Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18495

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18485 and AO356_18490 are separated by 1 nucleotidesAO356_18490 and AO356_18495 are separated by 87 nucleotidesAO356_18495 and AO356_18500 are separated by 13 nucleotidesAO356_18500 and AO356_18505 are separated by 0 nucleotides AO356_18485: AO356_18485 - hypothetical protein, at 4,160,780 to 4,161,079 _18485 AO356_18490: AO356_18490 - septation protein A, at 4,161,081 to 4,161,677 _18490 AO356_18495: AO356_18495 - phosphoesterase, at 4,161,765 to 4,162,628 _18495 AO356_18500: AO356_18500 - hypothetical protein, at 4,162,642 to 4,163,271 _18500 AO356_18505: AO356_18505 - chromosome segregation protein ScpA, at 4,163,272 to 4,164,102 _18505 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4160.781 kb on + strandat 4160.781 kb on + strandat 4160.823 kb on + strand, within AO356_18485at 4161.072 kb on + strandat 4161.072 kb on + strandat 4161.073 kb on - strandat 4161.073 kb on - strandat 4161.073 kb on - strandat 4161.073 kb on - strandat 4161.708 kb on + strandat 4161.709 kb on - strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.753 kb on + strandat 4161.754 kb on - strandat 4161.754 kb on - strandat 4161.788 kb on + strandat 4161.788 kb on + strandat 4161.789 kb on - strandat 4161.962 kb on + strand, within AO356_18495at 4161.962 kb on + strand, within AO356_18495at 4161.962 kb on + strand, within AO356_18495at 4161.962 kb on + strand, within AO356_18495at 4161.963 kb on - strand, within AO356_18495at 4161.996 kb on + strand, within AO356_18495at 4161.996 kb on + strand, within AO356_18495at 4161.996 kb on + strand, within AO356_18495at 4161.997 kb on - strand, within AO356_18495at 4162.356 kb on + strand, within AO356_18495at 4162.357 kb on - strand, within AO356_18495at 4162.357 kb on - strand, within AO356_18495at 4162.398 kb on + strand, within AO356_18495at 4162.398 kb on + strand, within AO356_18495at 4162.399 kb on - strand, within AO356_18495at 4162.399 kb on - strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.634 kb on + strandat 4162.634 kb on + strandat 4162.634 kb on + strandat 4162.635 kb on - strandat 4162.635 kb on - strandat 4162.635 kb on - strandat 4162.635 kb on - strandat 4162.735 kb on + strand, within AO356_18500at 4162.735 kb on + strand, within AO356_18500at 4162.753 kb on + strand, within AO356_18500at 4162.753 kb on + strand, within AO356_18500at 4162.753 kb on + strand, within AO356_18500at 4162.754 kb on - strand, within AO356_18500at 4162.754 kb on - strand, within AO356_18500at 4162.930 kb on + strand, within AO356_18500at 4162.930 kb on + strand, within AO356_18500at 4162.930 kb on + strand, within AO356_18500at 4162.931 kb on - strand, within AO356_18500at 4163.114 kb on - strand, within AO356_18500at 4163.129 kb on + strand, within AO356_18500at 4163.129 kb on + strand, within AO356_18500at 4163.130 kb on - strand, within AO356_18500at 4163.350 kb on + strandat 4163.351 kb on - strandat 4163.351 kb on - strandat 4163.386 kb on + strand, within AO356_18505at 4163.386 kb on + strand, within AO356_18505at 4163.386 kb on + strand, within AO356_18505at 4163.387 kb on - strand, within AO356_18505at 4163.387 kb on - strand, within AO356_18505at 4163.387 kb on - strand, within AO356_18505at 4163.453 kb on - strand, within AO356_18505at 4163.479 kb on - strand, within AO356_18505at 4163.515 kb on + strand, within AO356_18505at 4163.515 kb on + strand, within AO356_18505at 4163.515 kb on + strand, within AO356_18505at 4163.516 kb on - strand, within AO356_18505at 4163.524 kb on + strand, within AO356_18505at 4163.547 kb on - strand, within AO356_18505at 4163.570 kb on - strand, within AO356_18505at 4163.570 kb on - strand, within AO356_18505at 4163.570 kb on - strand, within AO356_18505

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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4,160,781 + +0.4
4,160,781 + -1.3
4,160,823 + AO356_18485 0.14 +0.2
4,161,072 + +0.0
4,161,072 + +0.2
4,161,073 - +0.6
4,161,073 - -2.1
4,161,073 - -0.2
4,161,073 - -0.6
4,161,708 + +0.6
4,161,709 - +0.1
4,161,711 + -1.7
4,161,711 + -2.2
4,161,711 + +0.3
4,161,711 + -2.2
4,161,711 + -0.6
4,161,711 + -0.9
4,161,711 + -2.0
4,161,711 + -0.2
4,161,711 + -1.2
4,161,712 - -1.0
4,161,712 - +0.9
4,161,712 - +0.1
4,161,712 - +0.5
4,161,712 - +0.8
4,161,712 - +0.6
4,161,712 - +0.7
4,161,712 - +0.2
4,161,712 - -0.1
4,161,753 + +0.3
4,161,754 - -0.5
4,161,754 - +2.2
4,161,788 + -0.2
4,161,788 + -1.4
4,161,789 - +0.2
4,161,962 + AO356_18495 0.23 -0.2
4,161,962 + AO356_18495 0.23 -0.4
4,161,962 + AO356_18495 0.23 +0.3
4,161,962 + AO356_18495 0.23 -0.8
4,161,963 - AO356_18495 0.23 +0.3
4,161,996 + AO356_18495 0.27 +0.8
4,161,996 + AO356_18495 0.27 -0.1
4,161,996 + AO356_18495 0.27 +0.4
4,161,997 - AO356_18495 0.27 +0.4
4,162,356 + AO356_18495 0.68 +0.7
4,162,357 - AO356_18495 0.69 +0.0
4,162,357 - AO356_18495 0.69 +0.5
4,162,398 + AO356_18495 0.73 +0.4
4,162,398 + AO356_18495 0.73 +0.7
4,162,399 - AO356_18495 0.73 +0.0
4,162,399 - AO356_18495 0.73 +0.6
4,162,400 + AO356_18495 0.73 -0.5
4,162,400 + AO356_18495 0.73 +0.6
4,162,400 + AO356_18495 0.73 +0.6
4,162,400 + AO356_18495 0.73 +0.8
4,162,401 - AO356_18495 0.74 -2.2
4,162,401 - AO356_18495 0.74 +1.0
4,162,401 - AO356_18495 0.74 -0.4
4,162,401 - AO356_18495 0.74 +0.6
4,162,401 - AO356_18495 0.74 +0.4
4,162,401 - AO356_18495 0.74 +1.0
4,162,634 + +0.9
4,162,634 + +0.4
4,162,634 + +2.8
4,162,635 - +0.7
4,162,635 - -0.3
4,162,635 - +0.6
4,162,635 - -1.0
4,162,735 + AO356_18500 0.15 +2.0
4,162,735 + AO356_18500 0.15 +0.6
4,162,753 + AO356_18500 0.18 +1.1
4,162,753 + AO356_18500 0.18 -0.3
4,162,753 + AO356_18500 0.18 +1.0
4,162,754 - AO356_18500 0.18 +0.5
4,162,754 - AO356_18500 0.18 +0.8
4,162,930 + AO356_18500 0.46 +0.7
4,162,930 + AO356_18500 0.46 +0.6
4,162,930 + AO356_18500 0.46 +0.1
4,162,931 - AO356_18500 0.46 +1.1
4,163,114 - AO356_18500 0.75 +0.6
4,163,129 + AO356_18500 0.77 +1.1
4,163,129 + AO356_18500 0.77 +1.8
4,163,130 - AO356_18500 0.77 +0.9
4,163,350 + -0.3
4,163,351 - +0.6
4,163,351 - +0.1
4,163,386 + AO356_18505 0.14 -0.5
4,163,386 + AO356_18505 0.14 -0.0
4,163,386 + AO356_18505 0.14 +0.8
4,163,387 - AO356_18505 0.14 -0.2
4,163,387 - AO356_18505 0.14 +0.8
4,163,387 - AO356_18505 0.14 -0.1
4,163,453 - AO356_18505 0.22 +1.9
4,163,479 - AO356_18505 0.25 +0.3
4,163,515 + AO356_18505 0.29 +1.2
4,163,515 + AO356_18505 0.29 +1.4
4,163,515 + AO356_18505 0.29 -0.3
4,163,516 - AO356_18505 0.29 +0.3
4,163,524 + AO356_18505 0.30 -0.5
4,163,547 - AO356_18505 0.33 -0.5
4,163,570 - AO356_18505 0.36 +0.8
4,163,570 - AO356_18505 0.36 -0.4
4,163,570 - AO356_18505 0.36 +0.6

Or see this region's nucleotide sequence