Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01090

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01080 and CSW01_01085 are separated by 26 nucleotidesCSW01_01085 and CSW01_01090 are separated by 42 nucleotidesCSW01_01090 and CSW01_01095 overlap by 19 nucleotidesCSW01_01095 and CSW01_01100 are separated by 30 nucleotides CSW01_01080: CSW01_01080 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 210,453 to 212,414 _01080 CSW01_01085: CSW01_01085 - MurR/RpiR family transcriptional regulator, at 212,441 to 213,289 _01085 CSW01_01090: CSW01_01090 - hypothetical protein, at 213,332 to 213,523 _01090 CSW01_01095: CSW01_01095 - N-acetylmuramic acid 6-phosphate etherase, at 213,505 to 214,422 _01095 CSW01_01100: CSW01_01100 - PTS N-acetylmuramic acid EIIBC component, at 214,453 to 215,898 _01100 Position (kb) 213 214Strain fitness (log2 ratio) -2 -1 0 1at 212.417 kb on - strandat 212.422 kb on + strandat 212.422 kb on + strandat 212.422 kb on + strandat 212.422 kb on + strandat 212.445 kb on - strandat 212.452 kb on + strandat 212.503 kb on - strandat 212.506 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.517 kb on - strandat 212.551 kb on - strand, within CSW01_01085at 212.579 kb on - strand, within CSW01_01085at 212.598 kb on + strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.664 kb on - strand, within CSW01_01085at 212.697 kb on - strand, within CSW01_01085at 212.746 kb on + strand, within CSW01_01085at 212.746 kb on + strand, within CSW01_01085at 212.754 kb on - strand, within CSW01_01085at 212.770 kb on - strand, within CSW01_01085at 212.787 kb on + strand, within CSW01_01085at 212.795 kb on - strand, within CSW01_01085at 212.809 kb on + strand, within CSW01_01085at 212.809 kb on + strand, within CSW01_01085at 212.820 kb on + strand, within CSW01_01085at 212.820 kb on + strand, within CSW01_01085at 212.828 kb on - strand, within CSW01_01085at 212.838 kb on - strand, within CSW01_01085at 212.857 kb on + strand, within CSW01_01085at 212.860 kb on - strand, within CSW01_01085at 212.865 kb on - strand, within CSW01_01085at 212.929 kb on + strand, within CSW01_01085at 212.970 kb on + strand, within CSW01_01085at 212.978 kb on - strand, within CSW01_01085at 213.018 kb on + strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.063 kb on + strand, within CSW01_01085at 213.098 kb on + strand, within CSW01_01085at 213.149 kb on + strand, within CSW01_01085at 213.189 kb on + strand, within CSW01_01085at 213.280 kb on - strandat 213.523 kb on - strandat 213.523 kb on - strandat 213.554 kb on + strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.576 kb on + strandat 213.576 kb on + strandat 213.695 kb on - strand, within CSW01_01095at 213.762 kb on + strand, within CSW01_01095at 213.792 kb on + strand, within CSW01_01095at 213.792 kb on - strand, within CSW01_01095at 213.802 kb on + strand, within CSW01_01095at 213.814 kb on + strand, within CSW01_01095at 213.827 kb on - strand, within CSW01_01095at 213.878 kb on + strand, within CSW01_01095at 213.891 kb on - strand, within CSW01_01095at 213.925 kb on + strand, within CSW01_01095at 213.929 kb on - strand, within CSW01_01095at 213.930 kb on + strand, within CSW01_01095at 213.950 kb on + strand, within CSW01_01095at 213.973 kb on + strand, within CSW01_01095at 213.974 kb on - strand, within CSW01_01095at 213.981 kb on - strand, within CSW01_01095at 213.990 kb on + strand, within CSW01_01095at 213.994 kb on + strand, within CSW01_01095at 213.996 kb on - strand, within CSW01_01095at 214.002 kb on - strand, within CSW01_01095at 214.017 kb on - strand, within CSW01_01095at 214.027 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.180 kb on + strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.203 kb on + strand, within CSW01_01095at 214.215 kb on - strand, within CSW01_01095at 214.245 kb on + strand, within CSW01_01095at 214.264 kb on + strand, within CSW01_01095at 214.314 kb on + strand, within CSW01_01095at 214.314 kb on + strand, within CSW01_01095at 214.322 kb on - strand, within CSW01_01095at 214.347 kb on + strandat 214.347 kb on + strandat 214.352 kb on + strandat 214.355 kb on - strandat 214.355 kb on - strandat 214.355 kb on - strandat 214.357 kb on + strandat 214.365 kb on - strandat 214.365 kb on - strandat 214.383 kb on + strandat 214.390 kb on + strandat 214.390 kb on + strandat 214.390 kb on + strandat 214.391 kb on - strandat 214.398 kb on - strandat 214.398 kb on - strandat 214.398 kb on - strandat 214.440 kb on - strandat 214.486 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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212,417 - +0.3
212,422 + +0.0
212,422 + -0.2
212,422 + -0.3
212,422 + +0.1
212,445 - +0.7
212,452 + -0.6
212,503 - +0.0
212,506 + +0.5
212,509 + +0.2
212,509 + +0.0
212,509 + -0.4
212,509 + +0.3
212,517 - -0.6
212,551 - CSW01_01085 0.13 +0.0
212,579 - CSW01_01085 0.16 +0.0
212,598 + CSW01_01085 0.18 +1.0
212,606 - CSW01_01085 0.19 -0.2
212,606 - CSW01_01085 0.19 -0.2
212,606 - CSW01_01085 0.19 -0.4
212,664 - CSW01_01085 0.26 +0.5
212,697 - CSW01_01085 0.30 +0.2
212,746 + CSW01_01085 0.36 +0.3
212,746 + CSW01_01085 0.36 +1.5
212,754 - CSW01_01085 0.37 +0.6
212,770 - CSW01_01085 0.39 +0.8
212,787 + CSW01_01085 0.41 +0.2
212,795 - CSW01_01085 0.42 +0.7
212,809 + CSW01_01085 0.43 -0.1
212,809 + CSW01_01085 0.43 -0.2
212,820 + CSW01_01085 0.45 -0.0
212,820 + CSW01_01085 0.45 +0.1
212,828 - CSW01_01085 0.46 +0.2
212,838 - CSW01_01085 0.47 -0.1
212,857 + CSW01_01085 0.49 +1.5
212,860 - CSW01_01085 0.49 -0.1
212,865 - CSW01_01085 0.50 -0.5
212,929 + CSW01_01085 0.57 +1.1
212,970 + CSW01_01085 0.62 +0.9
212,978 - CSW01_01085 0.63 +1.7
213,018 + CSW01_01085 0.68 -0.4
213,040 - CSW01_01085 0.71 -0.3
213,040 - CSW01_01085 0.71 -0.3
213,040 - CSW01_01085 0.71 +1.2
213,063 + CSW01_01085 0.73 -0.1
213,098 + CSW01_01085 0.77 -0.5
213,149 + CSW01_01085 0.83 -0.6
213,189 + CSW01_01085 0.88 +0.2
213,280 - +0.7
213,523 - -0.3
213,523 - -0.6
213,554 + -0.5
213,562 - -0.7
213,562 - +0.2
213,562 - +0.7
213,576 + -0.2
213,576 + +0.3
213,695 - CSW01_01095 0.21 +0.7
213,762 + CSW01_01095 0.28 +0.5
213,792 + CSW01_01095 0.31 -0.2
213,792 - CSW01_01095 0.31 +0.3
213,802 + CSW01_01095 0.32 -0.1
213,814 + CSW01_01095 0.34 -0.7
213,827 - CSW01_01095 0.35 -0.4
213,878 + CSW01_01095 0.41 +0.0
213,891 - CSW01_01095 0.42 -0.4
213,925 + CSW01_01095 0.46 -0.0
213,929 - CSW01_01095 0.46 +1.5
213,930 + CSW01_01095 0.46 +1.7
213,950 + CSW01_01095 0.48 -0.2
213,973 + CSW01_01095 0.51 -0.6
213,974 - CSW01_01095 0.51 -0.3
213,981 - CSW01_01095 0.52 +1.1
213,990 + CSW01_01095 0.53 -1.0
213,994 + CSW01_01095 0.53 -0.9
213,996 - CSW01_01095 0.53 +0.2
214,002 - CSW01_01095 0.54 +0.6
214,017 - CSW01_01095 0.56 -0.1
214,027 - CSW01_01095 0.57 +0.1
214,052 - CSW01_01095 0.60 +0.2
214,052 - CSW01_01095 0.60 -0.2
214,180 + CSW01_01095 0.74 -0.5
214,188 - CSW01_01095 0.74 -0.3
214,188 - CSW01_01095 0.74 -0.3
214,203 + CSW01_01095 0.76 -0.3
214,215 - CSW01_01095 0.77 -0.6
214,245 + CSW01_01095 0.81 -0.6
214,264 + CSW01_01095 0.83 -0.1
214,314 + CSW01_01095 0.88 -0.9
214,314 + CSW01_01095 0.88 -0.4
214,322 - CSW01_01095 0.89 +0.5
214,347 + -0.5
214,347 + -2.0
214,352 + -0.7
214,355 - -0.0
214,355 - -0.3
214,355 - -0.0
214,357 + -1.0
214,365 - -0.3
214,365 - -0.5
214,383 + +0.8
214,390 + -0.7
214,390 + -0.9
214,390 + +0.8
214,391 - +0.1
214,398 - +0.4
214,398 - -0.6
214,398 - +0.5
214,440 - +0.1
214,486 + -0.1

Or see this region's nucleotide sequence