Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2947

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2946 and Dshi_2947 are separated by 76 nucleotidesDshi_2947 and Dshi_2948 are separated by 88 nucleotides Dshi_2946: Dshi_2946 - histidinol-phosphate aminotransferase (RefSeq), at 3,105,385 to 3,106,470 _2946 Dshi_2947: Dshi_2947 - Homospermidine synthase (RefSeq), at 3,106,547 to 3,107,965 _2947 Dshi_2948: Dshi_2948 - RNA-binding S4 domain protein (RefSeq), at 3,108,054 to 3,108,674 _2948 Position (kb) 3106 3107 3108Strain fitness (log2 ratio) -1 0 1at 3107.553 kb on + strand, within Dshi_2947at 3108.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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3,107,553 + Dshi_2947 0.71 +0.7
3,108,005 - +0.1

Or see this region's nucleotide sequence