Experiment: D-Raffinose 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04255 and LRK54_RS04260 are separated by 368 nucleotides LRK54_RS04260 and LRK54_RS04265 overlap by 4 nucleotides
LRK54_RS04255: LRK54_RS04255 - type IV pilus twitching motility protein PilT, at 902,013 to 903,050
_RS04255
LRK54_RS04260: LRK54_RS04260 - pyrroline-5-carboxylate reductase, at 903,419 to 904,243
_RS04260
LRK54_RS04265: LRK54_RS04265 - YggT family protein, at 904,240 to 904,815
_RS04265
Position (kb) 903
904
905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 902.455 kb on + strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.455 kb on + strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.456 kb on - strand, within LRK54_RS04255 at 902.596 kb on + strand, within LRK54_RS04255 at 902.596 kb on + strand, within LRK54_RS04255 at 902.597 kb on - strand, within LRK54_RS04255 at 902.597 kb on - strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.851 kb on + strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.852 kb on - strand, within LRK54_RS04255 at 902.863 kb on + strand, within LRK54_RS04255 at 902.863 kb on + strand, within LRK54_RS04255 at 902.864 kb on - strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.896 kb on + strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 902.897 kb on - strand, within LRK54_RS04255 at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.095 kb on + strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.096 kb on - strand at 903.182 kb on + strand at 903.182 kb on + strand at 903.182 kb on + strand at 903.183 kb on - strand at 903.183 kb on - strand at 903.200 kb on - strand at 903.211 kb on + strand at 903.211 kb on + strand at 903.212 kb on - strand at 903.214 kb on + strand at 903.214 kb on + strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.215 kb on - strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.389 kb on + strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.390 kb on - strand at 903.572 kb on + strand, within LRK54_RS04260 at 903.573 kb on - strand, within LRK54_RS04260 at 903.573 kb on - strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.950 kb on + strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 903.951 kb on - strand, within LRK54_RS04260 at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.246 kb on + strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.247 kb on - strand at 904.373 kb on - strand, within LRK54_RS04265 at 904.576 kb on + strand, within LRK54_RS04265 at 904.576 kb on + strand, within LRK54_RS04265 at 904.576 kb on + strand, within LRK54_RS04265 at 904.576 kb on + strand, within LRK54_RS04265 at 904.576 kb on + strand, within LRK54_RS04265 at 904.576 kb on + strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.577 kb on - strand, within LRK54_RS04265 at 904.832 kb on - strand at 904.832 kb on - strand at 904.905 kb on - strand at 904.905 kb on - strand at 904.905 kb on - strand at 904.905 kb on - strand at 904.905 kb on - strand at 904.905 kb on - strand at 905.117 kb on - strand at 905.117 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 20 mM remove 902,455 + LRK54_RS04255 0.43 +0.8 902,455 + LRK54_RS04255 0.43 -0.2 902,455 + LRK54_RS04255 0.43 +2.1 902,456 - LRK54_RS04255 0.43 +1.8 902,456 - LRK54_RS04255 0.43 +1.2 902,456 - LRK54_RS04255 0.43 -0.1 902,456 - LRK54_RS04255 0.43 +1.8 902,456 - LRK54_RS04255 0.43 +0.4 902,456 - LRK54_RS04255 0.43 +2.3 902,456 - LRK54_RS04255 0.43 +2.1 902,456 - LRK54_RS04255 0.43 +1.8 902,456 - LRK54_RS04255 0.43 +1.5 902,596 + LRK54_RS04255 0.56 +1.0 902,596 + LRK54_RS04255 0.56 +2.4 902,597 - LRK54_RS04255 0.56 +1.8 902,597 - LRK54_RS04255 0.56 +1.6 902,851 + LRK54_RS04255 0.81 +2.4 902,851 + LRK54_RS04255 0.81 +1.0 902,851 + LRK54_RS04255 0.81 -0.2 902,851 + LRK54_RS04255 0.81 +1.7 902,851 + LRK54_RS04255 0.81 +2.4 902,851 + LRK54_RS04255 0.81 -0.2 902,851 + LRK54_RS04255 0.81 +0.8 902,852 - LRK54_RS04255 0.81 +0.8 902,852 - LRK54_RS04255 0.81 +1.4 902,852 - LRK54_RS04255 0.81 -0.2 902,852 - LRK54_RS04255 0.81 +0.4 902,852 - LRK54_RS04255 0.81 +0.9 902,852 - LRK54_RS04255 0.81 +1.0 902,863 + LRK54_RS04255 0.82 +1.7 902,863 + LRK54_RS04255 0.82 -0.5 902,864 - LRK54_RS04255 0.82 +1.3 902,896 + LRK54_RS04255 0.85 +1.5 902,896 + LRK54_RS04255 0.85 +2.2 902,896 + LRK54_RS04255 0.85 +0.4 902,896 + LRK54_RS04255 0.85 +1.3 902,896 + LRK54_RS04255 0.85 +1.4 902,897 - LRK54_RS04255 0.85 +1.4 902,897 - LRK54_RS04255 0.85 +0.2 902,897 - LRK54_RS04255 0.85 +1.9 902,897 - LRK54_RS04255 0.85 +1.5 902,897 - LRK54_RS04255 0.85 +1.8 902,897 - LRK54_RS04255 0.85 +2.3 902,897 - LRK54_RS04255 0.85 +0.0 903,095 + +0.1 903,095 + +0.2 903,095 + +0.7 903,095 + -1.2 903,095 + -1.0 903,095 + -0.1 903,095 + +1.4 903,095 + -0.7 903,095 + -1.5 903,096 - -0.4 903,096 - -0.8 903,096 - +1.2 903,096 - -0.8 903,096 - -0.5 903,096 - +0.2 903,182 + -1.0 903,182 + +0.8 903,182 + -1.7 903,183 - -2.2 903,183 - -0.8 903,200 - +0.6 903,211 + +0.2 903,211 + +0.2 903,212 - +0.4 903,214 + +1.0 903,214 + -0.7 903,215 - +0.0 903,215 - -0.7 903,215 - -0.9 903,215 - -0.3 903,215 - +0.4 903,215 - -0.3 903,215 - -0.7 903,215 - -0.2 903,215 - -1.0 903,389 + -0.1 903,389 + -0.4 903,389 + -0.6 903,389 + +1.7 903,389 + +0.3 903,389 + +2.0 903,389 + +0.1 903,389 + -0.6 903,389 + -0.6 903,389 + +1.8 903,389 + +2.0 903,389 + -0.2 903,389 + -0.2 903,389 + -0.7 903,389 + +0.8 903,389 + -0.7 903,389 + -0.3 903,389 + -1.8 903,389 + -1.1 903,389 + -0.8 903,389 + +0.0 903,389 + -0.2 903,389 + +0.1 903,389 + +0.1 903,390 - +0.7 903,390 - +0.6 903,390 - -0.2 903,390 - -1.2 903,390 - +0.2 903,390 - +1.0 903,390 - +0.2 903,390 - -0.6 903,390 - +0.4 903,390 - +1.5 903,390 - -1.9 903,390 - -0.1 903,390 - +1.8 903,390 - -0.2 903,390 - +0.8 903,390 - -0.4 903,390 - +0.7 903,390 - -1.2 903,390 - -0.1 903,390 - -1.2 903,390 - -0.1 903,390 - +0.6 903,390 - -1.0 903,390 - +0.2 903,390 - -0.5 903,390 - +0.2 903,390 - -1.0 903,390 - -0.8 903,390 - +0.2 903,390 - -2.0 903,390 - +1.0 903,572 + LRK54_RS04260 0.19 -0.5 903,573 - LRK54_RS04260 0.19 -2.3 903,573 - LRK54_RS04260 0.19 -2.4 903,950 + LRK54_RS04260 0.64 -2.2 903,950 + LRK54_RS04260 0.64 -3.4 903,950 + LRK54_RS04260 0.64 -2.4 903,950 + LRK54_RS04260 0.64 -1.5 903,950 + LRK54_RS04260 0.64 -3.6 903,950 + LRK54_RS04260 0.64 -0.8 903,951 - LRK54_RS04260 0.64 -4.0 903,951 - LRK54_RS04260 0.64 -2.0 903,951 - LRK54_RS04260 0.64 -2.6 903,951 - LRK54_RS04260 0.64 -3.8 904,246 + -1.2 904,246 + +1.8 904,246 + +1.1 904,246 + -0.2 904,246 + +1.4 904,246 + -1.0 904,246 + +0.0 904,246 + +0.5 904,246 + +1.2 904,246 + +0.5 904,246 + -0.7 904,246 + +0.6 904,246 + +1.3 904,246 + -0.7 904,246 + -0.1 904,246 + +0.6 904,247 - -0.0 904,247 - +0.4 904,247 - +0.4 904,247 - -1.4 904,247 - -0.9 904,247 - -0.6 904,247 - -0.7 904,247 - -0.2 904,247 - -1.0 904,247 - +0.1 904,247 - +1.0 904,247 - -1.8 904,247 - +2.3 904,373 - LRK54_RS04265 0.23 -0.2 904,576 + LRK54_RS04265 0.58 +0.5 904,576 + LRK54_RS04265 0.58 -0.8 904,576 + LRK54_RS04265 0.58 -0.2 904,576 + LRK54_RS04265 0.58 +0.9 904,576 + LRK54_RS04265 0.58 -0.0 904,576 + LRK54_RS04265 0.58 -1.6 904,577 - LRK54_RS04265 0.59 -1.2 904,577 - LRK54_RS04265 0.59 +0.2 904,577 - LRK54_RS04265 0.59 -0.6 904,577 - LRK54_RS04265 0.59 -0.7 904,577 - LRK54_RS04265 0.59 -1.2 904,577 - LRK54_RS04265 0.59 +0.8 904,577 - LRK54_RS04265 0.59 -0.7 904,577 - LRK54_RS04265 0.59 -0.4 904,577 - LRK54_RS04265 0.59 -0.1 904,577 - LRK54_RS04265 0.59 -1.4 904,577 - LRK54_RS04265 0.59 -1.8 904,577 - LRK54_RS04265 0.59 +0.8 904,832 - -2.2 904,832 - -0.3 904,905 - -0.4 904,905 - -0.6 904,905 - -0.2 904,905 - +0.1 904,905 - -0.6 904,905 - -0.4 905,117 - +0.2 905,117 - -0.9
Or see this region's nucleotide sequence