0 1,145,670 - CSW01_05490 0.68 -1.6 1,145,759 - CSW01_05490 0.77 -0.5 1,145,867 - CSW01_05490 0.87 +1.0 1,146,000 + -0.8 1,146,042 - +0.1 1,146,104 - -0.6 1,146,179 + +0.2 1,146,192 + -0.1 1,146,247 - -0.7 1,146,271 + -0.3 1,146,300 + CSW01_05495 0.17 -0.3 1,146,303 - CSW01_05495 0.18 -0.1 1,146,305 + CSW01_05495 0.19 +1.6 1,146,315 + CSW01_05495 0.22 +0.2 1,146,323 - CSW01_05495 0.24 -0.3 1,146,325 - CSW01_05495 0.24 +0.8 1,146,401 - CSW01_05495 0.45 +0.3 1,146,415 - CSW01_05495 0.49 +0.6 1,146,549 + CSW01_05495 0.86 +0.1 1,146,557 - CSW01_05495 0.88 +0.1 1,146,570 + -0.1 1,146,570 + +1.0 1,146,570 + -0.1 1,146,570 + -0.3 1,146,578 - +0.3 1,146,688 + +0.4 1,146,720 + CSW01_05500 0.11 +1.3 1,146,824 + CSW01_05500 0.20 -0.2 1,146,854 - CSW01_05500 0.22 -0.0 1,146,883 + CSW01_05500 0.25 -1.3 1,146,891 - CSW01_05500 0.26 +0.8 1,146,909 + CSW01_05500 0.27 +0.2 1,146,909 + CSW01_05500 0.27 -0.3 1,146,978 + CSW01_05500 0.33 +0.7 1,146,991 - CSW01_05500 0.34 -0.4 1,147,032 + CSW01_05500 0.38 -1.2 1,147,032 + CSW01_05500 0.38 +1.3 1,147,032 + CSW01_05500 0.38 -0.4 1,147,040 - CSW01_05500 0.39 +0.5 1,147,108 + CSW01_05500 0.45 -0.1 1,147,261 - CSW01_05500 0.58 -0.3 1,147,269 + CSW01_05500 0.59 +1.0 1,147,312 + CSW01_05500 0.62 -0.2 1,147,356 - CSW01_05500 0.66 +0.0 1,147,433 - CSW01_05500 0.73 +0.3 1,147,470 + CSW01_05500 0.76 +0.2 1,147,576 - CSW01_05500 0.86 +0.2
Or see this region's nucleotide sequence