Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02675

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02665 and CSW01_02670 are separated by 177 nucleotidesCSW01_02670 and CSW01_02675 are separated by 47 nucleotidesCSW01_02675 and CSW01_02680 are separated by 30 nucleotidesCSW01_02680 and CSW01_02685 are separated by 138 nucleotides CSW01_02665: CSW01_02665 - peptidase M23, at 534,158 to 535,438 _02665 CSW01_02670: CSW01_02670 - hypothetical protein, at 535,616 to 535,843 _02670 CSW01_02675: CSW01_02675 - hypothetical protein, at 535,891 to 536,259 _02675 CSW01_02680: CSW01_02680 - WYL domain-containing protein, at 536,290 to 537,024 _02680 CSW01_02685: CSW01_02685 - hypothetical protein, at 537,163 to 537,339 _02685 Position (kb) 535 536 537Strain fitness (log2 ratio) -1 0 1at 534.898 kb on + strand, within CSW01_02665at 534.919 kb on - strand, within CSW01_02665at 534.921 kb on + strand, within CSW01_02665at 534.929 kb on - strand, within CSW01_02665at 534.942 kb on - strand, within CSW01_02665at 534.947 kb on + strand, within CSW01_02665at 534.948 kb on - strand, within CSW01_02665at 534.952 kb on + strand, within CSW01_02665at 534.955 kb on - strand, within CSW01_02665at 534.982 kb on + strand, within CSW01_02665at 534.983 kb on - strand, within CSW01_02665at 535.066 kb on + strand, within CSW01_02665at 535.119 kb on - strand, within CSW01_02665at 535.147 kb on - strand, within CSW01_02665at 535.149 kb on - strand, within CSW01_02665at 535.186 kb on - strand, within CSW01_02665at 535.273 kb on - strand, within CSW01_02665at 535.291 kb on + strand, within CSW01_02665at 535.319 kb on + strandat 535.359 kb on - strandat 535.503 kb on + strandat 535.535 kb on + strandat 535.535 kb on + strandat 535.640 kb on + strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.652 kb on - strand, within CSW01_02670at 535.675 kb on - strand, within CSW01_02670at 535.734 kb on - strand, within CSW01_02670at 535.898 kb on - strandat 535.898 kb on - strandat 535.902 kb on + strandat 535.946 kb on - strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.955 kb on + strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.989 kb on - strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.017 kb on + strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.081 kb on - strand, within CSW01_02675at 536.091 kb on - strand, within CSW01_02675at 536.148 kb on + strand, within CSW01_02675at 536.189 kb on + strand, within CSW01_02675at 536.226 kb on - strandat 536.238 kb on + strandat 536.239 kb on - strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on - strandat 536.264 kb on + strandat 536.264 kb on + strandat 536.271 kb on + strandat 536.271 kb on + strandat 536.279 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.365 kb on + strand, within CSW01_02680at 536.385 kb on - strand, within CSW01_02680at 536.404 kb on + strand, within CSW01_02680at 536.412 kb on - strand, within CSW01_02680at 536.419 kb on - strand, within CSW01_02680at 536.455 kb on + strand, within CSW01_02680at 536.464 kb on - strand, within CSW01_02680at 536.485 kb on - strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.560 kb on + strand, within CSW01_02680at 536.582 kb on + strand, within CSW01_02680at 536.679 kb on - strand, within CSW01_02680at 536.723 kb on - strand, within CSW01_02680at 536.751 kb on + strand, within CSW01_02680at 536.846 kb on + strand, within CSW01_02680at 536.853 kb on + strand, within CSW01_02680at 536.880 kb on + strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.916 kb on + strand, within CSW01_02680at 536.924 kb on - strand, within CSW01_02680at 536.937 kb on + strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.964 kb on - strandat 536.964 kb on - strandat 536.968 kb on + strandat 536.990 kb on + strandat 537.019 kb on + strandat 537.054 kb on - strandat 537.062 kb on - strandat 537.082 kb on + strandat 537.082 kb on + strandat 537.145 kb on + strandat 537.148 kb on - strandat 537.170 kb on + strandat 537.170 kb on + strandat 537.178 kb on - strandat 537.178 kb on - strandat 537.182 kb on + strand, within CSW01_02685at 537.190 kb on - strand, within CSW01_02685at 537.197 kb on - strand, within CSW01_02685at 537.205 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.243 kb on - strand, within CSW01_02685

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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534,898 + CSW01_02665 0.58 -0.4
534,919 - CSW01_02665 0.59 -1.3
534,921 + CSW01_02665 0.60 +1.1
534,929 - CSW01_02665 0.60 +0.4
534,942 - CSW01_02665 0.61 +0.3
534,947 + CSW01_02665 0.62 -0.4
534,948 - CSW01_02665 0.62 +1.0
534,952 + CSW01_02665 0.62 -0.1
534,955 - CSW01_02665 0.62 -0.2
534,982 + CSW01_02665 0.64 -0.5
534,983 - CSW01_02665 0.64 +0.1
535,066 + CSW01_02665 0.71 -0.5
535,119 - CSW01_02665 0.75 +0.6
535,147 - CSW01_02665 0.77 +0.2
535,149 - CSW01_02665 0.77 +0.4
535,186 - CSW01_02665 0.80 +0.2
535,273 - CSW01_02665 0.87 +0.2
535,291 + CSW01_02665 0.88 +0.1
535,319 + +0.4
535,359 - +0.7
535,503 + +0.1
535,535 + -0.1
535,535 + +0.7
535,640 + CSW01_02670 0.11 -0.1
535,648 - CSW01_02670 0.14 +0.8
535,648 - CSW01_02670 0.14 +0.4
535,652 - CSW01_02670 0.16 -0.5
535,675 - CSW01_02670 0.26 -0.6
535,734 - CSW01_02670 0.52 -1.5
535,898 - -0.3
535,898 - -0.1
535,902 + +0.0
535,946 - CSW01_02675 0.15 +0.2
535,948 + CSW01_02675 0.15 +0.1
535,948 + CSW01_02675 0.15 +0.4
535,948 + CSW01_02675 0.15 -1.2
535,955 + CSW01_02675 0.17 +0.2
535,956 - CSW01_02675 0.18 +0.8
535,956 - CSW01_02675 0.18 -0.9
535,956 - CSW01_02675 0.18 +0.2
535,989 - CSW01_02675 0.27 +0.8
536,016 + CSW01_02675 0.34 -0.6
536,016 + CSW01_02675 0.34 +0.1
536,016 + CSW01_02675 0.34 -0.5
536,017 + CSW01_02675 0.34 +1.1
536,024 - CSW01_02675 0.36 -0.3
536,024 - CSW01_02675 0.36 +0.6
536,024 - CSW01_02675 0.36 +0.0
536,024 - CSW01_02675 0.36 +0.2
536,024 - CSW01_02675 0.36 +1.7
536,081 - CSW01_02675 0.51 -0.2
536,091 - CSW01_02675 0.54 -0.0
536,148 + CSW01_02675 0.70 +0.0
536,189 + CSW01_02675 0.81 +0.5
536,226 - -0.4
536,238 + -0.3
536,239 - -0.4
536,243 + -0.6
536,243 + +0.1
536,243 + +0.2
536,243 - +0.3
536,264 + -0.5
536,264 + -0.1
536,271 + +0.3
536,271 + +0.1
536,279 - +0.8
536,326 - -0.2
536,326 - +0.2
536,326 - -0.0
536,365 + CSW01_02680 0.10 +0.6
536,385 - CSW01_02680 0.13 -0.1
536,404 + CSW01_02680 0.16 +0.9
536,412 - CSW01_02680 0.17 +0.3
536,419 - CSW01_02680 0.18 -0.2
536,455 + CSW01_02680 0.22 +0.1
536,464 - CSW01_02680 0.24 -0.4
536,485 - CSW01_02680 0.27 -0.8
536,526 + CSW01_02680 0.32 +0.6
536,526 + CSW01_02680 0.32 -0.5
536,526 + CSW01_02680 0.32 -0.5
536,534 - CSW01_02680 0.33 +0.1
536,534 - CSW01_02680 0.33 -0.1
536,560 + CSW01_02680 0.37 -1.0
536,582 + CSW01_02680 0.40 +0.2
536,679 - CSW01_02680 0.53 -0.1
536,723 - CSW01_02680 0.59 -0.2
536,751 + CSW01_02680 0.63 +0.4
536,846 + CSW01_02680 0.76 -0.3
536,853 + CSW01_02680 0.77 -0.4
536,880 + CSW01_02680 0.80 -1.7
536,888 - CSW01_02680 0.81 +0.4
536,888 - CSW01_02680 0.81 +0.5
536,916 + CSW01_02680 0.85 +0.8
536,924 - CSW01_02680 0.86 -0.0
536,937 + CSW01_02680 0.88 -0.3
536,945 - CSW01_02680 0.89 +1.1
536,945 - CSW01_02680 0.89 -1.2
536,964 - -0.5
536,964 - -0.4
536,968 + -0.0
536,990 + -0.3
537,019 + -0.1
537,054 - -0.4
537,062 - +0.9
537,082 + +0.3
537,082 + -0.6
537,145 + +0.1
537,148 - +0.3
537,170 + -0.2
537,170 + +0.2
537,178 - -0.5
537,178 - -0.4
537,182 + CSW01_02685 0.11 +0.9
537,190 - CSW01_02685 0.15 -0.2
537,197 - CSW01_02685 0.19 +1.2
537,205 + CSW01_02685 0.24 -0.7
537,235 + CSW01_02685 0.41 +1.1
537,235 + CSW01_02685 0.41 +0.9
537,235 + CSW01_02685 0.41 -0.4
537,243 - CSW01_02685 0.45 -0.5

Or see this region's nucleotide sequence