Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4026

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4024 and Ga0059261_4025 overlap by 4 nucleotidesGa0059261_4025 and Ga0059261_4026 overlap by 8 nucleotidesGa0059261_4026 and Ga0059261_4027 overlap by 20 nucleotides Ga0059261_4024: Ga0059261_4024 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 4,142,173 to 4,143,165 _4024 Ga0059261_4025: Ga0059261_4025 - Nucleotidyl transferase, at 4,143,162 to 4,143,923 _4025 Ga0059261_4026: Ga0059261_4026 - double-strand break repair protein AddB, alphaproteobacterial type, at 4,143,916 to 4,146,861 _4026 Ga0059261_4027: Ga0059261_4027 - DNA helicase/exodeoxyribonuclease V, subunit A (EC 3.1.11.5), at 4,146,842 to 4,150,240 _4027 Position (kb) 4143 4144 4145 4146 4147Strain fitness (log2 ratio) -2 -1 0 1 2at 4142.947 kb on + strand, within Ga0059261_4024at 4142.947 kb on + strand, within Ga0059261_4024at 4143.058 kb on + strand, within Ga0059261_4024at 4143.059 kb on - strand, within Ga0059261_4024at 4143.120 kb on + strandat 4143.120 kb on + strandat 4143.378 kb on + strand, within Ga0059261_4025at 4143.378 kb on + strand, within Ga0059261_4025at 4143.378 kb on + strand, within Ga0059261_4025at 4143.837 kb on + strand, within Ga0059261_4025at 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4143.943 kb on + strandat 4146.841 kb on + strandat 4146.841 kb on + strandat 4146.841 kb on + strandat 4146.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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4,142,947 + Ga0059261_4024 0.78 -1.0
4,142,947 + Ga0059261_4024 0.78 +0.0
4,143,058 + Ga0059261_4024 0.89 -1.7
4,143,059 - Ga0059261_4024 0.89 -0.2
4,143,120 + -1.7
4,143,120 + -0.5
4,143,378 + Ga0059261_4025 0.28 +0.0
4,143,378 + Ga0059261_4025 0.28 -2.0
4,143,378 + Ga0059261_4025 0.28 +2.4
4,143,837 + Ga0059261_4025 0.89 -1.7
4,143,943 + -1.3
4,143,943 + +0.6
4,143,943 + -1.2
4,143,943 + -0.8
4,143,943 + +0.0
4,143,943 + +0.2
4,143,943 + +0.8
4,146,841 + +1.8
4,146,841 + -1.8
4,146,841 + -0.4
4,146,842 - -1.2

Or see this region's nucleotide sequence