Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3633 and Dshi_3634 are separated by 149 nucleotides Dshi_3634 and Dshi_3635 are separated by 169 nucleotides Dshi_3635 and Dshi_3636 are separated by 124 nucleotides
Dshi_3633: Dshi_3633 - hypothetical protein (RefSeq), at 35,746 to 37,389
_3633
Dshi_3634: Dshi_3634 - hypothetical protein (RefSeq), at 37,539 to 37,766
_3634
Dshi_3635: Dshi_3635 - transcriptional regulator, XRE family (RefSeq), at 37,936 to 38,193
_3635
Dshi_3636: Dshi_3636 - hypothetical protein (RefSeq), at 38,318 to 38,611
_3636
Position (kb) 37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 36.562 kb on + strand, within Dshi_3633 at 36.562 kb on + strand, within Dshi_3633 at 36.562 kb on + strand, within Dshi_3633 at 36.562 kb on - strand, within Dshi_3633 at 36.571 kb on + strand, within Dshi_3633 at 36.571 kb on + strand, within Dshi_3633 at 36.571 kb on + strand, within Dshi_3633 at 36.571 kb on + strand, within Dshi_3633 at 36.579 kb on - strand, within Dshi_3633 at 36.579 kb on - strand, within Dshi_3633 at 36.579 kb on - strand, within Dshi_3633 at 36.579 kb on - strand, within Dshi_3633 at 36.581 kb on + strand, within Dshi_3633 at 36.588 kb on + strand, within Dshi_3633 at 36.596 kb on + strand, within Dshi_3633 at 36.612 kb on - strand, within Dshi_3633 at 36.627 kb on - strand, within Dshi_3633 at 36.641 kb on + strand, within Dshi_3633 at 36.653 kb on + strand, within Dshi_3633 at 36.655 kb on + strand, within Dshi_3633 at 36.692 kb on - strand, within Dshi_3633 at 36.694 kb on - strand, within Dshi_3633 at 36.717 kb on - strand, within Dshi_3633 at 36.748 kb on + strand, within Dshi_3633 at 36.756 kb on - strand, within Dshi_3633 at 36.780 kb on - strand, within Dshi_3633 at 36.780 kb on - strand, within Dshi_3633 at 36.811 kb on + strand, within Dshi_3633 at 36.811 kb on + strand, within Dshi_3633 at 36.811 kb on + strand, within Dshi_3633 at 36.811 kb on + strand, within Dshi_3633 at 36.812 kb on - strand, within Dshi_3633 at 36.816 kb on + strand, within Dshi_3633 at 36.819 kb on - strand, within Dshi_3633 at 36.819 kb on - strand, within Dshi_3633 at 36.819 kb on - strand, within Dshi_3633 at 36.821 kb on + strand, within Dshi_3633 at 36.827 kb on - strand, within Dshi_3633 at 36.884 kb on + strand, within Dshi_3633 at 36.884 kb on + strand, within Dshi_3633 at 36.892 kb on - strand, within Dshi_3633 at 36.892 kb on - strand, within Dshi_3633 at 36.905 kb on + strand, within Dshi_3633 at 36.905 kb on + strand, within Dshi_3633 at 36.927 kb on + strand, within Dshi_3633 at 36.935 kb on - strand, within Dshi_3633 at 36.936 kb on - strand, within Dshi_3633 at 36.949 kb on + strand, within Dshi_3633 at 36.955 kb on + strand, within Dshi_3633 at 36.958 kb on - strand, within Dshi_3633 at 36.968 kb on + strand, within Dshi_3633 at 36.974 kb on - strand, within Dshi_3633 at 37.010 kb on + strand, within Dshi_3633 at 37.018 kb on - strand, within Dshi_3633 at 37.018 kb on - strand, within Dshi_3633 at 37.051 kb on + strand, within Dshi_3633 at 37.052 kb on + strand, within Dshi_3633 at 37.061 kb on - strand, within Dshi_3633 at 37.064 kb on - strand, within Dshi_3633 at 37.107 kb on + strand, within Dshi_3633 at 37.115 kb on - strand, within Dshi_3633 at 37.117 kb on + strand, within Dshi_3633 at 37.125 kb on - strand, within Dshi_3633 at 37.125 kb on - strand, within Dshi_3633 at 37.125 kb on - strand, within Dshi_3633 at 37.139 kb on - strand, within Dshi_3633 at 37.140 kb on + strand, within Dshi_3633 at 37.150 kb on + strand, within Dshi_3633 at 37.151 kb on + strand, within Dshi_3633 at 37.159 kb on - strand, within Dshi_3633 at 37.167 kb on + strand, within Dshi_3633 at 37.208 kb on + strand, within Dshi_3633 at 37.209 kb on - strand, within Dshi_3633 at 37.216 kb on - strand, within Dshi_3633 at 37.244 kb on + strand at 37.252 kb on - strand at 37.252 kb on - strand at 37.335 kb on + strand at 37.343 kb on - strand at 37.348 kb on + strand at 37.384 kb on + strand at 37.392 kb on - strand at 37.392 kb on - strand at 37.392 kb on - strand at 37.446 kb on + strand at 37.469 kb on + strand at 37.469 kb on + strand at 37.479 kb on + strand at 37.482 kb on - strand at 37.482 kb on - strand at 37.494 kb on + strand at 37.506 kb on - strand at 37.507 kb on + strand at 37.507 kb on + strand at 37.507 kb on - strand at 37.512 kb on + strand at 37.512 kb on + strand at 37.512 kb on + strand at 37.512 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.520 kb on - strand at 37.530 kb on - strand at 37.537 kb on - strand at 37.605 kb on + strand, within Dshi_3634 at 37.605 kb on + strand, within Dshi_3634 at 37.605 kb on + strand, within Dshi_3634 at 37.610 kb on + strand, within Dshi_3634 at 37.634 kb on + strand, within Dshi_3634 at 37.642 kb on - strand, within Dshi_3634 at 37.647 kb on - strand, within Dshi_3634 at 37.659 kb on - strand, within Dshi_3634 at 37.659 kb on - strand, within Dshi_3634 at 37.672 kb on + strand, within Dshi_3634 at 37.675 kb on - strand, within Dshi_3634 at 37.680 kb on - strand, within Dshi_3634 at 37.680 kb on - strand, within Dshi_3634 at 37.683 kb on + strand, within Dshi_3634 at 37.702 kb on + strand, within Dshi_3634 at 37.703 kb on + strand, within Dshi_3634 at 37.715 kb on - strand, within Dshi_3634 at 37.717 kb on + strand, within Dshi_3634 at 37.717 kb on + strand, within Dshi_3634 at 37.720 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.725 kb on - strand, within Dshi_3634 at 37.743 kb on + strand, within Dshi_3634 at 37.743 kb on + strand, within Dshi_3634 at 37.744 kb on + strand at 37.750 kb on + strand at 37.750 kb on + strand at 37.752 kb on - strand at 37.752 kb on - strand at 37.752 kb on - strand at 37.758 kb on - strand at 37.777 kb on + strand at 37.786 kb on - strand at 37.786 kb on - strand at 37.786 kb on - strand at 37.794 kb on - strand at 37.811 kb on + strand at 37.811 kb on + strand at 37.811 kb on + strand at 37.819 kb on - strand at 37.819 kb on - strand at 37.819 kb on - strand at 37.821 kb on - strand at 37.821 kb on - strand at 37.826 kb on + strand at 37.826 kb on + strand at 37.826 kb on + strand at 37.829 kb on - strand at 37.829 kb on - strand at 37.834 kb on - strand at 37.834 kb on - strand at 37.834 kb on - strand at 37.879 kb on + strand at 37.885 kb on + strand at 37.907 kb on + strand at 37.972 kb on - strand, within Dshi_3635 at 37.972 kb on - strand, within Dshi_3635 at 37.982 kb on + strand, within Dshi_3635 at 37.990 kb on - strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 37.992 kb on + strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.000 kb on - strand, within Dshi_3635 at 38.019 kb on - strand, within Dshi_3635 at 38.092 kb on - strand, within Dshi_3635 at 38.093 kb on - strand, within Dshi_3635 at 38.107 kb on + strand, within Dshi_3635 at 38.107 kb on + strand, within Dshi_3635 at 38.113 kb on + strand, within Dshi_3635 at 38.115 kb on - strand, within Dshi_3635 at 38.115 kb on - strand, within Dshi_3635 at 38.118 kb on + strand, within Dshi_3635 at 38.145 kb on + strand, within Dshi_3635 at 38.148 kb on - strand, within Dshi_3635 at 38.153 kb on - strand, within Dshi_3635 at 38.167 kb on - strand, within Dshi_3635 at 38.277 kb on + strand at 38.286 kb on + strand at 38.288 kb on + strand at 38.294 kb on + strand at 38.294 kb on + strand at 38.296 kb on - strand at 38.298 kb on + strand at 38.302 kb on - strand at 38.302 kb on - strand at 38.345 kb on + strand at 38.358 kb on - strand, within Dshi_3636 at 38.362 kb on + strand, within Dshi_3636 at 38.364 kb on + strand, within Dshi_3636 at 38.371 kb on + strand, within Dshi_3636 at 38.380 kb on + strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.406 kb on - strand, within Dshi_3636 at 38.417 kb on + strand, within Dshi_3636 at 38.430 kb on - strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.432 kb on + strand, within Dshi_3636 at 38.440 kb on + strand, within Dshi_3636 at 38.456 kb on + strand, within Dshi_3636 at 38.472 kb on - strand, within Dshi_3636 at 38.474 kb on - strand, within Dshi_3636 at 38.520 kb on + strand, within Dshi_3636 at 38.537 kb on + strand, within Dshi_3636 at 38.541 kb on + strand, within Dshi_3636 at 38.570 kb on + strand, within Dshi_3636 at 38.572 kb on - strand, within Dshi_3636 at 38.588 kb on - strand at 38.590 kb on - strand at 38.590 kb on - strand at 38.613 kb on + strand at 38.615 kb on + strand at 38.623 kb on - strand at 38.636 kb on + strand at 38.644 kb on - strand at 38.651 kb on + strand at 38.651 kb on + strand at 38.741 kb on + strand at 38.741 kb on + strand at 38.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 36,562 + Dshi_3633 0.50 -0.3 36,562 + Dshi_3633 0.50 +0.2 36,562 + Dshi_3633 0.50 -0.7 36,562 - Dshi_3633 0.50 -1.7 36,571 + Dshi_3633 0.50 -0.4 36,571 + Dshi_3633 0.50 -1.1 36,571 + Dshi_3633 0.50 -2.0 36,571 + Dshi_3633 0.50 -0.7 36,579 - Dshi_3633 0.51 -0.2 36,579 - Dshi_3633 0.51 -1.0 36,579 - Dshi_3633 0.51 +0.2 36,579 - Dshi_3633 0.51 -0.8 36,581 + Dshi_3633 0.51 +0.1 36,588 + Dshi_3633 0.51 +0.8 36,596 + Dshi_3633 0.52 -2.4 36,612 - Dshi_3633 0.53 -0.0 36,627 - Dshi_3633 0.54 -1.7 36,641 + Dshi_3633 0.54 -1.0 36,653 + Dshi_3633 0.55 +0.1 36,655 + Dshi_3633 0.55 +0.5 36,692 - Dshi_3633 0.58 +0.1 36,694 - Dshi_3633 0.58 +0.7 36,717 - Dshi_3633 0.59 -0.7 36,748 + Dshi_3633 0.61 +1.4 36,756 - Dshi_3633 0.61 -0.4 36,780 - Dshi_3633 0.63 -0.5 36,780 - Dshi_3633 0.63 +0.3 36,811 + Dshi_3633 0.65 -0.8 36,811 + Dshi_3633 0.65 -0.1 36,811 + Dshi_3633 0.65 -0.1 36,811 + Dshi_3633 0.65 +0.7 36,812 - Dshi_3633 0.65 -0.1 36,816 + Dshi_3633 0.65 -0.3 36,819 - Dshi_3633 0.65 +0.2 36,819 - Dshi_3633 0.65 -0.4 36,819 - Dshi_3633 0.65 -0.5 36,821 + Dshi_3633 0.65 -2.4 36,827 - Dshi_3633 0.66 -0.7 36,884 + Dshi_3633 0.69 -0.3 36,884 + Dshi_3633 0.69 -1.9 36,892 - Dshi_3633 0.70 -0.2 36,892 - Dshi_3633 0.70 +0.6 36,905 + Dshi_3633 0.70 -0.5 36,905 + Dshi_3633 0.70 +0.3 36,927 + Dshi_3633 0.72 +0.0 36,935 - Dshi_3633 0.72 +0.6 36,936 - Dshi_3633 0.72 -1.4 36,949 + Dshi_3633 0.73 -0.2 36,955 + Dshi_3633 0.74 -0.3 36,958 - Dshi_3633 0.74 +0.2 36,968 + Dshi_3633 0.74 +1.5 36,974 - Dshi_3633 0.75 +0.0 37,010 + Dshi_3633 0.77 -0.8 37,018 - Dshi_3633 0.77 -0.7 37,018 - Dshi_3633 0.77 -1.4 37,051 + Dshi_3633 0.79 -0.9 37,052 + Dshi_3633 0.79 +2.9 37,061 - Dshi_3633 0.80 -0.7 37,064 - Dshi_3633 0.80 -0.1 37,107 + Dshi_3633 0.83 -0.6 37,115 - Dshi_3633 0.83 +0.0 37,117 + Dshi_3633 0.83 -0.6 37,125 - Dshi_3633 0.84 -0.7 37,125 - Dshi_3633 0.84 +0.2 37,125 - Dshi_3633 0.84 +0.2 37,139 - Dshi_3633 0.85 -0.4 37,140 + Dshi_3633 0.85 -0.1 37,150 + Dshi_3633 0.85 +0.1 37,151 + Dshi_3633 0.85 -0.7 37,159 - Dshi_3633 0.86 -1.0 37,167 + Dshi_3633 0.86 +1.6 37,208 + Dshi_3633 0.89 -0.3 37,209 - Dshi_3633 0.89 +0.1 37,216 - Dshi_3633 0.89 +0.1 37,244 + -0.5 37,252 - -0.3 37,252 - -0.2 37,335 + -0.2 37,343 - +0.2 37,348 + +0.8 37,384 + -0.2 37,392 - -1.2 37,392 - +0.5 37,392 - +1.0 37,446 + -0.4 37,469 + +0.5 37,469 + +0.3 37,479 + +0.1 37,482 - +1.0 37,482 - +0.4 37,494 + -0.4 37,506 - +0.5 37,507 + -0.7 37,507 + +0.9 37,507 - -0.2 37,512 + +0.1 37,512 + -0.8 37,512 + -0.2 37,512 - +0.2 37,520 - -0.1 37,520 - -0.1 37,520 - -0.3 37,520 - -0.3 37,520 - +0.7 37,520 - +1.6 37,520 - -0.5 37,530 - +0.2 37,537 - +0.7 37,605 + Dshi_3634 0.29 -0.4 37,605 + Dshi_3634 0.29 +1.7 37,605 + Dshi_3634 0.29 -1.1 37,610 + Dshi_3634 0.31 +0.0 37,634 + Dshi_3634 0.42 -0.6 37,642 - Dshi_3634 0.45 -0.2 37,647 - Dshi_3634 0.47 -0.7 37,659 - Dshi_3634 0.53 +0.0 37,659 - Dshi_3634 0.53 -0.6 37,672 + Dshi_3634 0.58 +0.1 37,675 - Dshi_3634 0.60 -0.0 37,680 - Dshi_3634 0.62 -1.1 37,680 - Dshi_3634 0.62 -0.4 37,683 + Dshi_3634 0.63 +0.1 37,702 + Dshi_3634 0.71 +0.2 37,703 + Dshi_3634 0.72 -0.1 37,715 - Dshi_3634 0.77 -2.2 37,717 + Dshi_3634 0.78 +0.9 37,717 + Dshi_3634 0.78 +1.1 37,720 - Dshi_3634 0.79 -1.1 37,725 - Dshi_3634 0.82 +0.4 37,725 - Dshi_3634 0.82 -0.5 37,725 - Dshi_3634 0.82 +1.1 37,743 + Dshi_3634 0.89 -0.8 37,743 + Dshi_3634 0.89 +0.3 37,744 + +0.5 37,750 + -0.2 37,750 + +1.1 37,752 - -0.3 37,752 - +0.4 37,752 - -0.0 37,758 - -0.2 37,777 + -0.6 37,786 - +1.0 37,786 - +0.2 37,786 - +0.7 37,794 - +0.1 37,811 + -0.5 37,811 + +1.1 37,811 + +0.9 37,819 - +0.1 37,819 - -2.5 37,819 - -0.7 37,821 - +0.5 37,821 - +0.6 37,826 + +0.1 37,826 + +0.1 37,826 + +0.2 37,829 - +0.7 37,829 - +0.4 37,834 - +0.0 37,834 - -0.2 37,834 - -0.4 37,879 + +0.1 37,885 + +0.3 37,907 + +1.8 37,972 - Dshi_3635 0.14 +1.2 37,972 - Dshi_3635 0.14 -0.9 37,982 + Dshi_3635 0.18 -2.2 37,990 - Dshi_3635 0.21 +1.1 37,992 + Dshi_3635 0.22 +0.4 37,992 + Dshi_3635 0.22 +0.1 37,992 + Dshi_3635 0.22 -0.5 37,992 + Dshi_3635 0.22 -1.5 37,992 + Dshi_3635 0.22 -0.9 37,992 + Dshi_3635 0.22 +0.4 37,992 + Dshi_3635 0.22 +0.1 37,992 + Dshi_3635 0.22 +0.5 37,992 + Dshi_3635 0.22 -0.4 37,992 + Dshi_3635 0.22 +0.5 38,000 - Dshi_3635 0.25 +0.1 38,000 - Dshi_3635 0.25 +0.6 38,000 - Dshi_3635 0.25 -0.4 38,000 - Dshi_3635 0.25 +0.5 38,000 - Dshi_3635 0.25 +0.4 38,000 - Dshi_3635 0.25 +0.3 38,000 - Dshi_3635 0.25 +0.1 38,019 - Dshi_3635 0.32 +0.1 38,092 - Dshi_3635 0.60 +0.4 38,093 - Dshi_3635 0.61 +1.5 38,107 + Dshi_3635 0.66 -0.0 38,107 + Dshi_3635 0.66 +0.6 38,113 + Dshi_3635 0.69 -0.2 38,115 - Dshi_3635 0.69 -0.2 38,115 - Dshi_3635 0.69 +0.6 38,118 + Dshi_3635 0.71 -0.3 38,145 + Dshi_3635 0.81 -2.0 38,148 - Dshi_3635 0.82 +0.0 38,153 - Dshi_3635 0.84 +0.6 38,167 - Dshi_3635 0.90 +0.1 38,277 + +0.1 38,286 + -0.3 38,288 + +0.7 38,294 + +0.9 38,294 + +0.4 38,296 - -0.2 38,298 + +0.7 38,302 - -0.3 38,302 - +0.7 38,345 + -0.4 38,358 - Dshi_3636 0.14 -0.4 38,362 + Dshi_3636 0.15 +0.8 38,364 + Dshi_3636 0.16 -0.2 38,371 + Dshi_3636 0.18 -0.6 38,380 + Dshi_3636 0.21 -0.4 38,406 - Dshi_3636 0.30 -0.4 38,406 - Dshi_3636 0.30 -0.5 38,406 - Dshi_3636 0.30 +0.8 38,417 + Dshi_3636 0.34 -1.1 38,430 - Dshi_3636 0.38 +0.3 38,432 + Dshi_3636 0.39 +0.1 38,432 + Dshi_3636 0.39 -0.3 38,432 + Dshi_3636 0.39 +0.3 38,432 + Dshi_3636 0.39 -0.1 38,432 + Dshi_3636 0.39 +0.1 38,440 + Dshi_3636 0.41 +0.0 38,456 + Dshi_3636 0.47 -0.6 38,472 - Dshi_3636 0.52 +0.1 38,474 - Dshi_3636 0.53 +0.4 38,520 + Dshi_3636 0.69 -2.2 38,537 + Dshi_3636 0.74 +0.9 38,541 + Dshi_3636 0.76 +0.4 38,570 + Dshi_3636 0.86 +0.4 38,572 - Dshi_3636 0.86 -1.7 38,588 - +1.7 38,590 - -1.2 38,590 - -0.3 38,613 + -1.3 38,615 + -0.3 38,623 - -0.5 38,636 + -0.7 38,644 - -4.4 38,651 + -0.6 38,651 + -2.5 38,741 + -0.1 38,741 + -0.8 38,741 + -0.9
Or see this region's nucleotide sequence