Experiment: D-Raffinose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS05965 and LRK54_RS05970 are separated by 196 nucleotides LRK54_RS05970 and LRK54_RS05975 are separated by 11 nucleotides LRK54_RS05975 and LRK54_RS05980 are separated by 18 nucleotides
LRK54_RS05965: LRK54_RS05965 - biotin--[acetyl-CoA-carboxylase] ligase, at 1,283,747 to 1,284,736
_RS05965
LRK54_RS05970: LRK54_RS05970 - hypothetical protein, at 1,284,933 to 1,285,256
_RS05970
LRK54_RS05975: LRK54_RS05975 - zinc-dependent peptidase, at 1,285,268 to 1,286,062
_RS05975
LRK54_RS05980: LRK54_RS05980 - ATP-binding protein, at 1,286,081 to 1,287,502
_RS05980
Position (kb) 1285
1286
1287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1284.818 kb on + strand at 1284.818 kb on + strand at 1284.818 kb on + strand at 1284.818 kb on + strand at 1284.818 kb on + strand at 1284.818 kb on + strand at 1284.819 kb on - strand at 1284.819 kb on - strand at 1284.819 kb on - strand at 1284.870 kb on + strand at 1284.870 kb on + strand at 1284.871 kb on - strand at 1284.954 kb on - strand at 1284.954 kb on - strand at 1284.954 kb on - strand at 1285.139 kb on + strand, within LRK54_RS05970 at 1285.139 kb on + strand, within LRK54_RS05970 at 1285.139 kb on + strand, within LRK54_RS05970 at 1285.139 kb on + strand, within LRK54_RS05970 at 1285.139 kb on + strand, within LRK54_RS05970 at 1285.139 kb on + strand, within LRK54_RS05970 at 1285.140 kb on - strand, within LRK54_RS05970 at 1285.140 kb on - strand, within LRK54_RS05970 at 1285.140 kb on - strand, within LRK54_RS05970 at 1285.140 kb on - strand, within LRK54_RS05970 at 1285.140 kb on - strand, within LRK54_RS05970 at 1285.140 kb on - strand, within LRK54_RS05970 at 1285.142 kb on - strand, within LRK54_RS05970 at 1285.469 kb on + strand, within LRK54_RS05975 at 1285.469 kb on + strand, within LRK54_RS05975 at 1285.469 kb on + strand, within LRK54_RS05975 at 1285.469 kb on + strand, within LRK54_RS05975 at 1285.469 kb on + strand, within LRK54_RS05975 at 1285.469 kb on + strand, within LRK54_RS05975 at 1285.469 kb on + strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.470 kb on - strand, within LRK54_RS05975 at 1285.559 kb on + strand, within LRK54_RS05975 at 1285.559 kb on + strand, within LRK54_RS05975 at 1285.559 kb on + strand, within LRK54_RS05975 at 1285.560 kb on - strand, within LRK54_RS05975 at 1285.560 kb on - strand, within LRK54_RS05975 at 1285.560 kb on - strand, within LRK54_RS05975 at 1285.560 kb on - strand, within LRK54_RS05975 at 1285.718 kb on + strand, within LRK54_RS05975 at 1285.718 kb on + strand, within LRK54_RS05975 at 1285.718 kb on + strand, within LRK54_RS05975 at 1285.718 kb on + strand, within LRK54_RS05975 at 1285.718 kb on + strand, within LRK54_RS05975 at 1285.718 kb on + strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.719 kb on - strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.838 kb on + strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.839 kb on - strand, within LRK54_RS05975 at 1285.892 kb on + strand, within LRK54_RS05975 at 1285.892 kb on + strand, within LRK54_RS05975 at 1285.892 kb on + strand, within LRK54_RS05975 at 1285.892 kb on + strand, within LRK54_RS05975 at 1285.892 kb on + strand, within LRK54_RS05975 at 1285.892 kb on + strand, within LRK54_RS05975 at 1285.892 kb on + strand, within LRK54_RS05975 at 1285.893 kb on - strand, within LRK54_RS05975 at 1285.893 kb on - strand, within LRK54_RS05975 at 1285.893 kb on - strand, within LRK54_RS05975 at 1285.893 kb on - strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.916 kb on + strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.917 kb on - strand, within LRK54_RS05975 at 1285.943 kb on + strand, within LRK54_RS05975 at 1285.943 kb on + strand, within LRK54_RS05975 at 1285.943 kb on + strand, within LRK54_RS05975 at 1285.944 kb on - strand, within LRK54_RS05975 at 1285.944 kb on - strand, within LRK54_RS05975 at 1285.944 kb on - strand, within LRK54_RS05975 at 1285.944 kb on - strand, within LRK54_RS05975 at 1285.944 kb on - strand, within LRK54_RS05975 at 1285.944 kb on - strand, within LRK54_RS05975 at 1285.944 kb on - strand, within LRK54_RS05975 at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.003 kb on + strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.004 kb on - strand at 1286.006 kb on + strand at 1286.006 kb on + strand at 1286.006 kb on + strand at 1286.006 kb on + strand at 1286.006 kb on + strand at 1286.006 kb on + strand at 1286.006 kb on + strand at 1286.006 kb on + strand at 1286.007 kb on - strand at 1286.007 kb on - strand at 1286.007 kb on - strand at 1286.007 kb on - strand at 1286.007 kb on - strand at 1286.007 kb on - strand at 1286.158 kb on - strand at 1286.240 kb on + strand, within LRK54_RS05980 at 1286.240 kb on + strand, within LRK54_RS05980 at 1286.240 kb on + strand, within LRK54_RS05980 at 1286.241 kb on - strand, within LRK54_RS05980 at 1286.424 kb on + strand, within LRK54_RS05980 at 1286.478 kb on + strand, within LRK54_RS05980 at 1286.478 kb on + strand, within LRK54_RS05980 at 1286.478 kb on + strand, within LRK54_RS05980 at 1286.479 kb on - strand, within LRK54_RS05980 at 1286.479 kb on - strand, within LRK54_RS05980 at 1286.722 kb on + strand, within LRK54_RS05980 at 1286.722 kb on + strand, within LRK54_RS05980 at 1286.953 kb on + strand, within LRK54_RS05980 at 1286.954 kb on - strand, within LRK54_RS05980 at 1287.058 kb on - strand, within LRK54_RS05980 at 1287.058 kb on - strand, within LRK54_RS05980
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 20 mM remove 1,284,818 + -0.6 1,284,818 + +1.0 1,284,818 + -0.9 1,284,818 + +0.1 1,284,818 + +0.2 1,284,818 + -0.7 1,284,819 - +0.6 1,284,819 - +0.1 1,284,819 - -1.4 1,284,870 + -0.1 1,284,870 + -1.7 1,284,871 - +0.5 1,284,954 - -0.2 1,284,954 - -0.9 1,284,954 - -1.1 1,285,139 + LRK54_RS05970 0.64 -0.8 1,285,139 + LRK54_RS05970 0.64 -2.2 1,285,139 + LRK54_RS05970 0.64 -0.5 1,285,139 + LRK54_RS05970 0.64 -1.0 1,285,139 + LRK54_RS05970 0.64 -0.7 1,285,139 + LRK54_RS05970 0.64 -1.6 1,285,140 - LRK54_RS05970 0.64 +0.3 1,285,140 - LRK54_RS05970 0.64 -0.2 1,285,140 - LRK54_RS05970 0.64 -0.9 1,285,140 - LRK54_RS05970 0.64 -2.0 1,285,140 - LRK54_RS05970 0.64 -0.0 1,285,140 - LRK54_RS05970 0.64 -1.0 1,285,142 - LRK54_RS05970 0.65 -2.4 1,285,469 + LRK54_RS05975 0.25 +0.9 1,285,469 + LRK54_RS05975 0.25 +0.0 1,285,469 + LRK54_RS05975 0.25 -2.1 1,285,469 + LRK54_RS05975 0.25 -0.8 1,285,469 + LRK54_RS05975 0.25 +0.5 1,285,469 + LRK54_RS05975 0.25 -1.0 1,285,469 + LRK54_RS05975 0.25 +0.9 1,285,470 - LRK54_RS05975 0.25 +0.3 1,285,470 - LRK54_RS05975 0.25 +0.9 1,285,470 - LRK54_RS05975 0.25 -1.1 1,285,470 - LRK54_RS05975 0.25 -0.8 1,285,470 - LRK54_RS05975 0.25 +1.9 1,285,470 - LRK54_RS05975 0.25 +1.1 1,285,470 - LRK54_RS05975 0.25 -0.4 1,285,470 - LRK54_RS05975 0.25 +0.6 1,285,559 + LRK54_RS05975 0.37 -0.9 1,285,559 + LRK54_RS05975 0.37 +0.3 1,285,559 + LRK54_RS05975 0.37 +0.2 1,285,560 - LRK54_RS05975 0.37 -0.2 1,285,560 - LRK54_RS05975 0.37 +1.3 1,285,560 - LRK54_RS05975 0.37 -0.9 1,285,560 - LRK54_RS05975 0.37 -0.0 1,285,718 + LRK54_RS05975 0.57 +0.5 1,285,718 + LRK54_RS05975 0.57 +0.8 1,285,718 + LRK54_RS05975 0.57 -0.1 1,285,718 + LRK54_RS05975 0.57 +1.3 1,285,718 + LRK54_RS05975 0.57 -0.6 1,285,718 + LRK54_RS05975 0.57 -0.9 1,285,719 - LRK54_RS05975 0.57 +0.2 1,285,719 - LRK54_RS05975 0.57 -1.7 1,285,719 - LRK54_RS05975 0.57 -0.5 1,285,719 - LRK54_RS05975 0.57 +0.2 1,285,719 - LRK54_RS05975 0.57 +1.9 1,285,719 - LRK54_RS05975 0.57 -1.6 1,285,719 - LRK54_RS05975 0.57 -0.2 1,285,719 - LRK54_RS05975 0.57 -0.6 1,285,719 - LRK54_RS05975 0.57 +1.1 1,285,719 - LRK54_RS05975 0.57 -0.4 1,285,719 - LRK54_RS05975 0.57 -1.4 1,285,838 + LRK54_RS05975 0.72 -1.3 1,285,838 + LRK54_RS05975 0.72 +0.1 1,285,838 + LRK54_RS05975 0.72 +0.4 1,285,838 + LRK54_RS05975 0.72 +0.9 1,285,838 + LRK54_RS05975 0.72 +0.0 1,285,838 + LRK54_RS05975 0.72 -0.5 1,285,838 + LRK54_RS05975 0.72 -0.1 1,285,838 + LRK54_RS05975 0.72 -1.1 1,285,839 - LRK54_RS05975 0.72 +0.2 1,285,839 - LRK54_RS05975 0.72 -0.1 1,285,839 - LRK54_RS05975 0.72 +0.6 1,285,839 - LRK54_RS05975 0.72 -0.4 1,285,839 - LRK54_RS05975 0.72 +0.5 1,285,839 - LRK54_RS05975 0.72 -0.1 1,285,839 - LRK54_RS05975 0.72 -0.9 1,285,839 - LRK54_RS05975 0.72 -0.7 1,285,839 - LRK54_RS05975 0.72 -1.4 1,285,839 - LRK54_RS05975 0.72 +0.2 1,285,839 - LRK54_RS05975 0.72 -0.5 1,285,839 - LRK54_RS05975 0.72 -0.1 1,285,892 + LRK54_RS05975 0.78 -0.6 1,285,892 + LRK54_RS05975 0.78 -0.7 1,285,892 + LRK54_RS05975 0.78 -0.0 1,285,892 + LRK54_RS05975 0.78 +0.9 1,285,892 + LRK54_RS05975 0.78 +0.2 1,285,892 + LRK54_RS05975 0.78 +1.5 1,285,892 + LRK54_RS05975 0.78 -0.4 1,285,893 - LRK54_RS05975 0.79 -0.4 1,285,893 - LRK54_RS05975 0.79 +0.3 1,285,893 - LRK54_RS05975 0.79 -0.4 1,285,893 - LRK54_RS05975 0.79 +1.6 1,285,916 + LRK54_RS05975 0.82 -0.4 1,285,916 + LRK54_RS05975 0.82 -1.3 1,285,916 + LRK54_RS05975 0.82 +0.2 1,285,916 + LRK54_RS05975 0.82 +0.9 1,285,916 + LRK54_RS05975 0.82 +0.7 1,285,916 + LRK54_RS05975 0.82 -2.4 1,285,916 + LRK54_RS05975 0.82 +1.1 1,285,916 + LRK54_RS05975 0.82 -2.0 1,285,916 + LRK54_RS05975 0.82 -0.5 1,285,917 - LRK54_RS05975 0.82 +0.6 1,285,917 - LRK54_RS05975 0.82 -0.0 1,285,917 - LRK54_RS05975 0.82 -0.3 1,285,917 - LRK54_RS05975 0.82 -1.2 1,285,917 - LRK54_RS05975 0.82 -0.9 1,285,917 - LRK54_RS05975 0.82 +2.6 1,285,917 - LRK54_RS05975 0.82 -1.1 1,285,917 - LRK54_RS05975 0.82 +0.4 1,285,943 + LRK54_RS05975 0.85 +0.3 1,285,943 + LRK54_RS05975 0.85 -0.9 1,285,943 + LRK54_RS05975 0.85 +0.4 1,285,944 - LRK54_RS05975 0.85 -1.8 1,285,944 - LRK54_RS05975 0.85 -0.3 1,285,944 - LRK54_RS05975 0.85 -3.5 1,285,944 - LRK54_RS05975 0.85 -0.2 1,285,944 - LRK54_RS05975 0.85 -0.1 1,285,944 - LRK54_RS05975 0.85 -1.1 1,285,944 - LRK54_RS05975 0.85 -0.1 1,286,003 + +0.3 1,286,003 + -0.3 1,286,003 + -0.8 1,286,003 + -0.1 1,286,003 + -1.0 1,286,003 + -2.0 1,286,003 + -1.4 1,286,003 + -0.3 1,286,003 + -0.5 1,286,003 + -0.7 1,286,003 + +0.6 1,286,003 + -0.3 1,286,003 + +0.6 1,286,004 - -0.9 1,286,004 - -1.0 1,286,004 - +0.6 1,286,004 - +0.9 1,286,004 - -0.1 1,286,004 - -0.4 1,286,004 - -0.5 1,286,004 - -0.7 1,286,004 - +0.0 1,286,004 - -0.4 1,286,004 - -1.4 1,286,004 - +0.7 1,286,006 + -2.9 1,286,006 + -0.8 1,286,006 + -0.4 1,286,006 + -0.1 1,286,006 + +1.9 1,286,006 + -1.1 1,286,006 + +0.9 1,286,006 + -1.8 1,286,007 - +0.3 1,286,007 - +0.4 1,286,007 - +0.1 1,286,007 - -1.4 1,286,007 - -0.7 1,286,007 - +0.3 1,286,158 - +0.3 1,286,240 + LRK54_RS05980 0.11 -1.1 1,286,240 + LRK54_RS05980 0.11 -0.7 1,286,240 + LRK54_RS05980 0.11 +0.9 1,286,241 - LRK54_RS05980 0.11 +0.9 1,286,424 + LRK54_RS05980 0.24 -0.4 1,286,478 + LRK54_RS05980 0.28 -0.1 1,286,478 + LRK54_RS05980 0.28 -1.6 1,286,478 + LRK54_RS05980 0.28 +0.3 1,286,479 - LRK54_RS05980 0.28 +0.3 1,286,479 - LRK54_RS05980 0.28 -0.9 1,286,722 + LRK54_RS05980 0.45 -0.9 1,286,722 + LRK54_RS05980 0.45 -0.4 1,286,953 + LRK54_RS05980 0.61 -1.3 1,286,954 - LRK54_RS05980 0.61 -0.9 1,287,058 - LRK54_RS05980 0.69 -0.4 1,287,058 - LRK54_RS05980 0.69 -0.1
Or see this region's nucleotide sequence