Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08785

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08785 and AO356_08790 are separated by 99 nucleotidesAO356_08790 and AO356_08795 overlap by 10 nucleotides AO356_08785: AO356_08785 - serine/threonine protein phosphatase, at 1,980,731 to 1,981,546 _08785 AO356_08790: AO356_08790 - cytoplasmic protein, at 1,981,646 to 1,982,098 _08790 AO356_08795: AO356_08795 - ADP-ribose pyrophosphatase, at 1,982,089 to 1,982,706 _08795 Position (kb) 1980 1981 1982Strain fitness (log2 ratio) -1 0 1 2at 1979.766 kb on + strandat 1979.766 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.772 kb on + strandat 1979.799 kb on - strandat 1979.799 kb on - strandat 1979.801 kb on - strandat 1979.801 kb on - strandat 1979.801 kb on - strandat 1979.801 kb on - strandat 1980.014 kb on - strandat 1980.084 kb on + strandat 1980.089 kb on - strandat 1980.089 kb on - strandat 1980.089 kb on - strandat 1980.089 kb on - strandat 1980.145 kb on + strandat 1980.145 kb on + strandat 1980.145 kb on + strandat 1980.147 kb on + strandat 1980.147 kb on + strandat 1980.147 kb on + strandat 1980.361 kb on + strandat 1980.361 kb on + strandat 1980.361 kb on + strandat 1980.361 kb on + strandat 1980.388 kb on + strandat 1980.750 kb on + strandat 1980.750 kb on + strandat 1980.750 kb on + strandat 1980.750 kb on + strandat 1980.750 kb on + strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1980.751 kb on - strandat 1981.535 kb on + strandat 1981.535 kb on + strandat 1981.536 kb on - strandat 1981.593 kb on + strandat 1981.593 kb on + strandat 1981.594 kb on - strandat 1981.594 kb on - strandat 1981.594 kb on - strandat 1981.647 kb on + strandat 1981.647 kb on + strandat 1981.648 kb on - strandat 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.764 kb on + strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.765 kb on - strand, within AO356_08790at 1981.827 kb on + strand, within AO356_08790at 1981.902 kb on + strand, within AO356_08790at 1981.902 kb on + strand, within AO356_08790at 1981.902 kb on + strand, within AO356_08790at 1981.902 kb on + strand, within AO356_08790at 1981.902 kb on + strand, within AO356_08790at 1981.903 kb on - strand, within AO356_08790at 1981.903 kb on - strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.025 kb on + strand, within AO356_08790at 1982.026 kb on - strand, within AO356_08790at 1982.026 kb on - strand, within AO356_08790at 1982.098 kb on + strandat 1982.099 kb on - strandat 1982.166 kb on + strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.167 kb on - strand, within AO356_08795at 1982.296 kb on + strand, within AO356_08795at 1982.330 kb on + strand, within AO356_08795at 1982.331 kb on - strand, within AO356_08795at 1982.331 kb on - strand, within AO356_08795

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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1,979,766 + +0.5
1,979,766 + -0.3
1,979,772 + -0.2
1,979,772 + +0.5
1,979,772 + +0.3
1,979,772 + -0.5
1,979,772 + -0.3
1,979,772 + +0.5
1,979,772 + +0.6
1,979,772 + +0.8
1,979,772 + +1.2
1,979,772 + -0.5
1,979,772 + -0.6
1,979,772 + +0.1
1,979,772 + +0.7
1,979,772 + +0.3
1,979,799 - +0.4
1,979,799 - +0.6
1,979,801 - -0.6
1,979,801 - +0.4
1,979,801 - -1.1
1,979,801 - -0.3
1,980,014 - -0.5
1,980,084 + -1.2
1,980,089 - -0.1
1,980,089 - +0.9
1,980,089 - +0.6
1,980,089 - +1.0
1,980,145 + -0.2
1,980,145 + +0.1
1,980,145 + +0.5
1,980,147 + -0.2
1,980,147 + -0.6
1,980,147 + +1.1
1,980,361 + -0.2
1,980,361 + +1.2
1,980,361 + -0.4
1,980,361 + -0.2
1,980,388 + -0.7
1,980,750 + -0.6
1,980,750 + +0.7
1,980,750 + +0.5
1,980,750 + -0.3
1,980,750 + +0.1
1,980,751 - +0.2
1,980,751 - -0.3
1,980,751 - +0.7
1,980,751 - -0.3
1,980,751 - -0.0
1,980,751 - +0.5
1,980,751 - +0.5
1,980,751 - +0.2
1,980,751 - +0.1
1,980,751 - -0.5
1,981,535 + -0.3
1,981,535 + +0.3
1,981,536 - -0.2
1,981,593 + -0.2
1,981,593 + +0.1
1,981,594 - -0.6
1,981,594 - +0.3
1,981,594 - +0.8
1,981,647 + -1.6
1,981,647 + +0.3
1,981,648 - +0.4
1,981,764 + AO356_08790 0.26 +0.0
1,981,764 + AO356_08790 0.26 -0.8
1,981,764 + AO356_08790 0.26 +0.3
1,981,764 + AO356_08790 0.26 +0.4
1,981,764 + AO356_08790 0.26 +1.0
1,981,764 + AO356_08790 0.26 +2.0
1,981,764 + AO356_08790 0.26 -1.5
1,981,764 + AO356_08790 0.26 +0.5
1,981,764 + AO356_08790 0.26 +0.1
1,981,764 + AO356_08790 0.26 +0.1
1,981,764 + AO356_08790 0.26 +1.0
1,981,764 + AO356_08790 0.26 +1.0
1,981,764 + AO356_08790 0.26 +0.8
1,981,765 - AO356_08790 0.26 +0.1
1,981,765 - AO356_08790 0.26 +1.0
1,981,765 - AO356_08790 0.26 +0.4
1,981,765 - AO356_08790 0.26 +1.0
1,981,765 - AO356_08790 0.26 +0.5
1,981,765 - AO356_08790 0.26 +0.2
1,981,765 - AO356_08790 0.26 +0.5
1,981,765 - AO356_08790 0.26 +0.2
1,981,765 - AO356_08790 0.26 +0.5
1,981,765 - AO356_08790 0.26 +0.5
1,981,765 - AO356_08790 0.26 +0.7
1,981,765 - AO356_08790 0.26 +0.6
1,981,827 + AO356_08790 0.40 +0.9
1,981,902 + AO356_08790 0.57 +0.4
1,981,902 + AO356_08790 0.57 +1.5
1,981,902 + AO356_08790 0.57 +0.4
1,981,902 + AO356_08790 0.57 -1.0
1,981,902 + AO356_08790 0.57 +0.6
1,981,903 - AO356_08790 0.57 +1.2
1,981,903 - AO356_08790 0.57 +1.0
1,982,025 + AO356_08790 0.84 +0.4
1,982,025 + AO356_08790 0.84 +0.7
1,982,025 + AO356_08790 0.84 +0.6
1,982,025 + AO356_08790 0.84 +0.2
1,982,025 + AO356_08790 0.84 +0.7
1,982,025 + AO356_08790 0.84 +0.7
1,982,026 - AO356_08790 0.84 +0.4
1,982,026 - AO356_08790 0.84 +1.5
1,982,098 + -0.0
1,982,099 - -0.7
1,982,166 + AO356_08795 0.12 -0.1
1,982,167 - AO356_08795 0.13 +0.2
1,982,167 - AO356_08795 0.13 -1.2
1,982,167 - AO356_08795 0.13 -1.0
1,982,167 - AO356_08795 0.13 -0.2
1,982,167 - AO356_08795 0.13 -0.0
1,982,167 - AO356_08795 0.13 -0.4
1,982,167 - AO356_08795 0.13 -0.0
1,982,167 - AO356_08795 0.13 +0.2
1,982,296 + AO356_08795 0.33 -0.1
1,982,330 + AO356_08795 0.39 -1.4
1,982,331 - AO356_08795 0.39 +0.7
1,982,331 - AO356_08795 0.39 +1.2

Or see this region's nucleotide sequence