Experiment: LB_Aerobic_120MIN_ZN10B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01955 and CSW01_01960 are separated by 82 nucleotides CSW01_01960 and CSW01_01965 are separated by 284 nucleotides CSW01_01965 and CSW01_01970 are separated by 202 nucleotides
CSW01_01955: CSW01_01955 - alanine racemase, at 386,713 to 387,840
_01955
CSW01_01960: CSW01_01960 - hypothetical protein, at 387,923 to 388,342
_01960
CSW01_01965: CSW01_01965 - glucose-6-phosphate isomerase, at 388,627 to 390,279
_01965
CSW01_01970: CSW01_01970 - MBL fold metallo-hydrolase, at 390,482 to 391,660
_01970
Position (kb) 388
389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 387.834 kb on + strand at 387.844 kb on + strand at 387.844 kb on + strand at 387.844 kb on + strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.867 kb on - strand at 387.904 kb on + strand at 387.912 kb on - strand at 387.979 kb on + strand, within CSW01_01960 at 387.979 kb on + strand, within CSW01_01960 at 388.009 kb on + strand, within CSW01_01960 at 388.009 kb on + strand, within CSW01_01960 at 388.017 kb on - strand, within CSW01_01960 at 388.064 kb on + strand, within CSW01_01960 at 388.064 kb on - strand, within CSW01_01960 at 388.065 kb on - strand, within CSW01_01960 at 388.070 kb on - strand, within CSW01_01960 at 388.070 kb on - strand, within CSW01_01960 at 388.103 kb on - strand, within CSW01_01960 at 388.124 kb on + strand, within CSW01_01960 at 388.147 kb on - strand, within CSW01_01960 at 388.224 kb on - strand, within CSW01_01960 at 388.291 kb on + strand, within CSW01_01960 at 388.291 kb on + strand, within CSW01_01960 at 388.299 kb on - strand, within CSW01_01960 at 388.299 kb on - strand, within CSW01_01960 at 388.318 kb on + strand at 388.326 kb on - strand at 388.361 kb on - strand at 388.361 kb on - strand at 388.372 kb on + strand at 388.377 kb on + strand at 388.380 kb on - strand at 388.385 kb on - strand at 388.385 kb on - strand at 388.390 kb on + strand at 388.432 kb on + strand at 388.467 kb on - strand at 388.480 kb on + strand at 388.616 kb on + strand at 388.619 kb on - strand at 388.693 kb on + strand at 388.816 kb on + strand, within CSW01_01965 at 388.875 kb on + strand, within CSW01_01965 at 388.917 kb on + strand, within CSW01_01965 at 388.923 kb on - strand, within CSW01_01965 at 388.923 kb on - strand, within CSW01_01965 at 388.940 kb on - strand, within CSW01_01965 at 389.031 kb on + strand, within CSW01_01965 at 389.039 kb on - strand, within CSW01_01965 at 389.194 kb on - strand, within CSW01_01965 at 389.426 kb on + strand, within CSW01_01965 at 389.754 kb on + strand, within CSW01_01965 at 390.015 kb on + strand, within CSW01_01965 at 390.083 kb on - strand, within CSW01_01965 at 390.192 kb on + strand at 390.249 kb on + strand at 390.308 kb on + strand at 390.308 kb on + strand at 390.308 kb on + strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.393 kb on - strand at 390.454 kb on + strand at 390.454 kb on + strand at 390.463 kb on + strand at 390.477 kb on - strand at 390.526 kb on - strand at 390.526 kb on - strand at 390.553 kb on + strand at 390.556 kb on - strand at 390.556 kb on - strand at 390.574 kb on - strand at 390.591 kb on - strand at 390.601 kb on - strand, within CSW01_01970 at 390.614 kb on + strand, within CSW01_01970 at 390.629 kb on - strand, within CSW01_01970 at 390.665 kb on + strand, within CSW01_01970 at 390.665 kb on + strand, within CSW01_01970 at 390.665 kb on + strand, within CSW01_01970 at 390.673 kb on - strand, within CSW01_01970 at 390.694 kb on + strand, within CSW01_01970 at 390.707 kb on - strand, within CSW01_01970 at 390.772 kb on + strand, within CSW01_01970 at 390.794 kb on - strand, within CSW01_01970 at 390.812 kb on + strand, within CSW01_01970 at 390.813 kb on + strand, within CSW01_01970 at 390.829 kb on - strand, within CSW01_01970 at 390.853 kb on + strand, within CSW01_01970 at 390.861 kb on - strand, within CSW01_01970 at 390.960 kb on + strand, within CSW01_01970 at 390.960 kb on + strand, within CSW01_01970 at 390.968 kb on - strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.982 kb on + strand, within CSW01_01970 at 390.982 kb on + strand, within CSW01_01970 at 390.990 kb on - strand, within CSW01_01970 at 391.005 kb on + strand, within CSW01_01970 at 391.011 kb on + strand, within CSW01_01970 at 391.013 kb on - strand, within CSW01_01970 at 391.029 kb on - strand, within CSW01_01970 at 391.031 kb on - strand, within CSW01_01970 at 391.051 kb on + strand, within CSW01_01970 at 391.172 kb on + strand, within CSW01_01970 at 391.172 kb on + strand, within CSW01_01970 at 391.270 kb on - strand, within CSW01_01970
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B remove 387,834 + +1.7 387,844 + +1.9 387,844 + -0.2 387,844 + +2.5 387,852 - -0.4 387,852 - -0.1 387,852 - +0.1 387,852 - +0.2 387,852 - +0.3 387,852 - +1.8 387,852 - +0.1 387,867 - -0.2 387,904 + +2.3 387,912 - +0.4 387,979 + CSW01_01960 0.13 -2.1 387,979 + CSW01_01960 0.13 -0.1 388,009 + CSW01_01960 0.20 -0.4 388,009 + CSW01_01960 0.20 -1.2 388,017 - CSW01_01960 0.22 +0.4 388,064 + CSW01_01960 0.34 -0.7 388,064 - CSW01_01960 0.34 +0.1 388,065 - CSW01_01960 0.34 -0.5 388,070 - CSW01_01960 0.35 +0.1 388,070 - CSW01_01960 0.35 +0.7 388,103 - CSW01_01960 0.43 +0.6 388,124 + CSW01_01960 0.48 -0.7 388,147 - CSW01_01960 0.53 +0.3 388,224 - CSW01_01960 0.72 +0.6 388,291 + CSW01_01960 0.88 -0.2 388,291 + CSW01_01960 0.88 +2.0 388,299 - CSW01_01960 0.90 +0.3 388,299 - CSW01_01960 0.90 +0.1 388,318 + +0.1 388,326 - -0.4 388,361 - +0.0 388,361 - +0.6 388,372 + -0.3 388,377 + +2.3 388,380 - -0.3 388,385 - +1.0 388,385 - -0.3 388,390 + +0.8 388,432 + +0.7 388,467 - +0.6 388,480 + +0.7 388,616 + -1.1 388,619 - +1.9 388,693 + +0.3 388,816 + CSW01_01965 0.11 +0.3 388,875 + CSW01_01965 0.15 -1.2 388,917 + CSW01_01965 0.18 +0.3 388,923 - CSW01_01965 0.18 +1.9 388,923 - CSW01_01965 0.18 -1.7 388,940 - CSW01_01965 0.19 +1.3 389,031 + CSW01_01965 0.24 -2.5 389,039 - CSW01_01965 0.25 -0.7 389,194 - CSW01_01965 0.34 +0.3 389,426 + CSW01_01965 0.48 +0.3 389,754 + CSW01_01965 0.68 -0.7 390,015 + CSW01_01965 0.84 +0.3 390,083 - CSW01_01965 0.88 -1.2 390,192 + -1.2 390,249 + -1.7 390,308 + -0.3 390,308 + +1.2 390,308 + -0.1 390,316 - -0.8 390,316 - -0.5 390,316 - -0.2 390,316 - -0.4 390,316 - +0.3 390,316 - +1.2 390,316 - +1.3 390,316 - +0.0 390,316 - -1.5 390,393 - -0.2 390,454 + +0.6 390,454 + -0.5 390,463 + +1.2 390,477 - +2.4 390,526 - +0.5 390,526 - -1.2 390,553 + -0.1 390,556 - -3.0 390,556 - -0.4 390,574 - -0.0 390,591 - +0.4 390,601 - CSW01_01970 0.10 +1.5 390,614 + CSW01_01970 0.11 -0.1 390,629 - CSW01_01970 0.12 -0.0 390,665 + CSW01_01970 0.16 +0.6 390,665 + CSW01_01970 0.16 -0.5 390,665 + CSW01_01970 0.16 -2.1 390,673 - CSW01_01970 0.16 +1.9 390,694 + CSW01_01970 0.18 +0.1 390,707 - CSW01_01970 0.19 -0.2 390,772 + CSW01_01970 0.25 +0.5 390,794 - CSW01_01970 0.26 +1.5 390,812 + CSW01_01970 0.28 +0.5 390,813 + CSW01_01970 0.28 +0.3 390,829 - CSW01_01970 0.29 -0.4 390,853 + CSW01_01970 0.31 +0.6 390,861 - CSW01_01970 0.32 +0.3 390,960 + CSW01_01970 0.41 -0.0 390,960 + CSW01_01970 0.41 -0.5 390,968 - CSW01_01970 0.41 +0.0 390,970 + CSW01_01970 0.41 -0.3 390,970 + CSW01_01970 0.41 +0.2 390,970 + CSW01_01970 0.41 +0.7 390,970 + CSW01_01970 0.41 +0.1 390,978 - CSW01_01970 0.42 -0.9 390,978 - CSW01_01970 0.42 +0.1 390,978 - CSW01_01970 0.42 -0.3 390,978 - CSW01_01970 0.42 -0.3 390,978 - CSW01_01970 0.42 +0.0 390,982 + CSW01_01970 0.42 +0.3 390,982 + CSW01_01970 0.42 -0.7 390,990 - CSW01_01970 0.43 +0.1 391,005 + CSW01_01970 0.44 +0.5 391,011 + CSW01_01970 0.45 -0.1 391,013 - CSW01_01970 0.45 +1.3 391,029 - CSW01_01970 0.46 +1.3 391,031 - CSW01_01970 0.47 +1.3 391,051 + CSW01_01970 0.48 -0.5 391,172 + CSW01_01970 0.59 +0.2 391,172 + CSW01_01970 0.59 +0.3 391,270 - CSW01_01970 0.67 +1.6
Or see this region's nucleotide sequence