Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03420

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03415 and CSW01_03420 are separated by 86 nucleotidesCSW01_03420 and CSW01_03425 are separated by 46 nucleotides CSW01_03415: CSW01_03415 - lipoprotein NlpI, at 691,234 to 692,145 _03415 CSW01_03420: CSW01_03420 - MarR family transcriptional regulator, at 692,232 to 692,651 _03420 CSW01_03425: CSW01_03425 - MATE family efflux transporter, at 692,698 to 694,035 _03425 Position (kb) 692 693Strain fitness (log2 ratio) -1 0 1 2at 691.323 kb on + strandat 691.557 kb on + strand, within CSW01_03415at 691.557 kb on + strand, within CSW01_03415at 691.634 kb on + strand, within CSW01_03415at 691.830 kb on + strand, within CSW01_03415at 691.838 kb on + strand, within CSW01_03415at 691.853 kb on + strand, within CSW01_03415at 691.947 kb on + strand, within CSW01_03415at 691.955 kb on - strand, within CSW01_03415at 691.987 kb on + strand, within CSW01_03415at 692.027 kb on + strand, within CSW01_03415at 692.035 kb on - strand, within CSW01_03415at 692.073 kb on + strandat 692.115 kb on - strandat 692.118 kb on + strandat 692.395 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.430 kb on + strand, within CSW01_03420at 692.438 kb on - strand, within CSW01_03420at 692.438 kb on - strand, within CSW01_03420at 692.438 kb on - strand, within CSW01_03420at 692.457 kb on - strand, within CSW01_03420at 692.540 kb on - strand, within CSW01_03420at 692.540 kb on - strand, within CSW01_03420at 692.552 kb on + strand, within CSW01_03420at 692.635 kb on + strandat 692.648 kb on - strandat 692.763 kb on + strandat 692.770 kb on + strandat 692.771 kb on - strandat 692.771 kb on - strandat 692.844 kb on + strand, within CSW01_03425at 692.864 kb on - strand, within CSW01_03425at 692.869 kb on - strand, within CSW01_03425at 692.934 kb on - strand, within CSW01_03425at 692.953 kb on - strand, within CSW01_03425at 692.964 kb on - strand, within CSW01_03425at 692.968 kb on + strand, within CSW01_03425at 692.978 kb on - strand, within CSW01_03425at 692.993 kb on + strand, within CSW01_03425at 693.086 kb on + strand, within CSW01_03425at 693.086 kb on + strand, within CSW01_03425at 693.094 kb on - strand, within CSW01_03425at 693.119 kb on + strand, within CSW01_03425at 693.119 kb on + strand, within CSW01_03425at 693.127 kb on - strand, within CSW01_03425at 693.204 kb on + strand, within CSW01_03425at 693.250 kb on + strand, within CSW01_03425at 693.250 kb on + strand, within CSW01_03425at 693.253 kb on - strand, within CSW01_03425at 693.253 kb on - strand, within CSW01_03425at 693.258 kb on - strand, within CSW01_03425at 693.258 kb on - strand, within CSW01_03425at 693.286 kb on - strand, within CSW01_03425at 693.288 kb on + strand, within CSW01_03425at 693.288 kb on + strand, within CSW01_03425at 693.289 kb on - strand, within CSW01_03425at 693.296 kb on - strand, within CSW01_03425at 693.372 kb on - strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.453 kb on + strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.461 kb on - strand, within CSW01_03425at 693.492 kb on + strand, within CSW01_03425at 693.542 kb on + strand, within CSW01_03425at 693.562 kb on + strand, within CSW01_03425at 693.595 kb on - strand, within CSW01_03425at 693.630 kb on - strand, within CSW01_03425at 693.651 kb on + strand, within CSW01_03425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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691,323 + +0.8
691,557 + CSW01_03415 0.35 +0.3
691,557 + CSW01_03415 0.35 -0.2
691,634 + CSW01_03415 0.44 -0.1
691,830 + CSW01_03415 0.65 -0.5
691,838 + CSW01_03415 0.66 -0.2
691,853 + CSW01_03415 0.68 +0.1
691,947 + CSW01_03415 0.78 +0.3
691,955 - CSW01_03415 0.79 -0.3
691,987 + CSW01_03415 0.83 -0.1
692,027 + CSW01_03415 0.87 +0.2
692,035 - CSW01_03415 0.88 +0.2
692,073 + -0.5
692,115 - +0.3
692,118 + -0.2
692,395 + CSW01_03420 0.39 +0.3
692,430 + CSW01_03420 0.47 -0.3
692,430 + CSW01_03420 0.47 -0.5
692,430 + CSW01_03420 0.47 -0.7
692,430 + CSW01_03420 0.47 -1.4
692,438 - CSW01_03420 0.49 -0.0
692,438 - CSW01_03420 0.49 -0.9
692,438 - CSW01_03420 0.49 -0.0
692,457 - CSW01_03420 0.54 -0.7
692,540 - CSW01_03420 0.73 +0.2
692,540 - CSW01_03420 0.73 -1.7
692,552 + CSW01_03420 0.76 +0.2
692,635 + +0.3
692,648 - -0.2
692,763 + +2.2
692,770 + +0.7
692,771 - -0.0
692,771 - +0.3
692,844 + CSW01_03425 0.11 +0.6
692,864 - CSW01_03425 0.12 -0.3
692,869 - CSW01_03425 0.13 -0.0
692,934 - CSW01_03425 0.18 -1.2
692,953 - CSW01_03425 0.19 -0.2
692,964 - CSW01_03425 0.20 +0.2
692,968 + CSW01_03425 0.20 +0.3
692,978 - CSW01_03425 0.21 +0.9
692,993 + CSW01_03425 0.22 +0.3
693,086 + CSW01_03425 0.29 -0.4
693,086 + CSW01_03425 0.29 +0.5
693,094 - CSW01_03425 0.30 +0.7
693,119 + CSW01_03425 0.31 +0.3
693,119 + CSW01_03425 0.31 -0.5
693,127 - CSW01_03425 0.32 +0.1
693,204 + CSW01_03425 0.38 -0.1
693,250 + CSW01_03425 0.41 +0.5
693,250 + CSW01_03425 0.41 +1.2
693,253 - CSW01_03425 0.41 -0.2
693,253 - CSW01_03425 0.41 -0.4
693,258 - CSW01_03425 0.42 -0.2
693,258 - CSW01_03425 0.42 -1.0
693,286 - CSW01_03425 0.44 -0.7
693,288 + CSW01_03425 0.44 -0.0
693,288 + CSW01_03425 0.44 +0.1
693,289 - CSW01_03425 0.44 -0.2
693,296 - CSW01_03425 0.45 -0.5
693,372 - CSW01_03425 0.50 +0.9
693,453 + CSW01_03425 0.56 +1.3
693,453 + CSW01_03425 0.56 -0.4
693,453 + CSW01_03425 0.56 -1.5
693,461 - CSW01_03425 0.57 +0.5
693,461 - CSW01_03425 0.57 -0.3
693,461 - CSW01_03425 0.57 +0.8
693,492 + CSW01_03425 0.59 +0.6
693,542 + CSW01_03425 0.63 +0.3
693,562 + CSW01_03425 0.65 -0.2
693,595 - CSW01_03425 0.67 -0.1
693,630 - CSW01_03425 0.70 +0.6
693,651 + CSW01_03425 0.71 -0.8

Or see this region's nucleotide sequence