Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02790

Experiment: LB_Aerobic_120MIN_ZN10B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02775 and CSW01_02780 are separated by 7 nucleotidesCSW01_02780 and CSW01_02785 overlap by 38 nucleotidesCSW01_02785 and CSW01_02790 overlap by 4 nucleotidesCSW01_02790 and CSW01_02795 overlap by 4 nucleotidesCSW01_02795 and CSW01_02800 are separated by 108 nucleotides CSW01_02775: CSW01_02775 - glycerol-3-phosphate acyltransferase, at 555,938 to 556,564 _02775 CSW01_02780: CSW01_02780 - hypothetical protein, at 556,572 to 556,754 _02780 CSW01_02785: CSW01_02785 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 556,717 to 557,106 _02785 CSW01_02790: CSW01_02790 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 557,103 to 557,609 _02790 CSW01_02795: CSW01_02795 - undecaprenyl-diphosphatase, at 557,606 to 558,409 _02795 CSW01_02800: CSW01_02800 - cell division protein FtsB, at 558,518 to 558,808 _02800 Position (kb) 557 558Strain fitness (log2 ratio) -2 -1 0 1 2 3at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.109 kb on - strand, within CSW01_02775at 556.111 kb on - strand, within CSW01_02775at 556.123 kb on - strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.127 kb on + strand, within CSW01_02775at 556.133 kb on + strand, within CSW01_02775at 556.135 kb on - strand, within CSW01_02775at 556.135 kb on - strand, within CSW01_02775at 556.159 kb on - strand, within CSW01_02775at 556.181 kb on - strand, within CSW01_02775at 556.182 kb on + strand, within CSW01_02775at 556.197 kb on + strand, within CSW01_02775at 556.206 kb on + strand, within CSW01_02775at 556.246 kb on - strand, within CSW01_02775at 556.293 kb on - strand, within CSW01_02775at 556.299 kb on - strand, within CSW01_02775at 556.357 kb on - strand, within CSW01_02775at 556.385 kb on + strand, within CSW01_02775at 556.385 kb on + strand, within CSW01_02775at 556.430 kb on + strand, within CSW01_02775at 556.445 kb on - strand, within CSW01_02775at 556.468 kb on + strand, within CSW01_02775at 556.468 kb on + strand, within CSW01_02775at 556.473 kb on + strand, within CSW01_02775at 556.488 kb on + strand, within CSW01_02775at 556.496 kb on - strand, within CSW01_02775at 556.559 kb on + strandat 556.569 kb on + strandat 556.569 kb on + strandat 556.569 kb on + strandat 556.569 kb on + strandat 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.664 kb on + strand, within CSW01_02780at 556.669 kb on + strand, within CSW01_02780at 556.672 kb on - strand, within CSW01_02780at 556.739 kb on + strandat 557.128 kb on + strandat 557.153 kb on + strandat 557.211 kb on + strand, within CSW01_02790at 557.219 kb on - strand, within CSW01_02790at 557.247 kb on + strand, within CSW01_02790at 557.291 kb on + strand, within CSW01_02790at 557.291 kb on + strand, within CSW01_02790at 557.414 kb on - strand, within CSW01_02790at 557.427 kb on - strand, within CSW01_02790at 557.432 kb on - strand, within CSW01_02790at 557.546 kb on + strand, within CSW01_02790at 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.563 kb on + strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.571 kb on - strandat 557.639 kb on + strandat 557.645 kb on + strandat 557.710 kb on - strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.717 kb on + strand, within CSW01_02795at 557.725 kb on - strand, within CSW01_02795at 557.771 kb on + strand, within CSW01_02795at 557.878 kb on + strand, within CSW01_02795at 557.924 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.972 kb on - strand, within CSW01_02795at 557.987 kb on - strand, within CSW01_02795at 558.005 kb on - strand, within CSW01_02795at 558.013 kb on + strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.120 kb on + strand, within CSW01_02795at 558.132 kb on + strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.145 kb on - strand, within CSW01_02795at 558.224 kb on + strand, within CSW01_02795at 558.224 kb on - strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.269 kb on + strand, within CSW01_02795at 558.293 kb on + strand, within CSW01_02795at 558.383 kb on - strandat 558.383 kb on - strandat 558.506 kb on - strandat 558.515 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
remove
556,109 - CSW01_02775 0.27 -0.1
556,109 - CSW01_02775 0.27 -0.2
556,109 - CSW01_02775 0.27 -0.6
556,109 - CSW01_02775 0.27 +0.7
556,109 - CSW01_02775 0.27 -0.4
556,109 - CSW01_02775 0.27 -0.3
556,109 - CSW01_02775 0.27 +1.1
556,109 - CSW01_02775 0.27 +3.6
556,109 - CSW01_02775 0.27 +0.3
556,109 - CSW01_02775 0.27 -0.5
556,109 - CSW01_02775 0.27 +0.4
556,109 - CSW01_02775 0.27 -0.8
556,109 - CSW01_02775 0.27 -0.2
556,109 - CSW01_02775 0.27 +0.4
556,109 - CSW01_02775 0.27 +0.2
556,111 - CSW01_02775 0.28 -0.4
556,123 - CSW01_02775 0.30 -0.4
556,127 + CSW01_02775 0.30 -0.1
556,127 + CSW01_02775 0.30 +0.4
556,127 + CSW01_02775 0.30 -1.3
556,127 + CSW01_02775 0.30 +0.2
556,127 + CSW01_02775 0.30 -0.6
556,127 + CSW01_02775 0.30 -0.1
556,127 + CSW01_02775 0.30 +0.3
556,133 + CSW01_02775 0.31 -0.1
556,135 - CSW01_02775 0.31 -1.7
556,135 - CSW01_02775 0.31 -0.0
556,159 - CSW01_02775 0.35 -0.1
556,181 - CSW01_02775 0.39 -0.5
556,182 + CSW01_02775 0.39 -1.1
556,197 + CSW01_02775 0.41 +0.1
556,206 + CSW01_02775 0.43 -0.9
556,246 - CSW01_02775 0.49 +0.5
556,293 - CSW01_02775 0.57 +0.3
556,299 - CSW01_02775 0.58 +0.0
556,357 - CSW01_02775 0.67 +0.8
556,385 + CSW01_02775 0.71 +1.2
556,385 + CSW01_02775 0.71 +0.0
556,430 + CSW01_02775 0.78 +0.2
556,445 - CSW01_02775 0.81 +0.3
556,468 + CSW01_02775 0.85 -0.9
556,468 + CSW01_02775 0.85 -0.3
556,473 + CSW01_02775 0.85 -0.6
556,488 + CSW01_02775 0.88 +0.7
556,496 - CSW01_02775 0.89 -0.4
556,559 + +0.6
556,569 + +0.2
556,569 + +0.2
556,569 + +0.3
556,569 + -0.4
556,664 + CSW01_02780 0.50 +0.4
556,664 + CSW01_02780 0.50 +0.2
556,664 + CSW01_02780 0.50 +0.3
556,664 + CSW01_02780 0.50 -0.2
556,669 + CSW01_02780 0.53 -0.1
556,672 - CSW01_02780 0.55 +0.3
556,739 + +0.1
557,128 + -0.9
557,153 + -0.3
557,211 + CSW01_02790 0.21 -2.0
557,219 - CSW01_02790 0.23 +1.3
557,247 + CSW01_02790 0.28 -1.3
557,291 + CSW01_02790 0.37 -0.4
557,291 + CSW01_02790 0.37 -1.5
557,414 - CSW01_02790 0.61 +2.3
557,427 - CSW01_02790 0.64 -1.3
557,432 - CSW01_02790 0.65 +1.1
557,546 + CSW01_02790 0.87 +0.3
557,563 + -0.1
557,563 + +0.1
557,563 + -0.8
557,563 + -0.2
557,571 - +0.3
557,571 - -0.5
557,571 - -1.3
557,571 - -0.9
557,571 - -0.2
557,571 - -1.0
557,639 + -0.6
557,645 + +1.5
557,710 - CSW01_02795 0.13 +0.3
557,717 + CSW01_02795 0.14 -0.9
557,717 + CSW01_02795 0.14 +0.5
557,717 + CSW01_02795 0.14 +1.1
557,725 - CSW01_02795 0.15 +0.2
557,771 + CSW01_02795 0.21 -0.1
557,878 + CSW01_02795 0.34 +0.2
557,924 + CSW01_02795 0.40 -0.4
557,943 + CSW01_02795 0.42 -0.2
557,943 + CSW01_02795 0.42 -0.4
557,951 - CSW01_02795 0.43 -1.5
557,951 - CSW01_02795 0.43 -0.8
557,951 - CSW01_02795 0.43 +0.6
557,972 - CSW01_02795 0.46 -0.2
557,987 - CSW01_02795 0.47 -1.3
558,005 - CSW01_02795 0.50 +0.8
558,013 + CSW01_02795 0.51 +0.0
558,021 - CSW01_02795 0.52 -0.2
558,021 - CSW01_02795 0.52 +0.9
558,021 - CSW01_02795 0.52 -0.2
558,120 + CSW01_02795 0.64 +0.7
558,132 + CSW01_02795 0.65 -1.1
558,140 - CSW01_02795 0.66 +0.3
558,140 - CSW01_02795 0.66 +1.2
558,145 - CSW01_02795 0.67 +0.1
558,224 + CSW01_02795 0.77 -0.2
558,224 - CSW01_02795 0.77 +1.3
558,242 + CSW01_02795 0.79 +0.2
558,242 + CSW01_02795 0.79 +0.1
558,242 + CSW01_02795 0.79 -0.1
558,242 + CSW01_02795 0.79 +0.8
558,250 - CSW01_02795 0.80 +0.5
558,250 - CSW01_02795 0.80 +0.3
558,269 + CSW01_02795 0.82 +1.0
558,293 + CSW01_02795 0.85 -0.5
558,383 - -0.4
558,383 - +0.9
558,506 - +0.2
558,515 + -0.3

Or see this region's nucleotide sequence