Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1899

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1898 and Ga0059261_1899 are separated by 163 nucleotidesGa0059261_1899 and Ga0059261_1900 are separated by 28 nucleotidesGa0059261_1900 and Ga0059261_1901 are separated by 9 nucleotides Ga0059261_1898: Ga0059261_1898 - TonB-dependent receptor, at 2,008,176 to 2,011,028 _1898 Ga0059261_1899: Ga0059261_1899 - Lysophospholipase L1 and related esterases, at 2,011,192 to 2,012,067 _1899 Ga0059261_1900: Ga0059261_1900 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,012,096 to 2,012,848 _1900 Ga0059261_1901: Ga0059261_1901 - Sugar phosphate permease, at 2,012,858 to 2,014,129 _1901 Position (kb) 2011 2012 2013Strain fitness (log2 ratio) -2 -1 0 1 2at 2010.286 kb on + strand, within Ga0059261_1898at 2010.286 kb on + strand, within Ga0059261_1898at 2010.287 kb on - strand, within Ga0059261_1898at 2010.287 kb on - strand, within Ga0059261_1898at 2010.287 kb on - strand, within Ga0059261_1898at 2010.287 kb on - strand, within Ga0059261_1898at 2010.287 kb on - strand, within Ga0059261_1898at 2010.287 kb on - strandat 2010.287 kb on - strand, within Ga0059261_1898at 2010.304 kb on + strand, within Ga0059261_1898at 2010.305 kb on - strand, within Ga0059261_1898at 2010.395 kb on + strand, within Ga0059261_1898at 2010.396 kb on - strand, within Ga0059261_1898at 2010.396 kb on - strand, within Ga0059261_1898at 2010.396 kb on - strandat 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.397 kb on + strand, within Ga0059261_1898at 2010.398 kb on - strandat 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.398 kb on - strand, within Ga0059261_1898at 2010.451 kb on + strand, within Ga0059261_1898at 2010.452 kb on - strand, within Ga0059261_1898at 2010.452 kb on - strand, within Ga0059261_1898at 2010.499 kb on + strand, within Ga0059261_1898at 2010.577 kb on + strand, within Ga0059261_1898at 2010.577 kb on + strand, within Ga0059261_1898at 2010.577 kb on + strand, within Ga0059261_1898at 2010.578 kb on - strand, within Ga0059261_1898at 2010.578 kb on - strand, within Ga0059261_1898at 2010.578 kb on - strand, within Ga0059261_1898at 2010.578 kb on - strand, within Ga0059261_1898at 2010.578 kb on - strand, within Ga0059261_1898at 2010.724 kb on + strand, within Ga0059261_1898at 2010.724 kb on + strand, within Ga0059261_1898at 2010.724 kb on + strand, within Ga0059261_1898at 2010.725 kb on - strand, within Ga0059261_1898at 2010.725 kb on - strand, within Ga0059261_1898at 2010.725 kb on - strand, within Ga0059261_1898at 2010.818 kb on + strandat 2010.818 kb on + strandat 2010.818 kb on + strandat 2010.819 kb on - strandat 2010.819 kb on - strandat 2010.830 kb on + strandat 2010.830 kb on + strandat 2010.830 kb on + strandat 2010.845 kb on + strandat 2011.115 kb on + strandat 2011.246 kb on + strandat 2011.246 kb on + strandat 2011.290 kb on + strand, within Ga0059261_1899at 2011.290 kb on + strand, within Ga0059261_1899at 2011.290 kb on + strand, within Ga0059261_1899at 2011.290 kb on + strand, within Ga0059261_1899at 2011.290 kb on + strand, within Ga0059261_1899at 2011.290 kb on + strand, within Ga0059261_1899at 2011.290 kb on + strand, within Ga0059261_1899at 2011.291 kb on - strand, within Ga0059261_1899at 2011.291 kb on - strand, within Ga0059261_1899at 2011.291 kb on - strand, within Ga0059261_1899at 2011.291 kb on - strand, within Ga0059261_1899at 2011.291 kb on - strand, within Ga0059261_1899at 2011.291 kb on - strandat 2011.291 kb on - strand, within Ga0059261_1899at 2011.291 kb on - strand, within Ga0059261_1899at 2011.291 kb on - strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.292 kb on + strand, within Ga0059261_1899at 2011.293 kb on - strand, within Ga0059261_1899at 2011.293 kb on - strand, within Ga0059261_1899at 2011.293 kb on - strand, within Ga0059261_1899at 2011.293 kb on - strand, within Ga0059261_1899at 2011.722 kb on + strand, within Ga0059261_1899at 2011.723 kb on - strand, within Ga0059261_1899at 2011.723 kb on - strand, within Ga0059261_1899at 2011.723 kb on - strand, within Ga0059261_1899at 2011.757 kb on + strand, within Ga0059261_1899at 2011.757 kb on + strand, within Ga0059261_1899at 2011.757 kb on + strand, within Ga0059261_1899at 2011.758 kb on - strand, within Ga0059261_1899at 2011.758 kb on - strand, within Ga0059261_1899at 2011.758 kb on - strand, within Ga0059261_1899at 2011.812 kb on - strand, within Ga0059261_1899at 2011.812 kb on - strand, within Ga0059261_1899at 2012.097 kb on + strandat 2012.097 kb on + strandat 2012.222 kb on - strand, within Ga0059261_1900at 2012.222 kb on - strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.382 kb on + strand, within Ga0059261_1900at 2012.383 kb on - strand, within Ga0059261_1900at 2012.383 kb on - strand, within Ga0059261_1900at 2012.383 kb on - strand, within Ga0059261_1900at 2012.383 kb on - strand, within Ga0059261_1900at 2012.383 kb on - strand, within Ga0059261_1900at 2012.383 kb on - strand, within Ga0059261_1900at 2012.676 kb on - strand, within Ga0059261_1900at 2012.743 kb on - strand, within Ga0059261_1900at 2012.753 kb on + strand, within Ga0059261_1900at 2012.753 kb on + strand, within Ga0059261_1900at 2012.753 kb on + strand, within Ga0059261_1900at 2012.753 kb on + strand, within Ga0059261_1900at 2012.754 kb on - strandat 2012.754 kb on - strand, within Ga0059261_1900at 2012.754 kb on - strand, within Ga0059261_1900at 2012.754 kb on - strand, within Ga0059261_1900at 2012.754 kb on - strand, within Ga0059261_1900at 2012.754 kb on - strand, within Ga0059261_1900at 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.850 kb on + strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.851 kb on - strandat 2012.859 kb on + strandat 2012.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,010,286 + Ga0059261_1898 0.74 +1.1
2,010,286 + Ga0059261_1898 0.74 +0.2
2,010,287 - Ga0059261_1898 0.74 +0.9
2,010,287 - Ga0059261_1898 0.74 -0.1
2,010,287 - Ga0059261_1898 0.74 +0.8
2,010,287 - Ga0059261_1898 0.74 +0.1
2,010,287 - Ga0059261_1898 0.74 -0.1
2,010,287 - +2.1
2,010,287 - Ga0059261_1898 0.74 -0.9
2,010,304 + Ga0059261_1898 0.75 -0.3
2,010,305 - Ga0059261_1898 0.75 +1.4
2,010,395 + Ga0059261_1898 0.78 +0.4
2,010,396 - Ga0059261_1898 0.78 +0.1
2,010,396 - Ga0059261_1898 0.78 -0.2
2,010,396 - +1.1
2,010,397 + Ga0059261_1898 0.78 -0.6
2,010,397 + Ga0059261_1898 0.78 +1.1
2,010,397 + Ga0059261_1898 0.78 +0.6
2,010,397 + Ga0059261_1898 0.78 +1.3
2,010,397 + Ga0059261_1898 0.78 -0.5
2,010,397 + Ga0059261_1898 0.78 -1.0
2,010,397 + Ga0059261_1898 0.78 +0.3
2,010,397 + Ga0059261_1898 0.78 -1.9
2,010,397 + Ga0059261_1898 0.78 -0.7
2,010,397 + Ga0059261_1898 0.78 -0.6
2,010,397 + Ga0059261_1898 0.78 +0.5
2,010,397 + Ga0059261_1898 0.78 +0.4
2,010,397 + Ga0059261_1898 0.78 +0.6
2,010,397 + Ga0059261_1898 0.78 +0.1
2,010,397 + Ga0059261_1898 0.78 +0.7
2,010,397 + Ga0059261_1898 0.78 -0.8
2,010,397 + Ga0059261_1898 0.78 -0.1
2,010,397 + Ga0059261_1898 0.78 -0.0
2,010,397 + Ga0059261_1898 0.78 -0.3
2,010,398 - +0.5
2,010,398 - Ga0059261_1898 0.78 +0.4
2,010,398 - Ga0059261_1898 0.78 -0.1
2,010,398 - Ga0059261_1898 0.78 +0.3
2,010,398 - Ga0059261_1898 0.78 -0.2
2,010,398 - Ga0059261_1898 0.78 +0.3
2,010,398 - Ga0059261_1898 0.78 +1.0
2,010,398 - Ga0059261_1898 0.78 +2.1
2,010,398 - Ga0059261_1898 0.78 +0.7
2,010,398 - Ga0059261_1898 0.78 +1.4
2,010,398 - Ga0059261_1898 0.78 +0.0
2,010,451 + Ga0059261_1898 0.80 -1.8
2,010,452 - Ga0059261_1898 0.80 -0.7
2,010,452 - Ga0059261_1898 0.80 -1.3
2,010,499 + Ga0059261_1898 0.81 +0.5
2,010,577 + Ga0059261_1898 0.84 +1.1
2,010,577 + Ga0059261_1898 0.84 +1.2
2,010,577 + Ga0059261_1898 0.84 -0.1
2,010,578 - Ga0059261_1898 0.84 -0.8
2,010,578 - Ga0059261_1898 0.84 +1.7
2,010,578 - Ga0059261_1898 0.84 +1.1
2,010,578 - Ga0059261_1898 0.84 -0.3
2,010,578 - Ga0059261_1898 0.84 +0.4
2,010,724 + Ga0059261_1898 0.89 +0.6
2,010,724 + Ga0059261_1898 0.89 +1.0
2,010,724 + Ga0059261_1898 0.89 +0.8
2,010,725 - Ga0059261_1898 0.89 +1.0
2,010,725 - Ga0059261_1898 0.89 -0.0
2,010,725 - Ga0059261_1898 0.89 -0.0
2,010,818 + -0.2
2,010,818 + +0.1
2,010,818 + -0.5
2,010,819 - +0.2
2,010,819 - -0.3
2,010,830 + +1.7
2,010,830 + +0.5
2,010,830 + +0.6
2,010,845 + +0.1
2,011,115 + +0.2
2,011,246 + -0.1
2,011,246 + +0.6
2,011,290 + Ga0059261_1899 0.11 -0.6
2,011,290 + Ga0059261_1899 0.11 -0.7
2,011,290 + Ga0059261_1899 0.11 +0.2
2,011,290 + Ga0059261_1899 0.11 -0.4
2,011,290 + Ga0059261_1899 0.11 -0.6
2,011,290 + Ga0059261_1899 0.11 -0.7
2,011,290 + Ga0059261_1899 0.11 -0.2
2,011,291 - Ga0059261_1899 0.11 -0.5
2,011,291 - Ga0059261_1899 0.11 -0.6
2,011,291 - Ga0059261_1899 0.11 -0.4
2,011,291 - Ga0059261_1899 0.11 +0.2
2,011,291 - Ga0059261_1899 0.11 -0.3
2,011,291 - +1.1
2,011,291 - Ga0059261_1899 0.11 +1.5
2,011,291 - Ga0059261_1899 0.11 -0.6
2,011,291 - Ga0059261_1899 0.11 +0.5
2,011,292 + Ga0059261_1899 0.11 -1.1
2,011,292 + Ga0059261_1899 0.11 +0.5
2,011,292 + Ga0059261_1899 0.11 +0.8
2,011,292 + Ga0059261_1899 0.11 +0.0
2,011,292 + Ga0059261_1899 0.11 +0.8
2,011,292 + Ga0059261_1899 0.11 +0.5
2,011,292 + Ga0059261_1899 0.11 -1.1
2,011,292 + Ga0059261_1899 0.11 +0.4
2,011,293 - Ga0059261_1899 0.12 -0.4
2,011,293 - Ga0059261_1899 0.12 +1.2
2,011,293 - Ga0059261_1899 0.12 +0.8
2,011,293 - Ga0059261_1899 0.12 -0.6
2,011,722 + Ga0059261_1899 0.61 -0.6
2,011,723 - Ga0059261_1899 0.61 -0.1
2,011,723 - Ga0059261_1899 0.61 +0.4
2,011,723 - Ga0059261_1899 0.61 -1.0
2,011,757 + Ga0059261_1899 0.64 -0.3
2,011,757 + Ga0059261_1899 0.64 +0.5
2,011,757 + Ga0059261_1899 0.64 +0.1
2,011,758 - Ga0059261_1899 0.65 -0.1
2,011,758 - Ga0059261_1899 0.65 -0.3
2,011,758 - Ga0059261_1899 0.65 +0.0
2,011,812 - Ga0059261_1899 0.71 -0.6
2,011,812 - Ga0059261_1899 0.71 +0.2
2,012,097 + +0.3
2,012,097 + -1.2
2,012,222 - Ga0059261_1900 0.17 -0.1
2,012,222 - Ga0059261_1900 0.17 -0.3
2,012,382 + Ga0059261_1900 0.38 -0.4
2,012,382 + Ga0059261_1900 0.38 -1.1
2,012,382 + Ga0059261_1900 0.38 +0.6
2,012,382 + Ga0059261_1900 0.38 -1.1
2,012,382 + Ga0059261_1900 0.38 -1.1
2,012,382 + Ga0059261_1900 0.38 +0.4
2,012,382 + Ga0059261_1900 0.38 +0.3
2,012,382 + Ga0059261_1900 0.38 -1.8
2,012,383 - Ga0059261_1900 0.38 +0.5
2,012,383 - Ga0059261_1900 0.38 +0.8
2,012,383 - Ga0059261_1900 0.38 -0.2
2,012,383 - Ga0059261_1900 0.38 -1.0
2,012,383 - Ga0059261_1900 0.38 -0.2
2,012,383 - Ga0059261_1900 0.38 -0.3
2,012,676 - Ga0059261_1900 0.77 +0.3
2,012,743 - Ga0059261_1900 0.86 +0.1
2,012,753 + Ga0059261_1900 0.87 -0.7
2,012,753 + Ga0059261_1900 0.87 -1.0
2,012,753 + Ga0059261_1900 0.87 -0.5
2,012,753 + Ga0059261_1900 0.87 +0.3
2,012,754 - +0.1
2,012,754 - Ga0059261_1900 0.87 +1.3
2,012,754 - Ga0059261_1900 0.87 -0.9
2,012,754 - Ga0059261_1900 0.87 -0.1
2,012,754 - Ga0059261_1900 0.87 -1.0
2,012,754 - Ga0059261_1900 0.87 +1.4
2,012,850 + -0.3
2,012,850 + -0.1
2,012,850 + +2.1
2,012,850 + +0.3
2,012,850 + -0.5
2,012,850 + +0.3
2,012,850 + -0.8
2,012,850 + +0.3
2,012,850 + -0.9
2,012,850 + +0.2
2,012,850 + -0.2
2,012,850 + -0.4
2,012,850 + -1.3
2,012,850 + -1.0
2,012,850 + +0.7
2,012,851 - +0.2
2,012,851 - -0.1
2,012,851 - -0.8
2,012,851 - -1.3
2,012,851 - +0.5
2,012,851 - -0.1
2,012,851 - -0.6
2,012,851 - +0.2
2,012,851 - +0.3
2,012,851 - +1.7
2,012,851 - +0.7
2,012,851 - +1.1
2,012,859 + -0.3
2,012,860 - +0.2

Or see this region's nucleotide sequence