Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03150

Experiment: LB_Aerobic_120MIN_ZN10B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03145 and CSW01_03150 are separated by 90 nucleotidesCSW01_03150 and CSW01_03155 are separated by 73 nucleotidesCSW01_03155 and CSW01_03160 are separated by 124 nucleotides CSW01_03145: CSW01_03145 - polynucleotide adenylyltransferase PcnB, at 619,614 to 620,987 _03145 CSW01_03150: CSW01_03150 - tRNA glutamyl-Q(34) synthetase GluQRS, at 621,078 to 621,968 _03150 CSW01_03155: CSW01_03155 - RNA polymerase-binding transcription factor DksA, at 622,042 to 622,488 _03155 CSW01_03160: CSW01_03160 - DNA/RNA nuclease SfsA, at 622,613 to 623,383 _03160 Position (kb) 621 622Strain fitness (log2 ratio) -2 -1 0 1 2at 620.688 kb on - strand, within CSW01_03145at 620.688 kb on - strand, within CSW01_03145at 620.688 kb on - strand, within CSW01_03145at 620.780 kb on - strand, within CSW01_03145at 621.022 kb on + strandat 621.030 kb on - strandat 621.203 kb on + strand, within CSW01_03150at 621.211 kb on - strand, within CSW01_03150at 621.237 kb on + strand, within CSW01_03150at 621.257 kb on + strand, within CSW01_03150at 621.336 kb on + strand, within CSW01_03150at 621.355 kb on + strand, within CSW01_03150at 621.395 kb on + strand, within CSW01_03150at 621.436 kb on - strand, within CSW01_03150at 621.436 kb on - strand, within CSW01_03150at 621.518 kb on - strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.684 kb on + strand, within CSW01_03150at 621.685 kb on + strand, within CSW01_03150at 621.692 kb on - strand, within CSW01_03150at 621.692 kb on - strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.694 kb on + strand, within CSW01_03150at 621.765 kb on - strand, within CSW01_03150at 621.790 kb on - strand, within CSW01_03150at 621.801 kb on + strand, within CSW01_03150at 621.819 kb on - strand, within CSW01_03150at 621.842 kb on + strand, within CSW01_03150at 621.953 kb on + strandat 622.028 kb on - strandat 622.096 kb on + strand, within CSW01_03155at 622.106 kb on - strand, within CSW01_03155at 622.175 kb on + strand, within CSW01_03155at 622.240 kb on - strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.242 kb on + strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.250 kb on - strand, within CSW01_03155at 622.309 kb on - strand, within CSW01_03155at 622.364 kb on + strand, within CSW01_03155at 622.400 kb on + strand, within CSW01_03155at 622.402 kb on + strand, within CSW01_03155at 622.410 kb on - strand, within CSW01_03155at 622.435 kb on + strand, within CSW01_03155at 622.646 kb on - strandat 622.686 kb on + strandat 622.686 kb on + strandat 622.694 kb on - strand, within CSW01_03160at 622.737 kb on + strand, within CSW01_03160at 622.749 kb on + strand, within CSW01_03160at 622.803 kb on - strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.833 kb on + strand, within CSW01_03160at 622.848 kb on + strand, within CSW01_03160at 622.856 kb on + strand, within CSW01_03160at 622.864 kb on - strand, within CSW01_03160at 622.891 kb on + strand, within CSW01_03160at 622.908 kb on + strand, within CSW01_03160at 622.945 kb on + strand, within CSW01_03160at 622.953 kb on - strand, within CSW01_03160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
remove
620,688 - CSW01_03145 0.78 -0.1
620,688 - CSW01_03145 0.78 +0.6
620,688 - CSW01_03145 0.78 -0.3
620,780 - CSW01_03145 0.85 +0.9
621,022 + +1.3
621,030 - -0.3
621,203 + CSW01_03150 0.14 +0.0
621,211 - CSW01_03150 0.15 +0.1
621,237 + CSW01_03150 0.18 +1.9
621,257 + CSW01_03150 0.20 -0.2
621,336 + CSW01_03150 0.29 -0.7
621,355 + CSW01_03150 0.31 +0.0
621,395 + CSW01_03150 0.36 -0.2
621,436 - CSW01_03150 0.40 -0.5
621,436 - CSW01_03150 0.40 -0.2
621,518 - CSW01_03150 0.49 -1.3
621,684 + CSW01_03150 0.68 -0.8
621,684 + CSW01_03150 0.68 +0.8
621,684 + CSW01_03150 0.68 -0.2
621,684 + CSW01_03150 0.68 -1.7
621,684 + CSW01_03150 0.68 -0.1
621,684 + CSW01_03150 0.68 -0.4
621,685 + CSW01_03150 0.68 +0.2
621,692 - CSW01_03150 0.69 +0.6
621,692 - CSW01_03150 0.69 -1.1
621,694 + CSW01_03150 0.69 -0.0
621,694 + CSW01_03150 0.69 +0.0
621,694 + CSW01_03150 0.69 -0.1
621,694 + CSW01_03150 0.69 -0.7
621,765 - CSW01_03150 0.77 +0.5
621,790 - CSW01_03150 0.80 +0.2
621,801 + CSW01_03150 0.81 +0.1
621,819 - CSW01_03150 0.83 +0.0
621,842 + CSW01_03150 0.86 +0.0
621,953 + +0.0
622,028 - -1.1
622,096 + CSW01_03155 0.12 -1.7
622,106 - CSW01_03155 0.14 +0.9
622,175 + CSW01_03155 0.30 +0.1
622,240 - CSW01_03155 0.44 -0.3
622,242 + CSW01_03155 0.45 -1.6
622,242 + CSW01_03155 0.45 -0.5
622,242 + CSW01_03155 0.45 -1.6
622,242 + CSW01_03155 0.45 -1.2
622,242 + CSW01_03155 0.45 -1.8
622,242 + CSW01_03155 0.45 -0.9
622,250 - CSW01_03155 0.47 -0.1
622,250 - CSW01_03155 0.47 -1.5
622,250 - CSW01_03155 0.47 -0.4
622,250 - CSW01_03155 0.47 -1.0
622,250 - CSW01_03155 0.47 -1.1
622,250 - CSW01_03155 0.47 +0.8
622,250 - CSW01_03155 0.47 -0.1
622,250 - CSW01_03155 0.47 -0.3
622,250 - CSW01_03155 0.47 -1.4
622,250 - CSW01_03155 0.47 -0.3
622,309 - CSW01_03155 0.60 -2.0
622,364 + CSW01_03155 0.72 -1.2
622,400 + CSW01_03155 0.80 -0.5
622,402 + CSW01_03155 0.81 -1.1
622,410 - CSW01_03155 0.82 +0.2
622,435 + CSW01_03155 0.88 -1.8
622,646 - +0.2
622,686 + +0.2
622,686 + -0.5
622,694 - CSW01_03160 0.11 -0.8
622,737 + CSW01_03160 0.16 -0.6
622,749 + CSW01_03160 0.18 +0.4
622,803 - CSW01_03160 0.25 +0.1
622,833 + CSW01_03160 0.29 +0.7
622,833 + CSW01_03160 0.29 -0.0
622,848 + CSW01_03160 0.30 +0.5
622,856 + CSW01_03160 0.32 -0.2
622,864 - CSW01_03160 0.33 +0.4
622,891 + CSW01_03160 0.36 +0.3
622,908 + CSW01_03160 0.38 -0.4
622,945 + CSW01_03160 0.43 +0.2
622,953 - CSW01_03160 0.44 -0.5

Or see this region's nucleotide sequence