Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00335

Experiment: LB_Aerobic_120MIN_ZN10B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00320 and CSW01_00325 are separated by 29 nucleotidesCSW01_00325 and CSW01_00330 are separated by 232 nucleotidesCSW01_00330 and CSW01_00335 are separated by 251 nucleotidesCSW01_00335 and CSW01_00340 are separated by 3 nucleotides CSW01_00320: CSW01_00320 - tRNA-Asp, at 58,942 to 59,018 _00320 CSW01_00325: CSW01_00325 - tRNA-Trp, at 59,048 to 59,124 _00325 CSW01_00330: CSW01_00330 - fluoride efflux transporter CrcB, at 59,357 to 59,737 _00330 CSW01_00335: CSW01_00335 - phosphomethylpyrimidine synthase, at 59,989 to 61,926 _00335 CSW01_00340: CSW01_00340 - thiamine phosphate synthase, at 61,930 to 63,252 _00340 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 59.285 kb on - strandat 59.313 kb on - strandat 59.384 kb on + strandat 59.384 kb on + strandat 59.384 kb on + strandat 59.538 kb on + strand, within CSW01_00330at 59.539 kb on + strand, within CSW01_00330at 59.539 kb on + strand, within CSW01_00330at 59.544 kb on + strand, within CSW01_00330at 59.547 kb on - strand, within CSW01_00330at 59.552 kb on - strand, within CSW01_00330at 59.682 kb on - strand, within CSW01_00330at 59.847 kb on + strandat 59.852 kb on + strandat 59.860 kb on - strandat 59.883 kb on - strandat 59.893 kb on - strandat 59.910 kb on - strandat 59.914 kb on + strandat 59.989 kb on + strandat 60.046 kb on + strandat 60.046 kb on + strandat 60.175 kb on - strandat 60.193 kb on + strand, within CSW01_00335at 60.223 kb on - strand, within CSW01_00335at 60.237 kb on - strand, within CSW01_00335at 60.261 kb on + strand, within CSW01_00335at 60.269 kb on - strand, within CSW01_00335at 60.269 kb on - strand, within CSW01_00335at 60.269 kb on - strand, within CSW01_00335at 60.275 kb on + strand, within CSW01_00335at 60.283 kb on - strand, within CSW01_00335at 60.285 kb on - strand, within CSW01_00335at 60.294 kb on - strand, within CSW01_00335at 60.322 kb on + strand, within CSW01_00335at 60.352 kb on + strand, within CSW01_00335at 60.361 kb on - strand, within CSW01_00335at 60.408 kb on + strand, within CSW01_00335at 60.408 kb on + strand, within CSW01_00335at 60.408 kb on + strand, within CSW01_00335at 60.413 kb on + strand, within CSW01_00335at 60.431 kb on + strand, within CSW01_00335at 60.441 kb on + strand, within CSW01_00335at 60.444 kb on - strand, within CSW01_00335at 60.479 kb on + strand, within CSW01_00335at 60.508 kb on + strand, within CSW01_00335at 60.580 kb on - strand, within CSW01_00335at 60.596 kb on + strand, within CSW01_00335at 60.598 kb on + strand, within CSW01_00335at 60.606 kb on - strand, within CSW01_00335at 60.634 kb on - strand, within CSW01_00335at 60.634 kb on - strand, within CSW01_00335at 60.651 kb on + strand, within CSW01_00335at 60.682 kb on - strand, within CSW01_00335at 60.689 kb on - strand, within CSW01_00335at 60.689 kb on - strand, within CSW01_00335at 60.701 kb on + strand, within CSW01_00335at 60.710 kb on - strand, within CSW01_00335at 60.783 kb on + strand, within CSW01_00335at 60.791 kb on - strand, within CSW01_00335at 60.831 kb on + strand, within CSW01_00335at 60.839 kb on - strand, within CSW01_00335at 60.850 kb on - strand, within CSW01_00335at 60.908 kb on + strand, within CSW01_00335at 60.911 kb on - strand, within CSW01_00335at 60.953 kb on + strand, within CSW01_00335at 61.074 kb on - strand, within CSW01_00335at 61.154 kb on + strand, within CSW01_00335at 61.161 kb on + strand, within CSW01_00335at 61.162 kb on - strand, within CSW01_00335at 61.210 kb on + strand, within CSW01_00335at 61.220 kb on - strand, within CSW01_00335at 61.222 kb on - strand, within CSW01_00335at 61.228 kb on - strand, within CSW01_00335at 61.228 kb on - strand, within CSW01_00335at 61.233 kb on + strand, within CSW01_00335at 61.241 kb on - strand, within CSW01_00335at 61.243 kb on - strand, within CSW01_00335at 61.258 kb on + strand, within CSW01_00335at 61.277 kb on - strand, within CSW01_00335at 61.291 kb on + strand, within CSW01_00335at 61.298 kb on - strand, within CSW01_00335at 61.299 kb on - strand, within CSW01_00335at 61.326 kb on + strand, within CSW01_00335at 61.326 kb on + strand, within CSW01_00335at 61.334 kb on - strand, within CSW01_00335at 61.334 kb on - strand, within CSW01_00335at 61.337 kb on + strand, within CSW01_00335at 61.387 kb on - strand, within CSW01_00335at 61.392 kb on - strand, within CSW01_00335at 61.447 kb on + strand, within CSW01_00335at 61.453 kb on - strand, within CSW01_00335at 61.455 kb on + strand, within CSW01_00335at 61.455 kb on - strand, within CSW01_00335at 61.468 kb on - strand, within CSW01_00335at 61.563 kb on + strand, within CSW01_00335at 61.581 kb on - strand, within CSW01_00335at 61.632 kb on + strand, within CSW01_00335at 61.632 kb on + strand, within CSW01_00335at 61.640 kb on - strand, within CSW01_00335at 61.654 kb on + strand, within CSW01_00335at 61.683 kb on - strand, within CSW01_00335at 61.713 kb on + strand, within CSW01_00335at 61.713 kb on + strand, within CSW01_00335at 61.713 kb on + strand, within CSW01_00335at 61.713 kb on + strand, within CSW01_00335at 61.721 kb on - strand, within CSW01_00335at 61.721 kb on - strand, within CSW01_00335at 61.721 kb on - strand, within CSW01_00335at 61.723 kb on + strand, within CSW01_00335at 61.772 kb on - strandat 61.790 kb on + strandat 61.790 kb on + strandat 61.815 kb on + strandat 61.890 kb on + strandat 61.890 kb on + strandat 61.935 kb on - strandat 61.963 kb on + strandat 61.990 kb on + strandat 62.000 kb on - strandat 62.000 kb on - strandat 62.005 kb on + strandat 62.028 kb on - strandat 62.033 kb on + strandat 62.123 kb on + strand, within CSW01_00340at 62.123 kb on + strand, within CSW01_00340at 62.131 kb on - strand, within CSW01_00340at 62.148 kb on + strand, within CSW01_00340at 62.149 kb on + strand, within CSW01_00340at 62.157 kb on - strand, within CSW01_00340at 62.178 kb on - strand, within CSW01_00340at 62.190 kb on + strand, within CSW01_00340at 62.190 kb on + strand, within CSW01_00340at 62.190 kb on + strand, within CSW01_00340at 62.211 kb on + strand, within CSW01_00340at 62.213 kb on + strand, within CSW01_00340at 62.213 kb on + strand, within CSW01_00340at 62.213 kb on + strand, within CSW01_00340at 62.213 kb on + strand, within CSW01_00340at 62.219 kb on - strand, within CSW01_00340at 62.221 kb on - strand, within CSW01_00340at 62.221 kb on - strand, within CSW01_00340at 62.221 kb on - strand, within CSW01_00340at 62.221 kb on - strand, within CSW01_00340at 62.221 kb on - strand, within CSW01_00340at 62.221 kb on - strand, within CSW01_00340at 62.255 kb on - strand, within CSW01_00340at 62.288 kb on - strand, within CSW01_00340at 62.353 kb on + strand, within CSW01_00340at 62.413 kb on + strand, within CSW01_00340at 62.418 kb on + strand, within CSW01_00340at 62.436 kb on + strand, within CSW01_00340at 62.449 kb on - strand, within CSW01_00340at 62.468 kb on - strand, within CSW01_00340at 62.497 kb on + strand, within CSW01_00340at 62.522 kb on - strand, within CSW01_00340at 62.577 kb on + strand, within CSW01_00340at 62.609 kb on - strand, within CSW01_00340at 62.614 kb on - strand, within CSW01_00340at 62.615 kb on + strand, within CSW01_00340at 62.615 kb on - strand, within CSW01_00340at 62.636 kb on + strand, within CSW01_00340at 62.636 kb on + strand, within CSW01_00340at 62.636 kb on + strand, within CSW01_00340at 62.649 kb on - strand, within CSW01_00340at 62.664 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.748 kb on + strand, within CSW01_00340at 62.750 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.756 kb on - strand, within CSW01_00340at 62.764 kb on - strand, within CSW01_00340at 62.784 kb on - strand, within CSW01_00340at 62.784 kb on - strand, within CSW01_00340at 62.784 kb on - strand, within CSW01_00340at 62.784 kb on - strand, within CSW01_00340at 62.843 kb on + strand, within CSW01_00340at 62.843 kb on + strand, within CSW01_00340at 62.915 kb on + strand, within CSW01_00340

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_120MIN_ZN10B
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59,285 - -0.2
59,313 - -0.0
59,384 + +0.7
59,384 + -0.1
59,384 + -0.4
59,538 + CSW01_00330 0.48 -1.3
59,539 + CSW01_00330 0.48 +0.8
59,539 + CSW01_00330 0.48 -0.5
59,544 + CSW01_00330 0.49 -1.0
59,547 - CSW01_00330 0.50 -0.4
59,552 - CSW01_00330 0.51 +0.1
59,682 - CSW01_00330 0.85 +0.1
59,847 + -0.8
59,852 + +0.2
59,860 - -0.2
59,883 - +0.8
59,893 - -0.0
59,910 - -0.1
59,914 + -0.1
59,989 + +0.5
60,046 + +0.1
60,046 + +0.1
60,175 - +0.1
60,193 + CSW01_00335 0.11 -0.0
60,223 - CSW01_00335 0.12 +0.3
60,237 - CSW01_00335 0.13 -0.1
60,261 + CSW01_00335 0.14 -0.1
60,269 - CSW01_00335 0.14 -0.1
60,269 - CSW01_00335 0.14 -0.0
60,269 - CSW01_00335 0.14 +0.2
60,275 + CSW01_00335 0.15 -0.1
60,283 - CSW01_00335 0.15 -1.1
60,285 - CSW01_00335 0.15 -0.1
60,294 - CSW01_00335 0.16 +1.1
60,322 + CSW01_00335 0.17 +0.0
60,352 + CSW01_00335 0.19 -0.2
60,361 - CSW01_00335 0.19 +0.3
60,408 + CSW01_00335 0.22 -0.2
60,408 + CSW01_00335 0.22 +0.4
60,408 + CSW01_00335 0.22 +0.9
60,413 + CSW01_00335 0.22 -0.7
60,431 + CSW01_00335 0.23 -0.3
60,441 + CSW01_00335 0.23 +0.2
60,444 - CSW01_00335 0.23 -0.1
60,479 + CSW01_00335 0.25 -0.8
60,508 + CSW01_00335 0.27 -0.6
60,580 - CSW01_00335 0.30 -0.2
60,596 + CSW01_00335 0.31 -0.5
60,598 + CSW01_00335 0.31 +0.0
60,606 - CSW01_00335 0.32 -0.3
60,634 - CSW01_00335 0.33 -0.1
60,634 - CSW01_00335 0.33 +0.0
60,651 + CSW01_00335 0.34 -0.2
60,682 - CSW01_00335 0.36 -0.3
60,689 - CSW01_00335 0.36 -0.2
60,689 - CSW01_00335 0.36 -0.4
60,701 + CSW01_00335 0.37 +0.3
60,710 - CSW01_00335 0.37 +0.3
60,783 + CSW01_00335 0.41 +0.1
60,791 - CSW01_00335 0.41 -0.4
60,831 + CSW01_00335 0.43 +0.2
60,839 - CSW01_00335 0.44 +1.0
60,850 - CSW01_00335 0.44 +0.2
60,908 + CSW01_00335 0.47 +0.4
60,911 - CSW01_00335 0.48 -0.1
60,953 + CSW01_00335 0.50 -0.6
61,074 - CSW01_00335 0.56 -0.4
61,154 + CSW01_00335 0.60 +0.2
61,161 + CSW01_00335 0.60 -0.2
61,162 - CSW01_00335 0.61 -0.7
61,210 + CSW01_00335 0.63 +0.2
61,220 - CSW01_00335 0.64 -0.3
61,222 - CSW01_00335 0.64 -0.2
61,228 - CSW01_00335 0.64 +0.3
61,228 - CSW01_00335 0.64 -1.1
61,233 + CSW01_00335 0.64 -0.1
61,241 - CSW01_00335 0.65 -0.1
61,243 - CSW01_00335 0.65 -0.3
61,258 + CSW01_00335 0.65 +0.1
61,277 - CSW01_00335 0.66 +0.1
61,291 + CSW01_00335 0.67 -1.3
61,298 - CSW01_00335 0.68 +0.1
61,299 - CSW01_00335 0.68 +0.1
61,326 + CSW01_00335 0.69 -0.5
61,326 + CSW01_00335 0.69 +0.9
61,334 - CSW01_00335 0.69 +0.2
61,334 - CSW01_00335 0.69 -0.6
61,337 + CSW01_00335 0.70 -0.7
61,387 - CSW01_00335 0.72 -0.2
61,392 - CSW01_00335 0.72 +0.3
61,447 + CSW01_00335 0.75 -0.2
61,453 - CSW01_00335 0.76 +0.3
61,455 + CSW01_00335 0.76 +0.3
61,455 - CSW01_00335 0.76 -0.9
61,468 - CSW01_00335 0.76 +1.5
61,563 + CSW01_00335 0.81 +0.5
61,581 - CSW01_00335 0.82 +0.2
61,632 + CSW01_00335 0.85 -0.8
61,632 + CSW01_00335 0.85 +0.0
61,640 - CSW01_00335 0.85 -2.3
61,654 + CSW01_00335 0.86 -0.3
61,683 - CSW01_00335 0.87 -0.4
61,713 + CSW01_00335 0.89 -0.1
61,713 + CSW01_00335 0.89 +0.4
61,713 + CSW01_00335 0.89 -0.1
61,713 + CSW01_00335 0.89 -1.8
61,721 - CSW01_00335 0.89 -0.3
61,721 - CSW01_00335 0.89 +0.1
61,721 - CSW01_00335 0.89 +0.8
61,723 + CSW01_00335 0.89 +0.6
61,772 - -0.5
61,790 + -1.1
61,790 + -0.4
61,815 + -0.9
61,890 + +0.3
61,890 + +0.2
61,935 - -1.2
61,963 + -1.1
61,990 + -0.5
62,000 - -0.2
62,000 - -0.7
62,005 + -0.5
62,028 - -0.5
62,033 + -0.5
62,123 + CSW01_00340 0.15 +0.0
62,123 + CSW01_00340 0.15 +0.9
62,131 - CSW01_00340 0.15 +0.6
62,148 + CSW01_00340 0.16 +0.5
62,149 + CSW01_00340 0.17 +0.8
62,157 - CSW01_00340 0.17 +0.4
62,178 - CSW01_00340 0.19 -0.3
62,190 + CSW01_00340 0.20 -1.5
62,190 + CSW01_00340 0.20 -0.2
62,190 + CSW01_00340 0.20 -0.4
62,211 + CSW01_00340 0.21 -0.1
62,213 + CSW01_00340 0.21 +0.7
62,213 + CSW01_00340 0.21 +1.0
62,213 + CSW01_00340 0.21 +1.9
62,213 + CSW01_00340 0.21 +0.3
62,219 - CSW01_00340 0.22 -0.8
62,221 - CSW01_00340 0.22 +0.3
62,221 - CSW01_00340 0.22 +1.3
62,221 - CSW01_00340 0.22 +0.9
62,221 - CSW01_00340 0.22 -1.3
62,221 - CSW01_00340 0.22 +0.1
62,221 - CSW01_00340 0.22 +0.1
62,255 - CSW01_00340 0.25 -0.1
62,288 - CSW01_00340 0.27 -0.7
62,353 + CSW01_00340 0.32 -0.3
62,413 + CSW01_00340 0.37 -0.2
62,418 + CSW01_00340 0.37 -0.2
62,436 + CSW01_00340 0.38 -0.4
62,449 - CSW01_00340 0.39 -0.6
62,468 - CSW01_00340 0.41 +0.5
62,497 + CSW01_00340 0.43 -0.1
62,522 - CSW01_00340 0.45 -0.1
62,577 + CSW01_00340 0.49 -1.3
62,609 - CSW01_00340 0.51 -0.0
62,614 - CSW01_00340 0.52 +0.7
62,615 + CSW01_00340 0.52 +0.1
62,615 - CSW01_00340 0.52 -0.5
62,636 + CSW01_00340 0.53 -0.2
62,636 + CSW01_00340 0.53 -0.3
62,636 + CSW01_00340 0.53 -0.4
62,649 - CSW01_00340 0.54 +0.3
62,664 + CSW01_00340 0.55 +0.0
62,748 + CSW01_00340 0.62 +0.1
62,748 + CSW01_00340 0.62 -0.2
62,748 + CSW01_00340 0.62 -0.4
62,748 + CSW01_00340 0.62 -0.4
62,748 + CSW01_00340 0.62 +0.1
62,748 + CSW01_00340 0.62 +0.4
62,748 + CSW01_00340 0.62 -0.1
62,748 + CSW01_00340 0.62 +0.1
62,748 + CSW01_00340 0.62 +0.1
62,748 + CSW01_00340 0.62 -0.6
62,748 + CSW01_00340 0.62 -0.2
62,748 + CSW01_00340 0.62 +0.0
62,748 + CSW01_00340 0.62 +0.0
62,748 + CSW01_00340 0.62 +0.1
62,748 + CSW01_00340 0.62 +0.1
62,748 + CSW01_00340 0.62 -0.7
62,748 + CSW01_00340 0.62 +0.1
62,748 + CSW01_00340 0.62 -1.0
62,748 + CSW01_00340 0.62 +0.5
62,748 + CSW01_00340 0.62 +0.5
62,748 + CSW01_00340 0.62 -1.5
62,748 + CSW01_00340 0.62 +0.4
62,748 + CSW01_00340 0.62 +0.6
62,748 + CSW01_00340 0.62 -0.9
62,748 + CSW01_00340 0.62 -0.1
62,748 + CSW01_00340 0.62 +0.2
62,748 + CSW01_00340 0.62 +0.5
62,748 + CSW01_00340 0.62 +0.6
62,750 - CSW01_00340 0.62 -0.0
62,756 - CSW01_00340 0.62 +0.3
62,756 - CSW01_00340 0.62 -0.4
62,756 - CSW01_00340 0.62 +0.5
62,756 - CSW01_00340 0.62 +0.7
62,756 - CSW01_00340 0.62 +0.4
62,756 - CSW01_00340 0.62 -0.3
62,756 - CSW01_00340 0.62 -0.7
62,756 - CSW01_00340 0.62 -0.6
62,756 - CSW01_00340 0.62 -2.2
62,756 - CSW01_00340 0.62 +1.4
62,756 - CSW01_00340 0.62 -0.4
62,756 - CSW01_00340 0.62 +0.7
62,756 - CSW01_00340 0.62 -1.2
62,756 - CSW01_00340 0.62 +0.5
62,756 - CSW01_00340 0.62 -0.1
62,756 - CSW01_00340 0.62 -0.6
62,756 - CSW01_00340 0.62 -1.8
62,756 - CSW01_00340 0.62 -0.9
62,756 - CSW01_00340 0.62 -0.2
62,764 - CSW01_00340 0.63 +0.2
62,784 - CSW01_00340 0.65 +0.8
62,784 - CSW01_00340 0.65 +0.1
62,784 - CSW01_00340 0.65 +1.0
62,784 - CSW01_00340 0.65 -0.3
62,843 + CSW01_00340 0.69 -0.0
62,843 + CSW01_00340 0.69 +0.7
62,915 + CSW01_00340 0.74 -0.3

Or see this region's nucleotide sequence