Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21820 and AO356_21825 are separated by 324 nucleotides AO356_21825 and AO356_21830 are separated by 96 nucleotides AO356_21830 and AO356_21835 are separated by 347 nucleotides
AO356_21820: AO356_21820 - DNA polymerase, at 4,882,529 to 4,885,606
_21820
AO356_21825: AO356_21825 - histidine kinase, at 4,885,931 to 4,887,994
_21825
AO356_21830: AO356_21830 - hypothetical protein, at 4,888,091 to 4,888,372
_21830
AO356_21835: AO356_21835 - glyoxalase, at 4,888,720 to 4,889,103
_21835
Position (kb) 4885
4886
4887
4888 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4885.686 kb on + strand at 4885.687 kb on - strand at 4885.687 kb on - strand at 4886.081 kb on + strand at 4886.082 kb on - strand at 4886.082 kb on - strand at 4886.123 kb on + strand at 4886.282 kb on + strand, within AO356_21825 at 4886.282 kb on + strand, within AO356_21825 at 4886.282 kb on + strand, within AO356_21825 at 4886.283 kb on - strand, within AO356_21825 at 4886.285 kb on + strand, within AO356_21825 at 4886.285 kb on + strand, within AO356_21825 at 4886.519 kb on + strand, within AO356_21825 at 4886.639 kb on + strand, within AO356_21825 at 4886.639 kb on + strand, within AO356_21825 at 4886.640 kb on - strand, within AO356_21825 at 4886.926 kb on + strand, within AO356_21825 at 4887.101 kb on + strand, within AO356_21825 at 4887.102 kb on - strand, within AO356_21825 at 4887.119 kb on + strand, within AO356_21825 at 4887.119 kb on + strand, within AO356_21825 at 4887.120 kb on - strand, within AO356_21825 at 4887.359 kb on + strand, within AO356_21825 at 4887.360 kb on - strand, within AO356_21825 at 4887.360 kb on - strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4888.006 kb on + strand at 4888.006 kb on + strand at 4888.007 kb on - strand at 4888.370 kb on + strand at 4888.370 kb on + strand at 4888.616 kb on + strand at 4888.616 kb on + strand at 4888.722 kb on - strand at 4888.722 kb on - strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.776 kb on - strand, within AO356_21835
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 4,885,686 + +0.1 4,885,687 - -0.2 4,885,687 - -1.2 4,886,081 + -0.1 4,886,082 - +0.8 4,886,082 - +0.4 4,886,123 + -0.3 4,886,282 + AO356_21825 0.17 -0.4 4,886,282 + AO356_21825 0.17 +0.4 4,886,282 + AO356_21825 0.17 +0.1 4,886,283 - AO356_21825 0.17 +0.3 4,886,285 + AO356_21825 0.17 +0.4 4,886,285 + AO356_21825 0.17 +0.1 4,886,519 + AO356_21825 0.28 -0.0 4,886,639 + AO356_21825 0.34 +0.7 4,886,639 + AO356_21825 0.34 +0.1 4,886,640 - AO356_21825 0.34 +0.0 4,886,926 + AO356_21825 0.48 -0.3 4,887,101 + AO356_21825 0.57 -0.3 4,887,102 - AO356_21825 0.57 +2.4 4,887,119 + AO356_21825 0.58 -0.6 4,887,119 + AO356_21825 0.58 -0.3 4,887,120 - AO356_21825 0.58 -0.6 4,887,359 + AO356_21825 0.69 +0.1 4,887,360 - AO356_21825 0.69 -0.0 4,887,360 - AO356_21825 0.69 +2.1 4,887,560 + AO356_21825 0.79 +0.3 4,887,560 + AO356_21825 0.79 +0.9 4,887,560 + AO356_21825 0.79 +0.6 4,887,561 - AO356_21825 0.79 +0.5 4,887,561 - AO356_21825 0.79 -0.2 4,887,561 - AO356_21825 0.79 +0.6 4,887,561 - AO356_21825 0.79 -0.1 4,887,789 + -0.8 4,887,789 + +1.0 4,887,789 + -0.2 4,887,790 - +0.5 4,887,790 - +0.0 4,887,790 - -0.8 4,887,790 - +0.3 4,887,790 - +0.1 4,888,006 + -0.7 4,888,006 + +0.1 4,888,007 - -0.0 4,888,370 + +0.2 4,888,370 + -0.9 4,888,616 + +0.6 4,888,616 + -0.4 4,888,722 - -0.8 4,888,722 - -0.5 4,888,739 + -1.6 4,888,739 + +0.4 4,888,739 + -0.1 4,888,739 + -1.9 4,888,776 - AO356_21835 0.15 +1.7
Or see this region's nucleotide sequence