Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05450

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05445 and CSW01_05450 are separated by 13 nucleotidesCSW01_05450 and CSW01_05455 are separated by 38 nucleotides CSW01_05445: CSW01_05445 - aldehyde dehydrogenase, at 1,135,037 to 1,136,038 _05445 CSW01_05450: CSW01_05450 - phosphatase, at 1,136,052 to 1,136,549 _05450 CSW01_05455: CSW01_05455 - MFS transporter, at 1,136,588 to 1,137,823 _05455 Position (kb) 1136 1137Strain fitness (log2 ratio) -2 -1 0 1at 1135.086 kb on - strandat 1135.129 kb on + strandat 1135.129 kb on + strandat 1135.129 kb on + strandat 1135.129 kb on + strandat 1135.187 kb on + strand, within CSW01_05445at 1135.216 kb on - strand, within CSW01_05445at 1135.221 kb on - strand, within CSW01_05445at 1135.235 kb on - strand, within CSW01_05445at 1135.294 kb on - strand, within CSW01_05445at 1135.312 kb on + strand, within CSW01_05445at 1135.414 kb on - strand, within CSW01_05445at 1135.450 kb on + strand, within CSW01_05445at 1135.616 kb on + strand, within CSW01_05445at 1135.624 kb on - strand, within CSW01_05445at 1135.624 kb on - strand, within CSW01_05445at 1135.624 kb on - strand, within CSW01_05445at 1135.624 kb on - strand, within CSW01_05445at 1135.649 kb on - strand, within CSW01_05445at 1135.734 kb on - strand, within CSW01_05445at 1135.791 kb on - strand, within CSW01_05445at 1135.791 kb on - strand, within CSW01_05445at 1135.857 kb on + strand, within CSW01_05445at 1135.857 kb on + strand, within CSW01_05445at 1135.940 kb on - strandat 1135.968 kb on - strandat 1135.987 kb on + strandat 1136.004 kb on + strandat 1136.149 kb on + strand, within CSW01_05450at 1136.154 kb on + strand, within CSW01_05450at 1136.157 kb on - strand, within CSW01_05450at 1136.193 kb on + strand, within CSW01_05450at 1136.201 kb on - strand, within CSW01_05450at 1136.201 kb on - strand, within CSW01_05450at 1136.282 kb on + strand, within CSW01_05450at 1136.335 kb on + strand, within CSW01_05450at 1136.398 kb on - strand, within CSW01_05450at 1136.470 kb on - strand, within CSW01_05450at 1136.474 kb on + strand, within CSW01_05450at 1136.477 kb on - strand, within CSW01_05450at 1136.482 kb on + strand, within CSW01_05450at 1136.482 kb on + strand, within CSW01_05450at 1136.621 kb on + strandat 1136.626 kb on + strandat 1136.629 kb on - strandat 1136.647 kb on - strandat 1136.716 kb on - strand, within CSW01_05455at 1136.807 kb on - strand, within CSW01_05455at 1136.819 kb on - strand, within CSW01_05455at 1136.866 kb on - strand, within CSW01_05455at 1136.910 kb on - strand, within CSW01_05455at 1136.910 kb on - strand, within CSW01_05455at 1136.913 kb on + strand, within CSW01_05455at 1137.193 kb on - strand, within CSW01_05455

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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1,135,086 - -0.8
1,135,129 + +0.1
1,135,129 + -0.1
1,135,129 + -1.8
1,135,129 + -0.0
1,135,187 + CSW01_05445 0.15 +0.2
1,135,216 - CSW01_05445 0.18 +0.1
1,135,221 - CSW01_05445 0.18 +0.4
1,135,235 - CSW01_05445 0.20 -1.0
1,135,294 - CSW01_05445 0.26 +0.7
1,135,312 + CSW01_05445 0.27 -0.3
1,135,414 - CSW01_05445 0.38 -0.6
1,135,450 + CSW01_05445 0.41 -0.3
1,135,616 + CSW01_05445 0.58 -0.3
1,135,624 - CSW01_05445 0.59 -0.4
1,135,624 - CSW01_05445 0.59 +0.2
1,135,624 - CSW01_05445 0.59 -0.2
1,135,624 - CSW01_05445 0.59 -0.9
1,135,649 - CSW01_05445 0.61 +0.1
1,135,734 - CSW01_05445 0.70 +0.2
1,135,791 - CSW01_05445 0.75 -0.5
1,135,791 - CSW01_05445 0.75 +0.6
1,135,857 + CSW01_05445 0.82 +0.3
1,135,857 + CSW01_05445 0.82 +0.4
1,135,940 - -0.3
1,135,968 - +0.3
1,135,987 + -0.3
1,136,004 + -0.4
1,136,149 + CSW01_05450 0.19 +0.1
1,136,154 + CSW01_05450 0.20 -0.3
1,136,157 - CSW01_05450 0.21 -0.1
1,136,193 + CSW01_05450 0.28 -0.7
1,136,201 - CSW01_05450 0.30 +0.1
1,136,201 - CSW01_05450 0.30 -1.0
1,136,282 + CSW01_05450 0.46 -0.7
1,136,335 + CSW01_05450 0.57 -0.0
1,136,398 - CSW01_05450 0.69 -0.3
1,136,470 - CSW01_05450 0.84 -0.1
1,136,474 + CSW01_05450 0.85 +0.1
1,136,477 - CSW01_05450 0.85 -0.2
1,136,482 + CSW01_05450 0.86 +0.5
1,136,482 + CSW01_05450 0.86 +0.3
1,136,621 + -0.3
1,136,626 + -0.2
1,136,629 - +1.1
1,136,647 - -0.2
1,136,716 - CSW01_05455 0.10 +0.1
1,136,807 - CSW01_05455 0.18 -0.3
1,136,819 - CSW01_05455 0.19 -0.1
1,136,866 - CSW01_05455 0.22 -0.3
1,136,910 - CSW01_05455 0.26 +0.5
1,136,910 - CSW01_05455 0.26 +0.7
1,136,913 + CSW01_05455 0.26 +0.5
1,137,193 - CSW01_05455 0.49 +0.5

Or see this region's nucleotide sequence