Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09375

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
2,118,316	-		AO356_09370	0.45	-4.2
2,118,357	+		AO356_09370	0.48	-1.3
2,118,357	+		AO356_09370	0.48	-1.7
2,118,357	+		AO356_09370	0.48	-2.9
2,118,357	+		AO356_09370	0.48	-2.0
2,118,357	+		AO356_09370	0.48	-2.5
2,118,357	+		AO356_09370	0.48	-3.5
2,118,357	+		AO356_09370	0.48	-0.4
2,118,357	+		AO356_09370	0.48	-2.5
2,118,357	+		AO356_09370	0.48	-3.8
2,118,357	+		AO356_09370	0.48	-3.3
2,118,358	-		AO356_09370	0.48	-2.0
2,118,358	-		AO356_09370	0.48	-3.0
2,118,358	-		AO356_09370	0.48	-0.6
2,118,358	-		AO356_09370	0.48	-2.6
2,118,363	+		AO356_09370	0.48	-3.6
2,118,363	+		AO356_09370	0.48	-2.8
2,118,363	+		AO356_09370	0.48	-3.1
2,118,363	+		AO356_09370	0.48	-2.4
2,118,363	+		AO356_09370	0.48	-2.5
2,118,363	+		AO356_09370	0.48	-2.4
2,118,363	+		AO356_09370	0.48	-2.6
2,118,363	+		AO356_09370	0.48	-1.3
2,118,363	+		AO356_09370	0.48	-1.8
2,118,364	-		AO356_09370	0.48	-3.9
2,118,364	-		AO356_09370	0.48	-2.4
2,118,364	-		AO356_09370	0.48	-2.6
2,118,364	-		AO356_09370	0.48	-3.1
2,118,364	-		AO356_09370	0.48	-3.1
2,118,364	-		AO356_09370	0.48	-3.6
2,118,364	-		AO356_09370	0.48	-2.7
2,118,364	-		AO356_09370	0.48	-0.8
2,118,364	-		AO356_09370	0.48	-4.1
2,118,364	-		AO356_09370	0.48	-3.5
2,118,364	-		AO356_09370	0.48	-4.0
2,118,393	+		AO356_09370	0.50	-1.0
2,118,394	-		AO356_09370	0.50	-4.0
2,118,394	-		AO356_09370	0.50	-3.9
2,118,591	-		AO356_09370	0.64	-3.5
2,118,714	+		AO356_09370	0.73	-2.4
2,118,714	+		AO356_09370	0.73	-3.2
2,118,714	+		AO356_09370	0.73	-1.4
2,118,714	+		AO356_09370	0.73	-3.5
2,118,714	+		AO356_09370	0.73	-2.6
2,118,714	+		AO356_09370	0.73	-0.6
2,118,715	-		AO356_09370	0.73	-2.8
2,118,715	-		AO356_09370	0.73	-2.9
2,118,715	-		AO356_09370	0.73	-2.7
2,118,715	-		AO356_09370	0.73	-2.2
2,118,715	-		AO356_09370	0.73	-3.6
2,118,715	-		AO356_09370	0.73	-2.7
2,118,715	-		AO356_09370	0.73	-1.3
2,118,715	-		AO356_09370	0.73	-2.7
2,119,101	-				-3.6
2,119,101	-				-4.2
2,119,101	-				-1.7
2,119,101	-				-3.2
2,119,212	+				-3.3
2,119,212	+				-2.8
2,119,212	+				-4.5
2,119,213	-				-2.9
2,119,213	-				-3.1
2,119,269	+				-1.7
2,119,270	-				-3.8
2,119,270	-				-1.9
2,119,270	-				-1.7
2,119,302	+				-4.7
2,119,392	+				-3.5
2,119,393	-				-2.1
2,119,393	-				-2.3
2,119,393	-				-1.4
2,119,393	-				-2.2
2,119,426	+				-3.8
2,119,426	+				-3.3
2,119,426	+				-2.4
2,119,427	-				-4.1
2,119,427	-				-1.4
2,119,427	-				-3.5
2,119,428	+				-2.9
2,119,428	+				-1.7
2,119,439	-				-2.8
2,119,470	+				-3.6
2,119,470	+				-1.6
2,119,471	-				-3.0
2,119,471	-				-3.0
2,119,522	+				-1.3
2,119,522	+				-0.3
2,119,522	+				-3.0
2,119,584	+		AO356_09375	0.10	-3.9
2,119,626	+		AO356_09375	0.11	-3.1
2,119,626	+		AO356_09375	0.11	-2.0
2,119,626	+		AO356_09375	0.11	-2.3
2,119,626	+		AO356_09375	0.11	-4.3
2,119,627	-		AO356_09375	0.11	-2.8
2,119,627	-		AO356_09375	0.11	-3.2
2,119,627	-		AO356_09375	0.11	-2.7
2,119,687	-		AO356_09375	0.13	-3.3
2,119,710	+		AO356_09375	0.13	-2.5
2,119,710	+		AO356_09375	0.13	-1.7
2,119,710	+		AO356_09375	0.13	-2.6
2,119,710	+		AO356_09375	0.13	-3.3
2,119,710	+		AO356_09375	0.13	-2.8
2,119,710	+		AO356_09375	0.13	-3.4
2,119,710	+		AO356_09375	0.13	-2.8
2,119,711	-		AO356_09375	0.13	-1.8
2,119,711	-		AO356_09375	0.13	-2.6
2,119,711	-		AO356_09375	0.13	-3.8
2,119,868	-		AO356_09375	0.17	-2.9
2,120,154	+		AO356_09375	0.23	-1.7
2,120,154	+		AO356_09375	0.23	-3.3
2,120,154	+		AO356_09375	0.23	-0.6
2,120,154	+		AO356_09375	0.23	-1.6
2,120,155	-		AO356_09375	0.23	-3.3
2,120,155	-		AO356_09375	0.23	-2.4
2,120,193	+		AO356_09375	0.24	-3.8
2,120,193	+		AO356_09375	0.24	-0.8
2,120,193	+		AO356_09375	0.24	-3.3
2,120,193	+		AO356_09375	0.24	-4.0
2,120,193	+		AO356_09375	0.24	-1.3
2,120,194	-		AO356_09375	0.24	-3.7
2,120,194	-		AO356_09375	0.24	-2.1
2,120,194	-		AO356_09375	0.24	-3.5
2,120,194	-		AO356_09375	0.24	-1.9
2,120,194	-		AO356_09375	0.24	-3.0
2,120,268	+		AO356_09375	0.26	-3.0
2,120,268	+		AO356_09375	0.26	-4.6
2,120,268	+		AO356_09375	0.26	-3.7
2,120,268	+		AO356_09375	0.26	-3.0
2,120,268	+		AO356_09375	0.26	-3.4
2,120,268	+		AO356_09375	0.26	-4.2
2,120,268	+		AO356_09375	0.26	-0.6
2,120,268	+		AO356_09375	0.26	-3.0
2,120,460	+		AO356_09375	0.30	-2.7
2,120,460	+		AO356_09375	0.30	-3.0
2,120,460	+		AO356_09375	0.30	-3.1
2,120,461	-		AO356_09375	0.30	-3.1
2,120,461	-		AO356_09375	0.30	-2.3
2,120,529	+		AO356_09375	0.31	-1.7
2,120,529	+		AO356_09375	0.31	-2.2
2,120,529	+		AO356_09375	0.31	+0.5
2,120,530	-		AO356_09375	0.31	-3.8
2,120,530	-		AO356_09375	0.31	-0.8
2,120,655	+		AO356_09375	0.34	-2.9
2,120,655	+		AO356_09375	0.34	+1.0
2,120,655	+		AO356_09375	0.34	-3.4
2,120,655	+		AO356_09375	0.34	-4.0
2,120,656	-		AO356_09375	0.34	-2.0
2,120,798	+		AO356_09375	0.37	-2.4
2,120,799	-		AO356_09375	0.38	-2.5
2,120,817	+		AO356_09375	0.38	-3.8
2,120,818	-		AO356_09375	0.38	-2.0
2,120,818	-		AO356_09375	0.38	-1.9
2,120,818	-		AO356_09375	0.38	-2.2
2,120,992	+		AO356_09375	0.42	+0.4
2,121,126	+		AO356_09375	0.45	-3.6
2,121,126	+		AO356_09375	0.45	-3.8
2,121,126	+		AO356_09375	0.45	-2.7
2,121,127	-		AO356_09375	0.45	-2.7
2,121,127	-		AO356_09375	0.45	-0.1
2,121,127	-		AO356_09375	0.45	-3.7
2,121,127	-		AO356_09375	0.45	-0.2
2,121,127	-		AO356_09375	0.45	-3.2
2,121,127	-		AO356_09375	0.45	-2.6
2,121,144	+		AO356_09375	0.45	-2.9
2,121,145	-		AO356_09375	0.45	-0.8
2,121,145	-		AO356_09375	0.45	-2.6
2,121,195	+		AO356_09375	0.46	-3.4
2,121,196	-		AO356_09375	0.46	-2.4
2,121,196	-		AO356_09375	0.46	-2.4
2,121,204	+		AO356_09375	0.47	-1.1
2,121,204	+		AO356_09375	0.47	-3.5
2,121,204	+		AO356_09375	0.47	-1.2
2,121,204	+		AO356_09375	0.47	-2.6
2,121,205	-		AO356_09375	0.47	-2.7
2,121,322	+		AO356_09375	0.49	+0.5
2,121,475	-		AO356_09375	0.53	-2.0
2,121,543	+		AO356_09375	0.54	-3.6
2,121,544	-		AO356_09375	0.54	-2.4
2,121,544	-		AO356_09375	0.54	-2.2
2,121,544	-		AO356_09375	0.54	-3.6
2,121,559	-		AO356_09375	0.55	-2.3
2,121,559	-		AO356_09375	0.55	-3.2
2,121,559	-		AO356_09375	0.55	-2.0
2,121,831	+		AO356_09375	0.61	-2.9
2,121,831	+		AO356_09375	0.61	-1.8
2,121,831	+		AO356_09375	0.61	-3.3
2,121,832	-		AO356_09375	0.61	-3.6
2,121,832	-		AO356_09375	0.61	-2.4
2,122,062	+		AO356_09375	0.66	-3.0
2,122,062	+		AO356_09375	0.66	-3.2
2,122,194	+		AO356_09375	0.69	-2.1
2,122,194	+		AO356_09375	0.69	-2.1
2,122,195	-		AO356_09375	0.69	-2.3
2,122,206	+		AO356_09375	0.69	-0.6
2,122,206	+		AO356_09375	0.69	-1.9
2,122,206	+		AO356_09375	0.69	-0.0
2,122,206	+		AO356_09375	0.69	-2.0
2,122,206	+		AO356_09375	0.69	-2.3
2,122,206	+		AO356_09375	0.69	-3.3
2,122,206	+		AO356_09375	0.69	-2.8
2,122,206	+		AO356_09375	0.69	-2.8
2,122,206	+		AO356_09375	0.69	-1.4
2,122,207	-		AO356_09375	0.69	-3.9
2,122,207	-		AO356_09375	0.69	-3.0
2,122,230	+		AO356_09375	0.70	-3.2
2,122,230	+		AO356_09375	0.70	-4.2
2,122,230	+		AO356_09375	0.70	-3.8
2,122,231	-		AO356_09375	0.70	-3.2
2,122,231	-		AO356_09375	0.70	-2.1
2,122,305	+		AO356_09375	0.71	-3.8
2,122,305	+		AO356_09375	0.71	-2.2
2,122,306	-		AO356_09375	0.71	-1.8
2,122,306	-		AO356_09375	0.71	-2.4
2,122,432	-		AO356_09375	0.74	-2.6
2,122,432	-		AO356_09375	0.74	-1.4
2,122,510	+		AO356_09375	0.76	-2.6
2,122,533	+		AO356_09375	0.76	-1.6
2,122,596	+		AO356_09375	0.78	-3.1
2,122,596	+		AO356_09375	0.78	-4.4
2,122,596	+		AO356_09375	0.78	-2.7
2,122,596	+		AO356_09375	0.78	-2.9
2,122,597	-		AO356_09375	0.78	-2.6
2,122,597	-		AO356_09375	0.78	-2.1
2,122,597	-		AO356_09375	0.78	-2.3
2,122,597	-		AO356_09375	0.78	-1.0
2,122,602	+		AO356_09375	0.78	-3.8
2,122,602	+		AO356_09375	0.78	-1.3
2,122,602	+		AO356_09375	0.78	-3.3
2,122,603	-		AO356_09375	0.78	-2.8
2,122,603	-		AO356_09375	0.78	-2.0
2,122,974	+		AO356_09375	0.86	-2.6
2,122,974	+		AO356_09375	0.86	-1.8
2,122,975	-		AO356_09375	0.86	-3.0
2,123,013	+		AO356_09375	0.87	-2.7
2,123,013	+		AO356_09375	0.87	-4.3
2,123,013	+		AO356_09375	0.87	-1.6
2,123,013	+		AO356_09375	0.87	-4.4
2,123,013	+		AO356_09375	0.87	-1.9
2,123,013	+		AO356_09375	0.87	-1.9
2,123,014	-		AO356_09375	0.87	-2.6
2,123,017	+		AO356_09375	0.87	-1.3
2,123,017	+		AO356_09375	0.87	-4.1
2,123,017	+		AO356_09375	0.87	-2.1
2,123,018	-		AO356_09375	0.87	+0.0
2,123,018	-		AO356_09375	0.87	-3.0
2,123,046	+		AO356_09375	0.88	-2.3
2,123,046	+		AO356_09375	0.88	-3.1
2,123,046	+		AO356_09375	0.88	-3.4
2,123,046	+		AO356_09375	0.88	-2.3
2,123,046	+		AO356_09375	0.88	-2.0
2,123,047	-		AO356_09375	0.88	-2.9
2,123,047	-		AO356_09375	0.88	-2.0
2,123,047	-		AO356_09375	0.88	-3.8
2,123,047	-		AO356_09375	0.88	-2.9
2,123,047	-		AO356_09375	0.88	-2.8
2,123,325	+				-3.5
2,123,325	+				-2.1
2,123,326	-				-3.0
2,123,326	-				-3.7
2,123,491	+				-4.3
2,123,491	+				-4.0
2,123,512	+				-2.7
2,123,512	+				-4.5
2,123,512	+				-3.5
2,123,512	+				-2.6
2,123,512	+				-2.1
2,123,512	+				-2.4
2,123,512	+				-4.1
2,123,512	+				-3.4
2,123,512	+				-2.7
2,123,513	-				-1.6
2,123,513	-				-2.4
2,123,513	-				-3.1
2,123,513	-				-3.5
2,123,519	+				-3.8
2,123,519	+				-3.4
2,123,519	+				-3.0
2,123,520	-				-1.3
2,123,520	-				-2.2
2,123,520	-				-3.2
2,123,520	-				-3.3
2,123,520	-				-2.1
2,123,520	-				-3.8
2,123,520	-				-2.2
2,123,520	-				-2.9
2,123,520	-				-1.6
2,123,539	+				-3.3
2,123,539	+				-3.7
2,123,539	+				-0.8
2,123,540	-				-3.2
2,123,540	-				-3.3
2,123,540	-				-2.9
2,123,540	-				-3.3
2,123,540	-				-0.8
2,123,562	+				-2.1
2,123,563	-				-3.1
2,123,579	-				-0.3
2,123,692	+				-1.8
2,123,692	+				-0.7
2,123,692	+				-2.5
2,123,692	+				+1.0
2,123,692	+				-2.2
2,123,692	+				-0.4
2,123,692	+				-3.8
2,123,692	+				-1.4
2,123,692	+				-2.1
2,123,693	-				-0.4
2,123,693	-				-0.6
2,123,693	-				-0.3
2,123,693	-				+0.1
2,123,693	-				+0.4
2,123,693	-				+0.4
2,123,770	+				+0.7
2,123,770	+				+0.6
2,123,770	+				+0.2
2,123,770	+				-1.1
2,123,770	+				-0.8
2,123,771	-				-0.5
2,123,771	-				+1.5
2,123,811	-				-0.4
2,123,825	-				-0.3
2,124,056	+				-1.3
2,124,056	+				+0.0
2,124,056	+				-0.3
2,124,057	-				+0.1
2,124,057	-				+0.1
2,124,057	-				-0.5
2,124,068	+				-2.8
2,124,068	+				-0.1
2,124,068	+				+0.2
2,124,068	+				+0.2
2,124,068	+				+0.2
2,124,068	+				+0.9
2,124,068	+				+0.5
2,124,068	+				-0.9
2,124,068	+				-0.3
2,124,069	-				+0.5
2,124,069	-				+0.0
2,124,069	-				+0.1
2,124,069	-				-0.8
2,124,069	-				-0.6
2,124,101	+		AO356_09380	0.11	-1.8
2,124,101	+		AO356_09380	0.11	+1.0
2,124,101	+		AO356_09380	0.11	-0.7
2,124,102	-		AO356_09380	0.11	-0.3
2,124,102	-		AO356_09380	0.11	-0.5
2,124,102	-		AO356_09380	0.11	-1.1
2,124,179	+		AO356_09380	0.16	-0.3
2,124,179	+		AO356_09380	0.16	+0.1
2,124,180	-		AO356_09380	0.16	+0.6
2,124,180	-		AO356_09380	0.16	+0.4
2,124,180	-		AO356_09380	0.16	+0.2
2,124,180	-		AO356_09380	0.16	+0.4
2,124,180	-		AO356_09380	0.16	-0.6
2,124,180	-		AO356_09380	0.16	+0.2
2,124,180	-		AO356_09380	0.16	+0.8
2,124,180	-		AO356_09380	0.16	-0.2
2,124,180	-		AO356_09380	0.16	-0.0
2,124,203	+		AO356_09380	0.17	+1.2
2,124,462	+		AO356_09380	0.34	+0.6