Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02475

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02465 and CSW01_02470 are separated by 111 nucleotidesCSW01_02470 and CSW01_02475 are separated by 84 nucleotidesCSW01_02475 and CSW01_02480 are separated by 37 nucleotidesCSW01_02480 and CSW01_02485 are separated by 80 nucleotides CSW01_02465: CSW01_02465 - twitching motility protein PilT, at 491,088 to 492,194 _02465 CSW01_02470: CSW01_02470 - LuxR family transcriptional regulator, at 492,306 to 493,109 _02470 CSW01_02475: CSW01_02475 - tyrosine--tRNA ligase, at 493,194 to 494,498 _02475 CSW01_02480: CSW01_02480 - Holliday junction resolvase RuvX, at 494,536 to 494,958 _02480 CSW01_02485: CSW01_02485 - YqgE/AlgH family protein, at 495,039 to 495,602 _02485 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 492.236 kb on - strandat 492.261 kb on + strandat 492.266 kb on + strandat 492.399 kb on + strand, within CSW01_02470at 492.399 kb on + strand, within CSW01_02470at 492.407 kb on - strand, within CSW01_02470at 492.417 kb on - strand, within CSW01_02470at 492.519 kb on - strand, within CSW01_02470at 492.556 kb on - strand, within CSW01_02470at 492.579 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.796 kb on - strand, within CSW01_02470at 492.855 kb on + strand, within CSW01_02470at 492.855 kb on + strand, within CSW01_02470at 492.856 kb on + strand, within CSW01_02470at 492.869 kb on + strand, within CSW01_02470at 492.874 kb on + strand, within CSW01_02470at 492.908 kb on + strand, within CSW01_02470at 492.910 kb on + strand, within CSW01_02470at 492.916 kb on - strand, within CSW01_02470at 492.916 kb on - strand, within CSW01_02470at 492.918 kb on - strand, within CSW01_02470at 492.918 kb on - strand, within CSW01_02470at 492.934 kb on + strand, within CSW01_02470at 492.954 kb on + strand, within CSW01_02470at 492.954 kb on + strand, within CSW01_02470at 493.001 kb on - strand, within CSW01_02470at 493.018 kb on - strand, within CSW01_02470at 493.035 kb on - strandat 493.038 kb on - strandat 493.111 kb on - strandat 493.150 kb on - strandat 493.173 kb on + strandat 493.225 kb on - strandat 493.243 kb on + strandat 493.243 kb on + strandat 493.243 kb on + strandat 493.251 kb on - strandat 493.271 kb on + strandat 493.271 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.279 kb on - strandat 493.279 kb on - strandat 493.286 kb on - strandat 493.286 kb on - strandat 493.322 kb on + strandat 493.330 kb on + strand, within CSW01_02475at 493.384 kb on + strand, within CSW01_02475at 493.427 kb on + strand, within CSW01_02475at 493.481 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.492 kb on - strand, within CSW01_02475at 493.492 kb on - strand, within CSW01_02475at 493.511 kb on - strand, within CSW01_02475at 493.516 kb on - strand, within CSW01_02475at 493.522 kb on + strand, within CSW01_02475at 493.552 kb on - strand, within CSW01_02475at 493.568 kb on - strand, within CSW01_02475at 493.589 kb on + strand, within CSW01_02475at 493.692 kb on - strand, within CSW01_02475at 493.710 kb on + strand, within CSW01_02475at 493.710 kb on + strand, within CSW01_02475at 493.723 kb on - strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.755 kb on + strand, within CSW01_02475at 493.780 kb on - strand, within CSW01_02475at 493.805 kb on - strand, within CSW01_02475at 493.837 kb on + strand, within CSW01_02475at 493.840 kb on + strand, within CSW01_02475at 493.848 kb on - strand, within CSW01_02475at 493.859 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.874 kb on + strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.882 kb on + strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.947 kb on - strand, within CSW01_02475at 494.019 kb on + strand, within CSW01_02475at 494.045 kb on - strand, within CSW01_02475at 494.051 kb on + strand, within CSW01_02475at 494.141 kb on - strand, within CSW01_02475at 494.143 kb on + strand, within CSW01_02475at 494.155 kb on + strand, within CSW01_02475at 494.159 kb on + strand, within CSW01_02475at 494.216 kb on - strand, within CSW01_02475at 494.266 kb on + strand, within CSW01_02475at 494.311 kb on + strand, within CSW01_02475at 494.316 kb on + strand, within CSW01_02475at 494.316 kb on + strand, within CSW01_02475at 494.326 kb on + strand, within CSW01_02475at 494.399 kb on + strandat 494.413 kb on + strandat 494.418 kb on + strandat 494.493 kb on - strandat 494.515 kb on - strandat 494.542 kb on - strandat 495.068 kb on + strandat 495.068 kb on + strandat 495.068 kb on + strandat 495.071 kb on - strandat 495.100 kb on - strand, within CSW01_02485at 495.157 kb on - strand, within CSW01_02485at 495.160 kb on + strand, within CSW01_02485at 495.211 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.305 kb on - strand, within CSW01_02485at 495.331 kb on - strand, within CSW01_02485at 495.350 kb on - strand, within CSW01_02485at 495.487 kb on - strand, within CSW01_02485

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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492,236 - +0.2
492,261 + -0.2
492,266 + -0.3
492,399 + CSW01_02470 0.12 -0.2
492,399 + CSW01_02470 0.12 +0.4
492,407 - CSW01_02470 0.13 +0.7
492,417 - CSW01_02470 0.14 +0.8
492,519 - CSW01_02470 0.26 +1.3
492,556 - CSW01_02470 0.31 +0.0
492,579 + CSW01_02470 0.34 -1.5
492,727 + CSW01_02470 0.52 +0.3
492,727 + CSW01_02470 0.52 -2.0
492,727 + CSW01_02470 0.52 -0.1
492,727 + CSW01_02470 0.52 +0.2
492,727 + CSW01_02470 0.52 +0.7
492,727 + CSW01_02470 0.52 -0.1
492,727 + CSW01_02470 0.52 -0.4
492,735 - CSW01_02470 0.53 -0.1
492,735 - CSW01_02470 0.53 -1.0
492,735 - CSW01_02470 0.53 -1.1
492,735 - CSW01_02470 0.53 -0.6
492,735 - CSW01_02470 0.53 +0.0
492,758 + CSW01_02470 0.56 +2.7
492,758 + CSW01_02470 0.56 +0.3
492,758 + CSW01_02470 0.56 +0.1
492,796 - CSW01_02470 0.61 +0.4
492,855 + CSW01_02470 0.68 +0.3
492,855 + CSW01_02470 0.68 +0.2
492,856 + CSW01_02470 0.68 -0.2
492,869 + CSW01_02470 0.70 +0.1
492,874 + CSW01_02470 0.71 -0.7
492,908 + CSW01_02470 0.75 -0.2
492,910 + CSW01_02470 0.75 -0.4
492,916 - CSW01_02470 0.76 -0.2
492,916 - CSW01_02470 0.76 +1.3
492,918 - CSW01_02470 0.76 +3.8
492,918 - CSW01_02470 0.76 +0.1
492,934 + CSW01_02470 0.78 -0.5
492,954 + CSW01_02470 0.81 -0.8
492,954 + CSW01_02470 0.81 -0.2
493,001 - CSW01_02470 0.86 -0.2
493,018 - CSW01_02470 0.89 -0.6
493,035 - -0.2
493,038 - -0.4
493,111 - -0.2
493,150 - -2.0
493,173 + +0.3
493,225 - +0.4
493,243 + +0.2
493,243 + +0.5
493,243 + -0.1
493,251 - +0.2
493,271 + -0.2
493,271 + +0.8
493,278 + +0.5
493,278 + -0.0
493,278 + +0.1
493,278 + -1.3
493,278 + -0.0
493,279 - +0.2
493,279 - +0.4
493,286 - +0.3
493,286 - +0.7
493,322 + +0.5
493,330 + CSW01_02475 0.10 -0.2
493,384 + CSW01_02475 0.15 -0.1
493,427 + CSW01_02475 0.18 +0.2
493,481 + CSW01_02475 0.22 +0.2
493,484 + CSW01_02475 0.22 -0.1
493,484 + CSW01_02475 0.22 +0.7
493,484 + CSW01_02475 0.22 +0.3
493,484 + CSW01_02475 0.22 -1.3
493,484 + CSW01_02475 0.22 -0.1
493,484 + CSW01_02475 0.22 +0.2
493,484 + CSW01_02475 0.22 +0.1
493,484 + CSW01_02475 0.22 +1.7
493,492 - CSW01_02475 0.23 -0.1
493,492 - CSW01_02475 0.23 +0.1
493,511 - CSW01_02475 0.24 -1.0
493,516 - CSW01_02475 0.25 +0.7
493,522 + CSW01_02475 0.25 -0.5
493,552 - CSW01_02475 0.27 -0.5
493,568 - CSW01_02475 0.29 -0.5
493,589 + CSW01_02475 0.30 +0.3
493,692 - CSW01_02475 0.38 +0.8
493,710 + CSW01_02475 0.40 +0.3
493,710 + CSW01_02475 0.40 -0.4
493,723 - CSW01_02475 0.41 -0.5
493,736 + CSW01_02475 0.42 +0.2
493,736 + CSW01_02475 0.42 -0.5
493,736 + CSW01_02475 0.42 +0.2
493,755 + CSW01_02475 0.43 +0.8
493,780 - CSW01_02475 0.45 -0.5
493,805 - CSW01_02475 0.47 -0.4
493,837 + CSW01_02475 0.49 -0.6
493,840 + CSW01_02475 0.50 +0.4
493,848 - CSW01_02475 0.50 +1.7
493,859 + CSW01_02475 0.51 +0.2
493,867 + CSW01_02475 0.52 -0.9
493,867 + CSW01_02475 0.52 +1.2
493,867 + CSW01_02475 0.52 -0.1
493,867 + CSW01_02475 0.52 -0.1
493,867 + CSW01_02475 0.52 +0.2
493,867 + CSW01_02475 0.52 +0.9
493,867 + CSW01_02475 0.52 +0.3
493,867 + CSW01_02475 0.52 +0.6
493,867 + CSW01_02475 0.52 -0.2
493,874 + CSW01_02475 0.52 -0.1
493,875 - CSW01_02475 0.52 -1.7
493,875 - CSW01_02475 0.52 +0.7
493,875 - CSW01_02475 0.52 +1.8
493,875 - CSW01_02475 0.52 +0.0
493,875 - CSW01_02475 0.52 +1.7
493,875 - CSW01_02475 0.52 -1.3
493,875 - CSW01_02475 0.52 +0.1
493,875 - CSW01_02475 0.52 +0.7
493,875 - CSW01_02475 0.52 +0.1
493,875 - CSW01_02475 0.52 -0.3
493,875 - CSW01_02475 0.52 +0.1
493,882 + CSW01_02475 0.53 -0.4
493,890 - CSW01_02475 0.53 +1.0
493,890 - CSW01_02475 0.53 +0.2
493,890 - CSW01_02475 0.53 +0.8
493,890 - CSW01_02475 0.53 -0.9
493,947 - CSW01_02475 0.58 +0.4
494,019 + CSW01_02475 0.63 +0.6
494,045 - CSW01_02475 0.65 +1.2
494,051 + CSW01_02475 0.66 -0.3
494,141 - CSW01_02475 0.73 +0.5
494,143 + CSW01_02475 0.73 -0.0
494,155 + CSW01_02475 0.74 -0.2
494,159 + CSW01_02475 0.74 +0.1
494,216 - CSW01_02475 0.78 +0.5
494,266 + CSW01_02475 0.82 -0.5
494,311 + CSW01_02475 0.86 -1.2
494,316 + CSW01_02475 0.86 +0.4
494,316 + CSW01_02475 0.86 +0.3
494,326 + CSW01_02475 0.87 -0.6
494,399 + -0.5
494,413 + +0.1
494,418 + -0.0
494,493 - -0.2
494,515 - -0.7
494,542 - -0.2
495,068 + +0.6
495,068 + +0.8
495,068 + -1.5
495,071 - -1.2
495,100 - CSW01_02485 0.11 +0.1
495,157 - CSW01_02485 0.21 +0.0
495,160 + CSW01_02485 0.21 -1.0
495,211 + CSW01_02485 0.30 -0.4
495,255 + CSW01_02485 0.38 +0.1
495,255 + CSW01_02485 0.38 -0.0
495,263 - CSW01_02485 0.40 +0.5
495,263 - CSW01_02485 0.40 -0.2
495,305 - CSW01_02485 0.47 -0.1
495,331 - CSW01_02485 0.52 -0.2
495,350 - CSW01_02485 0.55 -0.1
495,487 - CSW01_02485 0.79 +0.3

Or see this region's nucleotide sequence