Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19370 and IAI47_19375 are separated by 539 nucleotides IAI47_19375 and IAI47_19380 are separated by 248 nucleotides
IAI47_19370: IAI47_19370 - MFS transporter, at 98,886 to 100,136
_19370
IAI47_19375: IAI47_19375 - omptin family outer membrane protease, at 100,676 to 101,614
_19375
IAI47_19380: IAI47_19380 - hypothetical protein, at 101,863 to 102,426
_19380
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 99.680 kb on + strand, within IAI47_19370 at 99.680 kb on + strand, within IAI47_19370 at 99.697 kb on + strand, within IAI47_19370 at 99.697 kb on + strand, within IAI47_19370 at 99.698 kb on - strand, within IAI47_19370 at 99.758 kb on + strand, within IAI47_19370 at 99.797 kb on + strand, within IAI47_19370 at 99.809 kb on - strand, within IAI47_19370 at 99.831 kb on - strand, within IAI47_19370 at 99.831 kb on - strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.848 kb on - strand, within IAI47_19370 at 99.848 kb on - strand, within IAI47_19370 at 99.848 kb on - strand, within IAI47_19370 at 99.860 kb on + strand, within IAI47_19370 at 99.861 kb on - strand, within IAI47_19370 at 99.861 kb on - strand, within IAI47_19370 at 99.861 kb on - strand, within IAI47_19370 at 99.878 kb on + strand, within IAI47_19370 at 99.879 kb on - strand, within IAI47_19370 at 99.879 kb on - strand, within IAI47_19370 at 99.919 kb on + strand, within IAI47_19370 at 99.919 kb on + strand, within IAI47_19370 at 99.920 kb on - strand, within IAI47_19370 at 99.957 kb on + strand, within IAI47_19370 at 99.958 kb on - strand, within IAI47_19370 at 99.958 kb on - strand, within IAI47_19370 at 99.958 kb on - strand, within IAI47_19370 at 99.985 kb on + strand, within IAI47_19370 at 100.018 kb on + strand at 100.049 kb on + strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.055 kb on + strand at 100.075 kb on + strand at 100.075 kb on + strand at 100.092 kb on + strand at 100.092 kb on + strand at 100.092 kb on + strand at 100.093 kb on - strand at 100.124 kb on + strand at 100.137 kb on + strand at 100.137 kb on + strand at 100.137 kb on + strand at 100.137 kb on + strand at 100.138 kb on - strand at 100.162 kb on + strand at 100.180 kb on + strand at 100.180 kb on + strand at 100.181 kb on - strand at 100.181 kb on - strand at 100.190 kb on + strand at 100.190 kb on + strand at 100.191 kb on - strand at 100.191 kb on - strand at 100.193 kb on + strand at 100.194 kb on - strand at 100.194 kb on - strand at 100.194 kb on - strand at 100.231 kb on - strand at 100.241 kb on + strand at 100.242 kb on - strand at 100.242 kb on - strand at 100.242 kb on - strand at 100.242 kb on - strand at 100.243 kb on + strand at 100.316 kb on + strand at 100.316 kb on + strand at 100.316 kb on + strand at 100.316 kb on + strand at 100.317 kb on - strand at 100.490 kb on + strand at 100.490 kb on + strand at 100.490 kb on + strand at 100.491 kb on - strand at 100.599 kb on + strand at 100.600 kb on - strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.602 kb on - strand at 100.602 kb on - strand at 100.602 kb on - strand at 100.602 kb on - strand at 100.619 kb on - strand at 100.643 kb on + strand at 100.644 kb on - strand at 100.652 kb on + strand at 100.652 kb on + strand at 100.673 kb on - strand at 100.673 kb on - strand at 100.687 kb on + strand at 100.875 kb on + strand, within IAI47_19375 at 100.876 kb on - strand, within IAI47_19375 at 100.905 kb on + strand, within IAI47_19375 at 100.905 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.920 kb on - strand, within IAI47_19375 at 100.978 kb on + strand, within IAI47_19375 at 100.978 kb on + strand, within IAI47_19375 at 100.979 kb on - strand, within IAI47_19375 at 100.979 kb on - strand, within IAI47_19375 at 100.979 kb on - strand, within IAI47_19375 at 100.988 kb on + strand, within IAI47_19375 at 100.988 kb on + strand, within IAI47_19375 at 100.988 kb on + strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 101.053 kb on + strand, within IAI47_19375 at 101.053 kb on + strand, within IAI47_19375 at 101.054 kb on - strand, within IAI47_19375 at 101.054 kb on - strand, within IAI47_19375 at 101.058 kb on - strand, within IAI47_19375 at 101.069 kb on + strand, within IAI47_19375 at 101.070 kb on - strand, within IAI47_19375 at 101.070 kb on - strand, within IAI47_19375 at 101.083 kb on + strand, within IAI47_19375 at 101.084 kb on - strand, within IAI47_19375 at 101.084 kb on - strand, within IAI47_19375 at 101.097 kb on + strand, within IAI47_19375 at 101.098 kb on - strand, within IAI47_19375 at 101.098 kb on - strand, within IAI47_19375 at 101.098 kb on - strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.178 kb on - strand, within IAI47_19375 at 101.178 kb on - strand, within IAI47_19375 at 101.183 kb on + strand, within IAI47_19375 at 101.183 kb on + strand, within IAI47_19375 at 101.183 kb on + strand, within IAI47_19375 at 101.184 kb on - strand, within IAI47_19375 at 101.238 kb on - strand, within IAI47_19375 at 101.261 kb on + strand, within IAI47_19375 at 101.261 kb on + strand, within IAI47_19375 at 101.261 kb on + strand, within IAI47_19375 at 101.262 kb on - strand, within IAI47_19375 at 101.262 kb on - strand, within IAI47_19375 at 101.262 kb on - strand, within IAI47_19375 at 101.287 kb on + strand, within IAI47_19375 at 101.288 kb on - strand, within IAI47_19375 at 101.288 kb on - strand, within IAI47_19375 at 101.313 kb on + strand, within IAI47_19375 at 101.313 kb on + strand, within IAI47_19375 at 101.360 kb on + strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.405 kb on + strand, within IAI47_19375 at 101.433 kb on - strand, within IAI47_19375 at 101.435 kb on + strand, within IAI47_19375 at 101.435 kb on + strand, within IAI47_19375 at 101.435 kb on + strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.475 kb on - strand, within IAI47_19375 at 101.483 kb on + strand, within IAI47_19375 at 101.678 kb on + strand at 101.679 kb on - strand at 101.689 kb on + strand at 101.689 kb on + strand at 101.690 kb on - strand at 101.690 kb on - strand at 101.691 kb on + strand at 101.692 kb on - strand at 101.692 kb on - strand at 101.713 kb on + strand at 101.720 kb on - strand at 101.766 kb on - strand at 101.766 kb on - strand at 101.802 kb on + strand at 101.809 kb on - strand at 101.816 kb on + strand at 101.898 kb on - strand at 101.898 kb on - strand at 101.951 kb on - strand, within IAI47_19380 at 101.967 kb on + strand, within IAI47_19380 at 101.984 kb on + strand, within IAI47_19380 at 101.994 kb on - strand, within IAI47_19380 at 102.001 kb on - strand, within IAI47_19380 at 102.074 kb on - strand, within IAI47_19380 at 102.092 kb on + strand, within IAI47_19380 at 102.115 kb on - strand, within IAI47_19380 at 102.129 kb on - strand, within IAI47_19380 at 102.145 kb on - strand, within IAI47_19380 at 102.172 kb on - strand, within IAI47_19380 at 102.314 kb on - strand, within IAI47_19380 at 102.377 kb on - strand at 102.379 kb on - strand at 102.412 kb on - strand at 102.471 kb on + strand at 102.485 kb on + strand at 102.485 kb on + strand at 102.486 kb on - strand at 102.486 kb on - strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.489 kb on - strand at 102.489 kb on - strand at 102.504 kb on - strand at 102.529 kb on + strand at 102.530 kb on - strand at 102.532 kb on + strand at 102.533 kb on - strand at 102.533 kb on - strand at 102.575 kb on - strand at 102.580 kb on + strand at 102.593 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.608 kb on - strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.613 kb on - strand at 102.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 99,680 + IAI47_19370 0.63 -0.2 99,680 + IAI47_19370 0.63 -1.2 99,697 + IAI47_19370 0.65 -0.8 99,697 + IAI47_19370 0.65 -0.3 99,698 - IAI47_19370 0.65 +0.8 99,758 + IAI47_19370 0.70 +1.2 99,797 + IAI47_19370 0.73 -2.0 99,809 - IAI47_19370 0.74 +0.0 99,831 - IAI47_19370 0.76 -0.1 99,831 - IAI47_19370 0.76 +1.3 99,847 + IAI47_19370 0.77 +0.9 99,847 + IAI47_19370 0.77 -1.4 99,847 + IAI47_19370 0.77 +0.0 99,847 + IAI47_19370 0.77 +1.1 99,848 - IAI47_19370 0.77 +1.0 99,848 - IAI47_19370 0.77 +0.4 99,848 - IAI47_19370 0.77 -0.1 99,860 + IAI47_19370 0.78 -1.1 99,861 - IAI47_19370 0.78 -0.0 99,861 - IAI47_19370 0.78 -0.2 99,861 - IAI47_19370 0.78 -1.3 99,878 + IAI47_19370 0.79 +0.6 99,879 - IAI47_19370 0.79 -0.4 99,879 - IAI47_19370 0.79 +0.2 99,919 + IAI47_19370 0.83 +1.6 99,919 + IAI47_19370 0.83 -1.7 99,920 - IAI47_19370 0.83 -1.4 99,957 + IAI47_19370 0.86 +0.4 99,958 - IAI47_19370 0.86 +1.2 99,958 - IAI47_19370 0.86 -0.3 99,958 - IAI47_19370 0.86 -0.7 99,985 + IAI47_19370 0.88 -0.2 100,018 + -1.6 100,049 + -0.1 100,050 - +0.8 100,050 - -0.6 100,055 + -0.1 100,075 + +0.2 100,075 + -0.2 100,092 + +0.0 100,092 + -1.4 100,092 + +0.4 100,093 - +2.2 100,124 + +0.5 100,137 + -0.9 100,137 + -0.4 100,137 + -2.3 100,137 + -2.5 100,138 - +0.8 100,162 + -1.4 100,180 + +1.4 100,180 + +1.5 100,181 - -3.3 100,181 - -1.9 100,190 + +1.4 100,190 + -0.1 100,191 - -0.7 100,191 - -1.8 100,193 + +0.4 100,194 - -0.1 100,194 - -1.2 100,194 - -0.5 100,231 - +0.5 100,241 + -0.4 100,242 - +0.1 100,242 - +0.8 100,242 - +2.4 100,242 - -0.3 100,243 + -1.9 100,316 + +0.7 100,316 + -1.2 100,316 + +0.5 100,316 + -0.5 100,317 - -0.5 100,490 + +1.1 100,490 + +1.4 100,490 + -1.6 100,491 - +0.2 100,599 + -0.4 100,600 - +1.0 100,601 + +0.8 100,601 + -2.4 100,601 + -1.9 100,601 + +1.4 100,601 + +1.1 100,601 + -0.2 100,602 - -0.6 100,602 - +0.4 100,602 - -0.1 100,602 - +0.6 100,619 - +0.5 100,643 + +4.6 100,644 - +1.0 100,652 + +1.1 100,652 + +0.9 100,673 - -0.3 100,673 - -0.9 100,687 + +0.1 100,875 + IAI47_19375 0.21 +0.1 100,876 - IAI47_19375 0.21 -0.2 100,905 + IAI47_19375 0.24 -1.3 100,905 + IAI47_19375 0.24 -0.9 100,919 + IAI47_19375 0.26 +1.5 100,919 + IAI47_19375 0.26 +1.4 100,919 + IAI47_19375 0.26 -1.2 100,919 + IAI47_19375 0.26 +0.6 100,919 + IAI47_19375 0.26 -0.6 100,920 - IAI47_19375 0.26 -0.1 100,978 + IAI47_19375 0.32 +0.6 100,978 + IAI47_19375 0.32 -2.2 100,979 - IAI47_19375 0.32 -1.1 100,979 - IAI47_19375 0.32 +1.1 100,979 - IAI47_19375 0.32 +1.0 100,988 + IAI47_19375 0.33 +0.3 100,988 + IAI47_19375 0.33 +3.5 100,988 + IAI47_19375 0.33 -0.2 100,989 - IAI47_19375 0.33 +1.8 100,989 - IAI47_19375 0.33 -1.9 100,989 - IAI47_19375 0.33 -0.1 100,989 - IAI47_19375 0.33 +0.4 101,053 + IAI47_19375 0.40 -2.3 101,053 + IAI47_19375 0.40 +3.2 101,054 - IAI47_19375 0.40 +0.2 101,054 - IAI47_19375 0.40 +0.8 101,058 - IAI47_19375 0.41 +0.7 101,069 + IAI47_19375 0.42 +1.2 101,070 - IAI47_19375 0.42 +1.1 101,070 - IAI47_19375 0.42 -1.4 101,083 + IAI47_19375 0.43 +1.4 101,084 - IAI47_19375 0.43 -1.1 101,084 - IAI47_19375 0.43 +0.7 101,097 + IAI47_19375 0.45 -0.3 101,098 - IAI47_19375 0.45 +0.1 101,098 - IAI47_19375 0.45 +1.2 101,098 - IAI47_19375 0.45 +0.2 101,111 + IAI47_19375 0.46 +0.9 101,111 + IAI47_19375 0.46 -0.4 101,111 + IAI47_19375 0.46 +0.2 101,111 + IAI47_19375 0.46 +1.1 101,112 - IAI47_19375 0.46 +0.0 101,112 - IAI47_19375 0.46 +0.6 101,112 - IAI47_19375 0.46 -1.1 101,112 - IAI47_19375 0.46 +1.0 101,112 - IAI47_19375 0.46 +0.6 101,178 - IAI47_19375 0.53 -1.1 101,178 - IAI47_19375 0.53 +0.0 101,183 + IAI47_19375 0.54 +2.1 101,183 + IAI47_19375 0.54 +0.5 101,183 + IAI47_19375 0.54 +3.3 101,184 - IAI47_19375 0.54 +0.3 101,238 - IAI47_19375 0.60 -1.4 101,261 + IAI47_19375 0.62 +0.9 101,261 + IAI47_19375 0.62 +0.3 101,261 + IAI47_19375 0.62 +0.4 101,262 - IAI47_19375 0.62 +0.2 101,262 - IAI47_19375 0.62 +1.0 101,262 - IAI47_19375 0.62 -1.1 101,287 + IAI47_19375 0.65 -1.6 101,288 - IAI47_19375 0.65 +0.5 101,288 - IAI47_19375 0.65 +1.1 101,313 + IAI47_19375 0.68 -0.6 101,313 + IAI47_19375 0.68 +2.5 101,360 + IAI47_19375 0.73 -0.8 101,361 - IAI47_19375 0.73 +0.6 101,361 - IAI47_19375 0.73 +1.0 101,361 - IAI47_19375 0.73 +0.5 101,361 - IAI47_19375 0.73 -0.2 101,361 - IAI47_19375 0.73 -1.2 101,405 + IAI47_19375 0.78 -1.4 101,433 - IAI47_19375 0.81 +0.1 101,435 + IAI47_19375 0.81 -2.3 101,435 + IAI47_19375 0.81 -2.2 101,435 + IAI47_19375 0.81 +0.1 101,436 - IAI47_19375 0.81 +2.1 101,436 - IAI47_19375 0.81 +0.8 101,436 - IAI47_19375 0.81 +0.4 101,436 - IAI47_19375 0.81 -0.7 101,436 - IAI47_19375 0.81 -1.0 101,475 - IAI47_19375 0.85 +0.1 101,483 + IAI47_19375 0.86 +1.0 101,678 + +0.7 101,679 - +2.1 101,689 + -1.2 101,689 + -0.4 101,690 - -1.1 101,690 - -0.2 101,691 + +0.4 101,692 - -0.9 101,692 - +1.4 101,713 + +0.0 101,720 - -0.4 101,766 - +0.4 101,766 - +1.7 101,802 + -0.8 101,809 - +2.7 101,816 + +0.2 101,898 - +0.8 101,898 - -0.9 101,951 - IAI47_19380 0.16 -1.5 101,967 + IAI47_19380 0.18 +0.6 101,984 + IAI47_19380 0.21 +0.0 101,994 - IAI47_19380 0.23 +0.3 102,001 - IAI47_19380 0.24 -1.9 102,074 - IAI47_19380 0.37 -1.3 102,092 + IAI47_19380 0.41 -0.5 102,115 - IAI47_19380 0.45 -0.6 102,129 - IAI47_19380 0.47 -1.8 102,145 - IAI47_19380 0.50 -0.7 102,172 - IAI47_19380 0.55 -2.8 102,314 - IAI47_19380 0.80 +0.6 102,377 - -1.1 102,379 - +0.6 102,412 - -0.9 102,471 + +2.6 102,485 + -1.0 102,485 + +0.4 102,486 - +1.1 102,486 - +2.6 102,488 + -0.6 102,488 + -2.2 102,488 + +0.2 102,489 - +0.4 102,489 - +0.0 102,504 - +0.6 102,529 + +0.2 102,530 - +0.8 102,532 + +0.4 102,533 - +0.2 102,533 - +0.1 102,575 - +0.4 102,580 + -0.0 102,593 + -1.1 102,607 + -0.9 102,607 + -1.9 102,607 + +0.9 102,608 - +0.2 102,612 + -1.5 102,612 + -0.4 102,612 + -1.7 102,613 - +0.5 102,613 - -0.2
Or see this region's nucleotide sequence