Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01795 and AO356_01800 are separated by 26 nucleotides AO356_01800 and AO356_01805 are separated by 140 nucleotides AO356_01805 and AO356_01810 overlap by 4 nucleotides
AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284
_01795
AO356_01800: AO356_01800 - hypothetical protein, at 403,311 to 403,562
_01800
AO356_01805: AO356_01805 - LysR family transcriptional regulator, at 403,703 to 404,599
_01805
AO356_01810: AO356_01810 - MFS transporter, at 404,596 to 405,756
_01810
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.154 kb on - strand, within AO356_01795 at 403.204 kb on + strand, within AO356_01795 at 403.205 kb on - strand, within AO356_01795 at 403.271 kb on - strand at 403.277 kb on + strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.555 kb on + strand at 403.555 kb on + strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.586 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.713 kb on - strand at 403.713 kb on - strand at 403.727 kb on + strand at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.834 kb on + strand, within AO356_01805 at 403.835 kb on - strand, within AO356_01805 at 403.905 kb on - strand, within AO356_01805 at 404.025 kb on - strand, within AO356_01805 at 404.466 kb on - strand, within AO356_01805 at 404.472 kb on + strand, within AO356_01805 at 404.472 kb on + strand, within AO356_01805 at 404.513 kb on + strand at 404.513 kb on + strand at 404.514 kb on - strand at 404.597 kb on + strand at 404.598 kb on - strand at 404.598 kb on - strand at 404.598 kb on - strand at 405.007 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.099 kb on - strand, within AO356_01810 at 405.227 kb on + strand, within AO356_01810 at 405.228 kb on - strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.232 kb on - strand, within AO356_01810 at 405.232 kb on - strand, within AO356_01810
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 403,154 - AO356_01795 0.83 +0.3 403,204 + AO356_01795 0.89 -2.4 403,205 - AO356_01795 0.89 -0.5 403,271 - +1.7 403,277 + +1.4 403,278 - -0.1 403,278 - -0.2 403,278 - +0.4 403,312 + +1.4 403,312 + +0.3 403,312 + +0.3 403,312 + -0.9 403,555 + +1.8 403,555 + +0.5 403,556 - -1.7 403,556 - +1.4 403,556 - -0.4 403,556 - -0.3 403,556 - +0.3 403,556 - -0.4 403,586 + +0.7 403,628 + -0.0 403,628 + -0.2 403,628 + -0.1 403,628 + +0.3 403,628 + -0.2 403,628 + +0.2 403,628 + -1.1 403,628 + -0.5 403,628 + -0.5 403,628 + -0.2 403,628 + +0.5 403,628 + +0.3 403,628 + -0.6 403,629 - -0.2 403,629 - +0.8 403,629 - -0.1 403,629 - -0.5 403,713 - -0.3 403,713 - -1.2 403,727 + -0.5 403,832 + AO356_01805 0.14 -0.0 403,832 + AO356_01805 0.14 +0.6 403,832 + AO356_01805 0.14 +0.4 403,832 + AO356_01805 0.14 +0.2 403,832 + AO356_01805 0.14 +0.9 403,832 + AO356_01805 0.14 +0.0 403,832 + AO356_01805 0.14 +0.8 403,832 + AO356_01805 0.14 +0.7 403,833 - AO356_01805 0.14 -0.5 403,833 - AO356_01805 0.14 -1.0 403,833 - AO356_01805 0.14 -0.1 403,833 - AO356_01805 0.14 +1.4 403,833 - AO356_01805 0.14 -0.5 403,834 + AO356_01805 0.15 +0.7 403,835 - AO356_01805 0.15 -1.1 403,905 - AO356_01805 0.23 +0.7 404,025 - AO356_01805 0.36 +0.9 404,466 - AO356_01805 0.85 +0.2 404,472 + AO356_01805 0.86 +0.6 404,472 + AO356_01805 0.86 -0.2 404,513 + +0.1 404,513 + -0.6 404,514 - -0.0 404,597 + -0.7 404,598 - -0.3 404,598 - +0.5 404,598 - +0.9 405,007 + AO356_01810 0.35 -0.3 405,092 + AO356_01810 0.43 +0.4 405,092 + AO356_01810 0.43 +0.2 405,092 + AO356_01810 0.43 +0.7 405,093 - AO356_01810 0.43 -0.3 405,093 - AO356_01810 0.43 +0.6 405,093 - AO356_01810 0.43 +1.4 405,093 - AO356_01810 0.43 +0.5 405,093 - AO356_01810 0.43 +0.7 405,093 - AO356_01810 0.43 +0.3 405,098 + AO356_01810 0.43 +0.2 405,098 + AO356_01810 0.43 +0.1 405,098 + AO356_01810 0.43 +1.6 405,099 - AO356_01810 0.43 -0.8 405,227 + AO356_01810 0.54 +0.2 405,228 - AO356_01810 0.54 +0.2 405,231 + AO356_01810 0.55 -0.6 405,231 + AO356_01810 0.55 +1.0 405,231 + AO356_01810 0.55 -0.4 405,232 - AO356_01810 0.55 +0.9 405,232 - AO356_01810 0.55 +1.0
Or see this region's nucleotide sequence