Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03220 and AO356_03225 are separated by 56 nucleotides AO356_03225 and AO356_03230 are separated by 10 nucleotides AO356_03230 and AO356_03235 overlap by 1 nucleotides
AO356_03220: AO356_03220 - hypothetical protein, at 715,516 to 715,809
_03220
AO356_03225: AO356_03225 - esterase, at 715,866 to 716,471
_03225
AO356_03230: AO356_03230 - ABC transporter, at 716,482 to 717,165
_03230
AO356_03235: AO356_03235 - ABC transporter permease, at 717,165 to 719,669
_03235
Position (kb) 716
717
718 Strain fitness (log2 ratio) -1
0
1
2 at 715.517 kb on + strand at 715.517 kb on + strand at 715.518 kb on - strand at 715.518 kb on - strand at 715.856 kb on + strand at 715.881 kb on + strand at 716.029 kb on + strand, within AO356_03225 at 716.029 kb on + strand, within AO356_03225 at 716.029 kb on + strand, within AO356_03225 at 716.030 kb on - strand, within AO356_03225 at 716.053 kb on + strand, within AO356_03225 at 716.054 kb on - strand, within AO356_03225 at 716.065 kb on + strand, within AO356_03225 at 716.066 kb on - strand, within AO356_03225 at 716.381 kb on + strand, within AO356_03225 at 716.381 kb on + strand, within AO356_03225 at 716.381 kb on + strand, within AO356_03225 at 716.381 kb on + strand, within AO356_03225 at 716.382 kb on - strand, within AO356_03225 at 716.382 kb on - strand, within AO356_03225 at 716.382 kb on - strand, within AO356_03225 at 716.384 kb on + strand, within AO356_03225 at 716.385 kb on - strand, within AO356_03225 at 716.385 kb on - strand, within AO356_03225 at 716.515 kb on - strand at 717.297 kb on + strand at 717.297 kb on + strand at 717.297 kb on + strand at 717.513 kb on + strand, within AO356_03235 at 717.513 kb on + strand, within AO356_03235 at 717.514 kb on - strand, within AO356_03235 at 717.514 kb on - strand, within AO356_03235 at 717.514 kb on - strand, within AO356_03235 at 717.514 kb on - strand, within AO356_03235 at 717.514 kb on - strand, within AO356_03235 at 717.514 kb on - strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.693 kb on + strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.694 kb on - strand, within AO356_03235 at 717.720 kb on + strand, within AO356_03235 at 717.802 kb on - strand, within AO356_03235 at 717.843 kb on + strand, within AO356_03235 at 717.844 kb on - strand, within AO356_03235
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 715,517 + -1.1 715,517 + +0.3 715,518 - -0.1 715,518 - +0.1 715,856 + +1.4 715,881 + +0.8 716,029 + AO356_03225 0.27 +1.1 716,029 + AO356_03225 0.27 +0.1 716,029 + AO356_03225 0.27 +0.8 716,030 - AO356_03225 0.27 +0.2 716,053 + AO356_03225 0.31 -0.5 716,054 - AO356_03225 0.31 -0.6 716,065 + AO356_03225 0.33 -0.2 716,066 - AO356_03225 0.33 -0.8 716,381 + AO356_03225 0.85 -0.9 716,381 + AO356_03225 0.85 -1.3 716,381 + AO356_03225 0.85 +0.5 716,381 + AO356_03225 0.85 -0.2 716,382 - AO356_03225 0.85 +0.4 716,382 - AO356_03225 0.85 -0.8 716,382 - AO356_03225 0.85 -0.2 716,384 + AO356_03225 0.85 +0.5 716,385 - AO356_03225 0.86 +0.2 716,385 - AO356_03225 0.86 -0.3 716,515 - -1.2 717,297 + +0.7 717,297 + +0.6 717,297 + +0.6 717,513 + AO356_03235 0.14 +0.3 717,513 + AO356_03235 0.14 -0.5 717,514 - AO356_03235 0.14 +0.3 717,514 - AO356_03235 0.14 -0.1 717,514 - AO356_03235 0.14 -0.4 717,514 - AO356_03235 0.14 +0.2 717,514 - AO356_03235 0.14 -0.4 717,514 - AO356_03235 0.14 +0.0 717,693 + AO356_03235 0.21 +0.6 717,693 + AO356_03235 0.21 -0.2 717,693 + AO356_03235 0.21 +0.5 717,693 + AO356_03235 0.21 -0.1 717,693 + AO356_03235 0.21 -0.1 717,693 + AO356_03235 0.21 +0.0 717,693 + AO356_03235 0.21 +0.6 717,693 + AO356_03235 0.21 +0.7 717,694 - AO356_03235 0.21 -0.4 717,694 - AO356_03235 0.21 +0.4 717,694 - AO356_03235 0.21 -0.4 717,694 - AO356_03235 0.21 +2.2 717,694 - AO356_03235 0.21 +0.5 717,694 - AO356_03235 0.21 -0.1 717,694 - AO356_03235 0.21 +0.6 717,694 - AO356_03235 0.21 +0.4 717,720 + AO356_03235 0.22 +0.2 717,802 - AO356_03235 0.25 -0.1 717,843 + AO356_03235 0.27 +0.0 717,844 - AO356_03235 0.27 -1.0
Or see this region's nucleotide sequence