Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03765 and AO356_03770 are separated by 23 nucleotides AO356_03770 and AO356_03775 overlap by 1 nucleotides AO356_03775 and AO356_03780 are separated by 0 nucleotides AO356_03780 and AO356_03785 are separated by 71 nucleotides
AO356_03765: AO356_03765 - flagellar biosynthetic protein FliQ, at 836,988 to 837,257
_03765
AO356_03770: AO356_03770 - flagellar biosynthesis protein flip, at 837,281 to 838,030
_03770
AO356_03775: AO356_03775 - flagellar assembly protein FliO, at 838,030 to 838,467
_03775
AO356_03780: AO356_03780 - flagellar motor switch protein, at 838,468 to 838,926
_03780
AO356_03785: AO356_03785 - flagellar motor switch protein FliM, at 838,998 to 839,966
_03785
Position (kb) 838
839 Strain fitness (log2 ratio) -1
0
1
2 at 837.031 kb on + strand, within AO356_03765 at 837.031 kb on + strand, within AO356_03765 at 837.031 kb on + strand, within AO356_03765 at 837.031 kb on + strand, within AO356_03765 at 837.031 kb on + strand, within AO356_03765 at 837.031 kb on + strand, within AO356_03765 at 837.032 kb on - strand, within AO356_03765 at 837.032 kb on - strand, within AO356_03765 at 837.032 kb on - strand, within AO356_03765 at 837.032 kb on - strand, within AO356_03765 at 837.032 kb on - strand, within AO356_03765 at 837.032 kb on - strand, within AO356_03765 at 837.048 kb on + strand, within AO356_03765 at 837.048 kb on + strand, within AO356_03765 at 837.048 kb on + strand, within AO356_03765 at 837.049 kb on - strand, within AO356_03765 at 837.237 kb on + strand at 837.243 kb on + strand at 837.243 kb on + strand at 837.243 kb on + strand at 837.244 kb on - strand at 837.257 kb on + strand at 837.265 kb on + strand at 837.282 kb on + strand at 837.282 kb on + strand at 837.311 kb on - strand at 837.397 kb on + strand, within AO356_03770 at 837.397 kb on + strand, within AO356_03770 at 837.398 kb on - strand, within AO356_03770 at 837.675 kb on + strand, within AO356_03770 at 837.675 kb on + strand, within AO356_03770 at 837.676 kb on - strand, within AO356_03770 at 837.676 kb on - strand, within AO356_03770 at 837.909 kb on + strand, within AO356_03770 at 837.910 kb on - strand, within AO356_03770 at 838.031 kb on + strand at 838.032 kb on - strand at 838.032 kb on - strand at 838.038 kb on + strand at 838.111 kb on + strand, within AO356_03775 at 838.864 kb on + strand, within AO356_03780 at 838.908 kb on + strand at 838.914 kb on + strand at 838.915 kb on - strand at 838.915 kb on - strand at 838.981 kb on + strand at 838.981 kb on + strand at 838.981 kb on + strand at 838.981 kb on + strand at 838.981 kb on + strand at 838.981 kb on + strand at 838.982 kb on - strand at 838.982 kb on - strand at 838.982 kb on - strand at 839.099 kb on + strand, within AO356_03785 at 839.099 kb on + strand, within AO356_03785 at 839.099 kb on + strand, within AO356_03785 at 839.099 kb on + strand, within AO356_03785 at 839.099 kb on + strand, within AO356_03785 at 839.099 kb on + strand, within AO356_03785 at 839.099 kb on + strand, within AO356_03785 at 839.100 kb on - strand, within AO356_03785 at 839.100 kb on - strand, within AO356_03785 at 839.100 kb on - strand, within AO356_03785 at 839.312 kb on - strand, within AO356_03785 at 839.434 kb on + strand, within AO356_03785 at 839.434 kb on + strand, within AO356_03785 at 839.434 kb on + strand, within AO356_03785 at 839.434 kb on + strand, within AO356_03785 at 839.434 kb on + strand, within AO356_03785 at 839.434 kb on + strand, within AO356_03785 at 839.435 kb on - strand, within AO356_03785 at 839.435 kb on - strand, within AO356_03785 at 839.435 kb on - strand, within AO356_03785
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 837,031 + AO356_03765 0.16 +0.6 837,031 + AO356_03765 0.16 +1.3 837,031 + AO356_03765 0.16 +1.4 837,031 + AO356_03765 0.16 +0.4 837,031 + AO356_03765 0.16 +1.2 837,031 + AO356_03765 0.16 +0.3 837,032 - AO356_03765 0.16 +1.1 837,032 - AO356_03765 0.16 +0.9 837,032 - AO356_03765 0.16 +1.8 837,032 - AO356_03765 0.16 -0.3 837,032 - AO356_03765 0.16 +0.2 837,032 - AO356_03765 0.16 +2.2 837,048 + AO356_03765 0.22 -0.0 837,048 + AO356_03765 0.22 +0.1 837,048 + AO356_03765 0.22 +0.6 837,049 - AO356_03765 0.23 +0.2 837,237 + +0.5 837,243 + +0.8 837,243 + +0.8 837,243 + +0.1 837,244 - +1.4 837,257 + -0.3 837,265 + +0.7 837,282 + +1.1 837,282 + +0.4 837,311 - +1.0 837,397 + AO356_03770 0.15 +1.1 837,397 + AO356_03770 0.15 +1.3 837,398 - AO356_03770 0.16 -0.9 837,675 + AO356_03770 0.53 +0.2 837,675 + AO356_03770 0.53 +0.9 837,676 - AO356_03770 0.53 +0.1 837,676 - AO356_03770 0.53 +0.7 837,909 + AO356_03770 0.84 +0.8 837,910 - AO356_03770 0.84 +0.6 838,031 + -0.0 838,032 - +0.7 838,032 - +0.4 838,038 + -0.3 838,111 + AO356_03775 0.18 +0.9 838,864 + AO356_03780 0.86 -0.2 838,908 + +0.5 838,914 + -0.0 838,915 - +1.2 838,915 - +0.2 838,981 + +0.3 838,981 + -0.0 838,981 + +0.2 838,981 + +1.6 838,981 + +2.5 838,981 + +0.4 838,982 - +1.3 838,982 - -0.4 838,982 - +0.6 839,099 + AO356_03785 0.10 +1.7 839,099 + AO356_03785 0.10 -0.4 839,099 + AO356_03785 0.10 +0.2 839,099 + AO356_03785 0.10 +0.5 839,099 + AO356_03785 0.10 +0.3 839,099 + AO356_03785 0.10 +0.6 839,099 + AO356_03785 0.10 +0.9 839,100 - AO356_03785 0.11 +0.7 839,100 - AO356_03785 0.11 +0.7 839,100 - AO356_03785 0.11 +0.5 839,312 - AO356_03785 0.32 +0.4 839,434 + AO356_03785 0.45 +1.4 839,434 + AO356_03785 0.45 +1.0 839,434 + AO356_03785 0.45 +1.1 839,434 + AO356_03785 0.45 +0.4 839,434 + AO356_03785 0.45 -0.1 839,434 + AO356_03785 0.45 +0.7 839,435 - AO356_03785 0.45 +0.3 839,435 - AO356_03785 0.45 +0.6 839,435 - AO356_03785 0.45 +1.2
Or see this region's nucleotide sequence