Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28085

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28080 and AO356_28085 are separated by 27 nucleotidesAO356_28085 and AO356_28090 overlap by 4 nucleotidesAO356_28090 and AO356_28095 overlap by 4 nucleotides AO356_28080: AO356_28080 - branched-chain amino acid ABC transporter substrate-binding protein, at 6,411,441 to 6,412,607 _28080 AO356_28085: AO356_28085 - hypothetical protein, at 6,412,635 to 6,413,624 _28085 AO356_28090: AO356_28090 - ABC transporter ATP-binding protein, at 6,413,621 to 6,414,352 _28090 AO356_28095: AO356_28095 - multidrug ABC transporter permease, at 6,414,349 to 6,415,140 _28095 Position (kb) 6412 6413 6414Strain fitness (log2 ratio) -1 0 1 2at 6411.988 kb on - strand, within AO356_28080at 6412.120 kb on - strand, within AO356_28080at 6412.165 kb on - strand, within AO356_28080at 6412.251 kb on + strand, within AO356_28080at 6412.452 kb on + strand, within AO356_28080at 6412.474 kb on + strand, within AO356_28080at 6412.474 kb on + strand, within AO356_28080at 6412.573 kb on - strandat 6412.801 kb on + strand, within AO356_28085at 6412.857 kb on + strand, within AO356_28085at 6412.857 kb on + strand, within AO356_28085at 6412.857 kb on + strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.858 kb on - strand, within AO356_28085at 6412.928 kb on - strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.983 kb on + strand, within AO356_28085at 6412.984 kb on - strand, within AO356_28085at 6412.984 kb on - strand, within AO356_28085at 6413.777 kb on + strand, within AO356_28090at 6414.514 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.523 kb on + strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.524 kb on - strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.541 kb on + strand, within AO356_28095at 6414.542 kb on - strand, within AO356_28095at 6414.542 kb on - strand, within AO356_28095at 6414.542 kb on - strand, within AO356_28095

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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6,411,988 - AO356_28080 0.47 +0.4
6,412,120 - AO356_28080 0.58 +1.2
6,412,165 - AO356_28080 0.62 +0.7
6,412,251 + AO356_28080 0.69 +0.1
6,412,452 + AO356_28080 0.87 +0.6
6,412,474 + AO356_28080 0.89 -0.4
6,412,474 + AO356_28080 0.89 +0.6
6,412,573 - +1.2
6,412,801 + AO356_28085 0.17 +1.2
6,412,857 + AO356_28085 0.22 +1.5
6,412,857 + AO356_28085 0.22 +1.2
6,412,857 + AO356_28085 0.22 +1.2
6,412,858 - AO356_28085 0.23 +0.7
6,412,858 - AO356_28085 0.23 +0.5
6,412,858 - AO356_28085 0.23 +0.7
6,412,858 - AO356_28085 0.23 +0.8
6,412,928 - AO356_28085 0.30 +1.9
6,412,983 + AO356_28085 0.35 +1.2
6,412,983 + AO356_28085 0.35 +0.2
6,412,983 + AO356_28085 0.35 +0.6
6,412,983 + AO356_28085 0.35 +1.0
6,412,984 - AO356_28085 0.35 +1.1
6,412,984 - AO356_28085 0.35 +1.1
6,413,777 + AO356_28090 0.21 +1.2
6,414,514 + AO356_28095 0.21 +1.3
6,414,523 + AO356_28095 0.22 +1.0
6,414,523 + AO356_28095 0.22 +0.8
6,414,523 + AO356_28095 0.22 +1.6
6,414,523 + AO356_28095 0.22 +1.1
6,414,523 + AO356_28095 0.22 +0.1
6,414,524 - AO356_28095 0.22 +0.4
6,414,524 - AO356_28095 0.22 +1.1
6,414,524 - AO356_28095 0.22 +1.4
6,414,524 - AO356_28095 0.22 +0.2
6,414,524 - AO356_28095 0.22 +0.1
6,414,524 - AO356_28095 0.22 +0.7
6,414,524 - AO356_28095 0.22 +1.1
6,414,541 + AO356_28095 0.24 -0.5
6,414,541 + AO356_28095 0.24 +0.8
6,414,541 + AO356_28095 0.24 +0.6
6,414,541 + AO356_28095 0.24 +0.1
6,414,542 - AO356_28095 0.24 +1.4
6,414,542 - AO356_28095 0.24 +0.2
6,414,542 - AO356_28095 0.24 +1.1

Or see this region's nucleotide sequence