Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03205 and AO356_03210 are separated by 635 nucleotides AO356_03210 and AO356_03215 are separated by 123 nucleotides
AO356_03205: AO356_03205 - acetyltransferase, at 713,000 to 713,281
_03205
AO356_03210: AO356_03210 - hypothetical protein, at 713,917 to 714,168
_03210
AO356_03215: AO356_03215 - hypothetical protein, at 714,292 to 715,263
_03215
Position (kb) 713
714
715 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 712.948 kb on - strand at 712.948 kb on - strand at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.037 kb on + strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.038 kb on - strand, within AO356_03205 at 713.049 kb on + strand, within AO356_03205 at 713.049 kb on + strand, within AO356_03205 at 713.050 kb on - strand, within AO356_03205 at 713.050 kb on - strand, within AO356_03205 at 713.050 kb on - strand, within AO356_03205 at 713.073 kb on + strand, within AO356_03205 at 713.091 kb on + strand, within AO356_03205 at 713.091 kb on + strand, within AO356_03205 at 713.163 kb on + strand, within AO356_03205 at 713.163 kb on + strand, within AO356_03205 at 713.163 kb on + strand, within AO356_03205 at 713.164 kb on - strand, within AO356_03205 at 713.164 kb on - strand, within AO356_03205 at 713.164 kb on - strand, within AO356_03205 at 713.168 kb on - strand, within AO356_03205 at 713.168 kb on - strand, within AO356_03205 at 713.168 kb on - strand, within AO356_03205 at 713.195 kb on - strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.196 kb on + strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.197 kb on - strand, within AO356_03205 at 713.205 kb on + strand, within AO356_03205 at 713.205 kb on + strand, within AO356_03205 at 713.205 kb on + strand, within AO356_03205 at 713.285 kb on + strand at 713.286 kb on - strand at 713.286 kb on - strand at 713.286 kb on - strand at 713.314 kb on + strand at 713.314 kb on + strand at 713.314 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.349 kb on - strand at 713.349 kb on - strand at 713.418 kb on + strand at 713.418 kb on + strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.421 kb on + strand at 713.421 kb on + strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.530 kb on + strand at 713.530 kb on + strand at 713.531 kb on - strand at 713.531 kb on - strand at 713.573 kb on + strand at 713.577 kb on + strand at 713.578 kb on - strand at 713.592 kb on + strand at 713.593 kb on - strand at 713.598 kb on + strand at 713.598 kb on + strand at 713.651 kb on + strand at 713.742 kb on - strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.826 kb on - strand at 713.829 kb on + strand at 713.830 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.838 kb on + strand at 713.848 kb on + strand at 713.848 kb on + strand at 713.848 kb on + strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.889 kb on + strand at 713.889 kb on + strand at 713.889 kb on + strand at 713.890 kb on - strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.893 kb on - strand at 713.893 kb on - strand at 713.893 kb on - strand at 713.893 kb on - strand at 714.061 kb on + strand, within AO356_03210 at 714.066 kb on + strand, within AO356_03210 at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.167 kb on - strand at 714.167 kb on - strand at 714.167 kb on - strand at 714.169 kb on + strand at 714.170 kb on - strand at 714.170 kb on - strand at 714.293 kb on + strand at 714.294 kb on - strand at 714.340 kb on - strand at 714.340 kb on - strand at 714.510 kb on + strand, within AO356_03215 at 714.511 kb on - strand, within AO356_03215 at 714.525 kb on - strand, within AO356_03215 at 714.554 kb on + strand, within AO356_03215 at 714.555 kb on - strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.614 kb on - strand, within AO356_03215 at 714.614 kb on - strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.935 kb on + strand, within AO356_03215 at 714.935 kb on + strand, within AO356_03215 at 714.936 kb on - strand, within AO356_03215 at 715.077 kb on - strand, within AO356_03215 at 715.077 kb on - strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.121 kb on + strand, within AO356_03215 at 715.121 kb on + strand, within AO356_03215 at 715.122 kb on - strand, within AO356_03215
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 712,948 - -0.4 712,948 - -1.0 713,037 + AO356_03205 0.13 -4.1 713,037 + AO356_03205 0.13 -1.7 713,037 + AO356_03205 0.13 -1.3 713,037 + AO356_03205 0.13 -2.0 713,037 + AO356_03205 0.13 -3.4 713,037 + AO356_03205 0.13 -1.4 713,037 + AO356_03205 0.13 -1.6 713,038 - AO356_03205 0.13 -2.1 713,038 - AO356_03205 0.13 -2.4 713,038 - AO356_03205 0.13 -2.9 713,038 - AO356_03205 0.13 -2.5 713,038 - AO356_03205 0.13 -2.0 713,038 - AO356_03205 0.13 -3.7 713,049 + AO356_03205 0.17 -0.7 713,049 + AO356_03205 0.17 -2.9 713,050 - AO356_03205 0.18 -1.8 713,050 - AO356_03205 0.18 -4.6 713,050 - AO356_03205 0.18 -1.1 713,073 + AO356_03205 0.26 -2.8 713,091 + AO356_03205 0.32 -1.2 713,091 + AO356_03205 0.32 +0.1 713,163 + AO356_03205 0.58 -3.9 713,163 + AO356_03205 0.58 -2.2 713,163 + AO356_03205 0.58 -3.1 713,164 - AO356_03205 0.58 -4.3 713,164 - AO356_03205 0.58 -2.7 713,164 - AO356_03205 0.58 -3.4 713,168 - AO356_03205 0.60 -1.4 713,168 - AO356_03205 0.60 -2.5 713,168 - AO356_03205 0.60 -3.7 713,195 - AO356_03205 0.69 -2.6 713,196 + AO356_03205 0.70 -3.0 713,196 + AO356_03205 0.70 -1.9 713,196 + AO356_03205 0.70 -2.8 713,196 + AO356_03205 0.70 -1.5 713,196 + AO356_03205 0.70 -0.8 713,196 + AO356_03205 0.70 -2.7 713,196 + AO356_03205 0.70 -3.8 713,197 - AO356_03205 0.70 -3.0 713,197 - AO356_03205 0.70 -1.5 713,197 - AO356_03205 0.70 -2.5 713,197 - AO356_03205 0.70 -0.3 713,197 - AO356_03205 0.70 -2.5 713,197 - AO356_03205 0.70 -2.3 713,197 - AO356_03205 0.70 -3.4 713,197 - AO356_03205 0.70 -0.3 713,197 - AO356_03205 0.70 -3.9 713,197 - AO356_03205 0.70 -2.6 713,197 - AO356_03205 0.70 -2.1 713,197 - AO356_03205 0.70 -0.7 713,205 + AO356_03205 0.73 -3.5 713,205 + AO356_03205 0.73 -2.7 713,205 + AO356_03205 0.73 -1.5 713,285 + -2.5 713,286 - -1.8 713,286 - -2.9 713,286 - -3.4 713,314 + -4.1 713,314 + -1.8 713,314 + -3.3 713,348 + -2.7 713,348 + -1.8 713,349 - +1.2 713,349 - -0.3 713,418 + -1.7 713,418 + -1.1 713,419 - +1.0 713,419 - +1.5 713,419 - +1.1 713,419 - -1.2 713,419 - -0.7 713,421 + -3.1 713,421 + -1.8 713,422 - +0.8 713,422 - -0.8 713,422 - -0.7 713,530 + -1.1 713,530 + -1.0 713,531 - +0.8 713,531 - -0.5 713,573 + -0.5 713,577 + -1.2 713,578 - +0.6 713,592 + +0.5 713,593 - -0.5 713,598 + +0.0 713,598 + -1.7 713,651 + -0.8 713,742 - -0.6 713,743 + +0.5 713,743 + +0.3 713,743 + +0.2 713,744 - +0.1 713,744 - -0.3 713,744 - +0.3 713,826 - -0.2 713,829 + -1.5 713,830 - +0.6 713,832 + -0.8 713,832 + -0.3 713,833 - -1.6 713,838 + -1.5 713,848 + -1.3 713,848 + -0.7 713,848 + -1.2 713,849 - -0.5 713,849 - -2.3 713,849 - -1.1 713,849 - -0.3 713,849 - +0.0 713,849 - -0.3 713,889 + -1.2 713,889 + -1.1 713,889 + +1.2 713,890 - +0.1 713,892 + -1.2 713,892 + -0.6 713,892 + -1.1 713,892 + -1.2 713,892 + -0.8 713,892 + -1.4 713,892 + -0.1 713,892 + -0.9 713,892 + -0.7 713,892 + -1.7 713,893 - +0.4 713,893 - +0.2 713,893 - +1.5 713,893 - +0.7 714,061 + AO356_03210 0.57 -1.3 714,066 + AO356_03210 0.59 -0.6 714,166 + -0.8 714,166 + -0.4 714,166 + -0.3 714,166 + +0.6 714,166 + +0.5 714,167 - +0.1 714,167 - -1.4 714,167 - +1.6 714,169 + -0.3 714,170 - -0.3 714,170 - -0.2 714,293 + -0.2 714,294 - -0.3 714,340 - -0.6 714,340 - +0.9 714,510 + AO356_03215 0.22 -1.2 714,511 - AO356_03215 0.23 -0.8 714,525 - AO356_03215 0.24 +0.0 714,554 + AO356_03215 0.27 +0.3 714,555 - AO356_03215 0.27 -0.7 714,613 + AO356_03215 0.33 -1.2 714,613 + AO356_03215 0.33 -1.3 714,613 + AO356_03215 0.33 +0.1 714,613 + AO356_03215 0.33 +0.7 714,613 + AO356_03215 0.33 -0.8 714,614 - AO356_03215 0.33 -0.2 714,614 - AO356_03215 0.33 -0.4 714,905 + AO356_03215 0.63 -0.2 714,905 + AO356_03215 0.63 -1.1 714,905 + AO356_03215 0.63 -0.5 714,905 + AO356_03215 0.63 -0.4 714,905 + AO356_03215 0.63 +0.4 714,906 - AO356_03215 0.63 +0.3 714,906 - AO356_03215 0.63 -1.0 714,906 - AO356_03215 0.63 +0.9 714,906 - AO356_03215 0.63 +0.1 714,906 - AO356_03215 0.63 -1.6 714,906 - AO356_03215 0.63 -0.5 714,932 + AO356_03215 0.66 -0.5 714,932 + AO356_03215 0.66 -0.5 714,932 + AO356_03215 0.66 -0.4 714,932 + AO356_03215 0.66 -1.1 714,932 + AO356_03215 0.66 +0.1 714,933 - AO356_03215 0.66 -1.0 714,933 - AO356_03215 0.66 -0.6 714,933 - AO356_03215 0.66 -0.2 714,935 + AO356_03215 0.66 -0.7 714,935 + AO356_03215 0.66 +0.0 714,936 - AO356_03215 0.66 -1.0 715,077 - AO356_03215 0.81 -0.6 715,077 - AO356_03215 0.81 -0.9 715,088 + AO356_03215 0.82 +1.5 715,088 + AO356_03215 0.82 +0.8 715,088 + AO356_03215 0.82 -0.0 715,088 + AO356_03215 0.82 +0.4 715,088 + AO356_03215 0.82 +0.6 715,088 + AO356_03215 0.82 -0.2 715,088 + AO356_03215 0.82 -0.0 715,088 + AO356_03215 0.82 -0.5 715,088 + AO356_03215 0.82 +0.5 715,088 + AO356_03215 0.82 +1.0 715,089 - AO356_03215 0.82 +0.0 715,089 - AO356_03215 0.82 +0.7 715,089 - AO356_03215 0.82 -0.2 715,089 - AO356_03215 0.82 +0.8 715,089 - AO356_03215 0.82 -0.9 715,089 - AO356_03215 0.82 +0.3 715,121 + AO356_03215 0.85 -0.3 715,121 + AO356_03215 0.85 -0.8 715,122 - AO356_03215 0.85 +1.1
Or see this region's nucleotide sequence