Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2121 and Ga0059261_2122 are separated by 97 nucleotides Ga0059261_2122 and Ga0059261_2123 are separated by 213 nucleotides Ga0059261_2123 and Ga0059261_2124 are separated by 39 nucleotides Ga0059261_2124 and Ga0059261_2125 are separated by 90 nucleotides
Ga0059261_2121: Ga0059261_2121 - hypothetical protein, at 2,234,368 to 2,236,869
_2121
Ga0059261_2122: Ga0059261_2122 - chorismate mutase (EC 5.4.99.5), at 2,236,967 to 2,237,260
_2122
Ga0059261_2123: Ga0059261_2123 - Geranylgeranyl pyrophosphate synthase, at 2,237,474 to 2,238,487
_2123
Ga0059261_2124: Ga0059261_2124 - hypothetical protein, at 2,238,527 to 2,238,739
_2124
Ga0059261_2125: Ga0059261_2125 - ATP-dependent helicase HrpB, at 2,238,830 to 2,241,286
_2125
Position (kb)
2237
2238
2239 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2236.598 kb on + strand, within Ga0059261_2121 at 2236.598 kb on + strand, within Ga0059261_2121 at 2236.598 kb on + strand, within Ga0059261_2121 at 2236.624 kb on + strand at 2236.624 kb on + strand at 2236.853 kb on + strand at 2236.915 kb on + strand at 2236.915 kb on + strand at 2236.916 kb on - strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.937 kb on + strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2236.938 kb on - strand at 2237.265 kb on + strand at 2237.266 kb on - strand at 2237.266 kb on - strand at 2237.266 kb on - strand at 2237.337 kb on + strand at 2237.337 kb on + strand at 2237.338 kb on - strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.342 kb on + strand at 2237.343 kb on - strand at 2237.343 kb on - strand at 2237.343 kb on - strand at 2237.412 kb on + strand at 2237.413 kb on - strand at 2237.413 kb on - strand at 2237.413 kb on - strand at 2237.418 kb on + strand at 2237.419 kb on - strand at 2237.419 kb on - strand at 2237.419 kb on - strand at 2237.419 kb on - strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.528 kb on + strand at 2238.529 kb on - strand at 2238.529 kb on - strand at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.617 kb on + strand, within Ga0059261_2124 at 2238.618 kb on - strand, within Ga0059261_2124 at 2238.618 kb on - strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.633 kb on + strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.634 kb on - strand, within Ga0059261_2124 at 2238.687 kb on + strand, within Ga0059261_2124 at 2238.687 kb on + strand, within Ga0059261_2124 at 2238.688 kb on - strand, within Ga0059261_2124 at 2238.688 kb on - strand, within Ga0059261_2124 at 2238.818 kb on + strand at 2238.819 kb on - strand at 2238.819 kb on - strand at 2238.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,236,598 + Ga0059261_2121 0.89 +2.1 2,236,598 + Ga0059261_2121 0.89 +0.9 2,236,598 + Ga0059261_2121 0.89 +0.7 2,236,624 + +0.5 2,236,624 + +0.4 2,236,853 + -0.3 2,236,915 + -1.4 2,236,915 + +0.4 2,236,916 - +0.9 2,236,937 + +1.1 2,236,937 + +0.1 2,236,937 + +0.0 2,236,937 + +0.5 2,236,937 + +1.6 2,236,937 + +0.6 2,236,937 + +0.4 2,236,937 + +0.1 2,236,938 - -0.9 2,236,938 - +2.1 2,236,938 - +1.8 2,236,938 - +0.0 2,236,938 - +0.1 2,236,938 - -0.7 2,236,938 - +1.2 2,236,938 - +1.1 2,237,265 + -0.2 2,237,266 - +1.1 2,237,266 - +0.1 2,237,266 - -0.4 2,237,337 + +2.4 2,237,337 + -1.4 2,237,338 - +1.8 2,237,342 + +0.2 2,237,342 + +0.5 2,237,342 + -2.9 2,237,342 + -0.7 2,237,342 + -0.9 2,237,342 + +1.1 2,237,342 + -1.1 2,237,342 + +2.1 2,237,342 + -1.2 2,237,343 - -0.2 2,237,343 - +1.1 2,237,343 - +1.1 2,237,412 + +1.1 2,237,413 - +1.1 2,237,413 - -0.7 2,237,413 - +0.6 2,237,418 + -3.1 2,237,419 - -0.2 2,237,419 - -0.5 2,237,419 - -0.1 2,237,419 - -0.2 2,238,528 + -0.4 2,238,528 + -0.7 2,238,528 + +1.2 2,238,528 + -0.8 2,238,529 - +1.1 2,238,529 - +0.8 2,238,617 + Ga0059261_2124 0.42 +1.1 2,238,617 + Ga0059261_2124 0.42 -0.6 2,238,617 + Ga0059261_2124 0.42 +1.1 2,238,617 + Ga0059261_2124 0.42 +0.6 2,238,617 + Ga0059261_2124 0.42 +0.3 2,238,617 + Ga0059261_2124 0.42 +2.1 2,238,618 - Ga0059261_2124 0.43 +1.3 2,238,618 - Ga0059261_2124 0.43 +2.1 2,238,633 + Ga0059261_2124 0.50 -0.7 2,238,633 + Ga0059261_2124 0.50 +0.1 2,238,633 + Ga0059261_2124 0.50 +2.1 2,238,633 + Ga0059261_2124 0.50 +0.4 2,238,633 + Ga0059261_2124 0.50 +0.3 2,238,633 + Ga0059261_2124 0.50 +0.8 2,238,633 + Ga0059261_2124 0.50 -0.8 2,238,633 + Ga0059261_2124 0.50 +0.2 2,238,634 - Ga0059261_2124 0.50 +0.1 2,238,634 - Ga0059261_2124 0.50 +0.9 2,238,634 - Ga0059261_2124 0.50 +0.5 2,238,634 - Ga0059261_2124 0.50 +0.1 2,238,634 - Ga0059261_2124 0.50 -0.4 2,238,634 - Ga0059261_2124 0.50 +0.5 2,238,687 + Ga0059261_2124 0.75 +0.6 2,238,687 + Ga0059261_2124 0.75 +1.1 2,238,688 - Ga0059261_2124 0.76 +0.5 2,238,688 - Ga0059261_2124 0.76 +1.5 2,238,818 + -0.2 2,238,819 - +0.1 2,238,819 - +0.4 2,238,901 - +0.7
Or see this region's nucleotide sequence