Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01085 and AO356_01090 are separated by 150 nucleotides AO356_01090 and AO356_01095 overlap by 1 nucleotides
AO356_01085: AO356_01085 - alpha/beta hydrolase, at 247,036 to 247,965
_01085
AO356_01090: AO356_01090 - glycolate oxidase subunit GlcD, at 248,116 to 249,615
_01090
AO356_01095: AO356_01095 - glycolate oxidase, at 249,615 to 250,673
_01095
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 247.213 kb on + strand, within AO356_01085 at 247.213 kb on + strand, within AO356_01085 at 247.213 kb on + strand, within AO356_01085 at 247.249 kb on + strand, within AO356_01085 at 247.249 kb on + strand, within AO356_01085 at 247.250 kb on - strand, within AO356_01085 at 247.624 kb on + strand, within AO356_01085 at 247.624 kb on + strand, within AO356_01085 at 247.625 kb on - strand, within AO356_01085 at 247.625 kb on - strand, within AO356_01085 at 247.625 kb on - strand, within AO356_01085 at 247.625 kb on - strand, within AO356_01085 at 247.690 kb on + strand, within AO356_01085 at 247.690 kb on + strand, within AO356_01085 at 247.691 kb on - strand, within AO356_01085 at 247.691 kb on - strand, within AO356_01085 at 247.694 kb on + strand, within AO356_01085 at 247.694 kb on + strand, within AO356_01085 at 247.694 kb on + strand, within AO356_01085 at 247.694 kb on + strand, within AO356_01085 at 247.694 kb on + strand, within AO356_01085 at 247.694 kb on + strand, within AO356_01085 at 247.695 kb on - strand, within AO356_01085 at 247.695 kb on - strand, within AO356_01085 at 247.695 kb on - strand, within AO356_01085 at 247.695 kb on - strand, within AO356_01085 at 247.695 kb on - strand, within AO356_01085 at 247.695 kb on - strand, within AO356_01085 at 247.724 kb on - strand, within AO356_01085 at 247.933 kb on + strand at 248.107 kb on - strand at 248.270 kb on - strand, within AO356_01090 at 248.542 kb on + strand, within AO356_01090 at 248.545 kb on + strand, within AO356_01090 at 248.629 kb on + strand, within AO356_01090 at 248.630 kb on - strand, within AO356_01090 at 249.166 kb on + strand, within AO356_01090 at 249.166 kb on + strand, within AO356_01090 at 249.169 kb on + strand, within AO356_01090 at 249.170 kb on - strand, within AO356_01090 at 249.170 kb on - strand, within AO356_01090 at 249.245 kb on - strand, within AO356_01090 at 249.751 kb on + strand, within AO356_01095 at 249.751 kb on + strand, within AO356_01095 at 249.786 kb on + strand, within AO356_01095 at 249.786 kb on + strand, within AO356_01095 at 250.594 kb on + strand at 250.594 kb on + strand at 250.595 kb on - strand at 250.595 kb on - strand at 250.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 247,213 + AO356_01085 0.19 +0.3 247,213 + AO356_01085 0.19 -0.3 247,213 + AO356_01085 0.19 +0.8 247,249 + AO356_01085 0.23 -0.6 247,249 + AO356_01085 0.23 -0.9 247,250 - AO356_01085 0.23 +0.7 247,624 + AO356_01085 0.63 +0.7 247,624 + AO356_01085 0.63 -0.5 247,625 - AO356_01085 0.63 -0.3 247,625 - AO356_01085 0.63 +0.3 247,625 - AO356_01085 0.63 +0.3 247,625 - AO356_01085 0.63 -0.9 247,690 + AO356_01085 0.70 -0.2 247,690 + AO356_01085 0.70 -1.0 247,691 - AO356_01085 0.70 -0.7 247,691 - AO356_01085 0.70 +0.3 247,694 + AO356_01085 0.71 -0.3 247,694 + AO356_01085 0.71 -0.6 247,694 + AO356_01085 0.71 -1.0 247,694 + AO356_01085 0.71 -0.5 247,694 + AO356_01085 0.71 +0.2 247,694 + AO356_01085 0.71 -0.7 247,695 - AO356_01085 0.71 +0.6 247,695 - AO356_01085 0.71 -0.9 247,695 - AO356_01085 0.71 -0.3 247,695 - AO356_01085 0.71 -0.5 247,695 - AO356_01085 0.71 -1.2 247,695 - AO356_01085 0.71 -0.1 247,724 - AO356_01085 0.74 -2.1 247,933 + +0.2 248,107 - -0.7 248,270 - AO356_01090 0.10 -0.5 248,542 + AO356_01090 0.28 -0.4 248,545 + AO356_01090 0.29 -0.5 248,629 + AO356_01090 0.34 +0.1 248,630 - AO356_01090 0.34 -0.5 249,166 + AO356_01090 0.70 +0.2 249,166 + AO356_01090 0.70 -0.2 249,169 + AO356_01090 0.70 +1.0 249,170 - AO356_01090 0.70 +0.2 249,170 - AO356_01090 0.70 +1.2 249,245 - AO356_01090 0.75 -0.7 249,751 + AO356_01095 0.13 +0.6 249,751 + AO356_01095 0.13 -0.2 249,786 + AO356_01095 0.16 +0.3 249,786 + AO356_01095 0.16 +0.6 250,594 + +0.0 250,594 + -0.0 250,595 - +0.6 250,595 - -0.9 250,599 + +0.1
Or see this region's nucleotide sequence