Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1887

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1885 and Ga0059261_1886 overlap by 4 nucleotidesGa0059261_1886 and Ga0059261_1887 are separated by 2 nucleotidesGa0059261_1887 and Ga0059261_1888 overlap by 4 nucleotidesGa0059261_1888 and Ga0059261_1889 are separated by 28 nucleotides Ga0059261_1885: Ga0059261_1885 - Predicted acetyltransferase, at 1,995,057 to 1,995,734 _1885 Ga0059261_1886: Ga0059261_1886 - phenazine biosynthesis protein PhzF family, at 1,995,731 to 1,996,522 _1886 Ga0059261_1887: Ga0059261_1887 - cation diffusion facilitator family transporter, at 1,996,525 to 1,997,442 _1887 Ga0059261_1888: Ga0059261_1888 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 1,997,439 to 1,998,029 _1888 Ga0059261_1889: Ga0059261_1889 - Predicted glycosylase, at 1,998,058 to 1,999,176 _1889 Position (kb) 1996 1997 1998Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1995.813 kb on + strand, within Ga0059261_1886at 1995.814 kb on - strand, within Ga0059261_1886at 1995.876 kb on + strand, within Ga0059261_1886at 1995.876 kb on + strand, within Ga0059261_1886at 1995.877 kb on - strand, within Ga0059261_1886at 1995.877 kb on - strand, within Ga0059261_1886at 1995.877 kb on - strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.077 kb on + strand, within Ga0059261_1886at 1996.078 kb on - strand, within Ga0059261_1886at 1996.078 kb on - strand, within Ga0059261_1886at 1996.078 kb on - strandat 1996.182 kb on + strand, within Ga0059261_1886at 1996.183 kb on - strand, within Ga0059261_1886at 1996.183 kb on - strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.272 kb on + strand, within Ga0059261_1886at 1996.273 kb on - strandat 1996.273 kb on - strand, within Ga0059261_1886at 1996.273 kb on - strand, within Ga0059261_1886at 1996.273 kb on - strand, within Ga0059261_1886at 1996.879 kb on + strand, within Ga0059261_1887at 1996.879 kb on + strand, within Ga0059261_1887at 1996.879 kb on + strand, within Ga0059261_1887at 1996.880 kb on - strand, within Ga0059261_1887at 1996.880 kb on - strandat 1996.880 kb on - strand, within Ga0059261_1887at 1996.937 kb on + strand, within Ga0059261_1887at 1996.938 kb on - strand, within Ga0059261_1887at 1996.938 kb on - strand, within Ga0059261_1887at 1996.938 kb on - strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.994 kb on + strand, within Ga0059261_1887at 1996.995 kb on - strand, within Ga0059261_1887at 1996.995 kb on - strand, within Ga0059261_1887at 1997.054 kb on + strand, within Ga0059261_1887at 1997.054 kb on + strand, within Ga0059261_1887at 1997.054 kb on + strand, within Ga0059261_1887at 1997.055 kb on - strand, within Ga0059261_1887at 1997.055 kb on - strand, within Ga0059261_1887at 1997.055 kb on - strand, within Ga0059261_1887at 1997.074 kb on + strand, within Ga0059261_1887at 1997.075 kb on - strand, within Ga0059261_1887at 1998.017 kb on + strandat 1998.018 kb on - strandat 1998.018 kb on - strandat 1998.018 kb on - strandat 1998.029 kb on + strandat 1998.030 kb on - strandat 1998.030 kb on - strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.081 kb on + strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.082 kb on - strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.128 kb on + strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.129 kb on - strandat 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strandat 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.179 kb on + strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.180 kb on - strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.287 kb on + strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.288 kb on - strand, within Ga0059261_1889at 1998.296 kb on + strand, within Ga0059261_1889at 1998.296 kb on + strand, within Ga0059261_1889at 1998.296 kb on + strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.297 kb on - strand, within Ga0059261_1889at 1998.434 kb on + strand, within Ga0059261_1889at 1998.434 kb on + strand, within Ga0059261_1889at 1998.435 kb on - strand, within Ga0059261_1889at 1998.435 kb on - strand, within Ga0059261_1889at 1998.435 kb on - strand, within Ga0059261_1889

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,995,813 + Ga0059261_1886 0.10 -0.1
1,995,814 - Ga0059261_1886 0.10 -1.3
1,995,876 + Ga0059261_1886 0.18 +2.0
1,995,876 + Ga0059261_1886 0.18 +0.0
1,995,877 - Ga0059261_1886 0.18 +0.2
1,995,877 - Ga0059261_1886 0.18 -0.9
1,995,877 - Ga0059261_1886 0.18 +0.5
1,996,077 + Ga0059261_1886 0.44 +0.4
1,996,077 + Ga0059261_1886 0.44 +0.1
1,996,077 + Ga0059261_1886 0.44 -0.8
1,996,077 + Ga0059261_1886 0.44 +0.7
1,996,077 + Ga0059261_1886 0.44 +0.8
1,996,077 + Ga0059261_1886 0.44 -0.6
1,996,078 - Ga0059261_1886 0.44 -0.3
1,996,078 - Ga0059261_1886 0.44 +0.0
1,996,078 - +1.5
1,996,182 + Ga0059261_1886 0.57 +0.5
1,996,183 - Ga0059261_1886 0.57 -2.8
1,996,183 - Ga0059261_1886 0.57 +0.6
1,996,272 + Ga0059261_1886 0.68 -0.1
1,996,272 + Ga0059261_1886 0.68 +1.1
1,996,272 + Ga0059261_1886 0.68 -0.4
1,996,272 + Ga0059261_1886 0.68 +0.0
1,996,272 + Ga0059261_1886 0.68 +0.7
1,996,272 + Ga0059261_1886 0.68 -0.7
1,996,273 - +4.1
1,996,273 - Ga0059261_1886 0.68 +0.4
1,996,273 - Ga0059261_1886 0.68 +0.4
1,996,273 - Ga0059261_1886 0.68 +0.1
1,996,879 + Ga0059261_1887 0.39 -0.8
1,996,879 + Ga0059261_1887 0.39 +0.9
1,996,879 + Ga0059261_1887 0.39 -1.1
1,996,880 - Ga0059261_1887 0.39 -1.0
1,996,880 - +0.5
1,996,880 - Ga0059261_1887 0.39 +0.5
1,996,937 + Ga0059261_1887 0.45 -0.5
1,996,938 - Ga0059261_1887 0.45 -0.2
1,996,938 - Ga0059261_1887 0.45 -0.5
1,996,938 - Ga0059261_1887 0.45 -2.1
1,996,994 + Ga0059261_1887 0.51 -1.1
1,996,994 + Ga0059261_1887 0.51 -0.9
1,996,994 + Ga0059261_1887 0.51 -1.9
1,996,994 + Ga0059261_1887 0.51 -0.7
1,996,995 - Ga0059261_1887 0.51 -0.9
1,996,995 - Ga0059261_1887 0.51 +0.1
1,997,054 + Ga0059261_1887 0.58 -0.7
1,997,054 + Ga0059261_1887 0.58 -0.7
1,997,054 + Ga0059261_1887 0.58 +0.5
1,997,055 - Ga0059261_1887 0.58 -1.2
1,997,055 - Ga0059261_1887 0.58 -1.3
1,997,055 - Ga0059261_1887 0.58 -2.4
1,997,074 + Ga0059261_1887 0.60 -1.4
1,997,075 - Ga0059261_1887 0.60 -0.9
1,998,017 + -0.2
1,998,018 - -1.1
1,998,018 - -0.2
1,998,018 - -0.9
1,998,029 + -0.3
1,998,030 - +0.5
1,998,030 - +1.5
1,998,081 + -1.1
1,998,081 + -0.1
1,998,081 + +1.5
1,998,081 + -0.5
1,998,081 + -0.1
1,998,081 + +2.1
1,998,082 - -0.3
1,998,082 - +0.0
1,998,082 - +0.3
1,998,082 - +0.7
1,998,082 - -0.6
1,998,128 + -0.2
1,998,128 + -1.2
1,998,128 + +0.5
1,998,128 + +0.9
1,998,128 + -0.9
1,998,128 + -0.7
1,998,128 + +0.5
1,998,128 + +0.3
1,998,128 + -0.9
1,998,129 - -0.2
1,998,129 - -0.5
1,998,129 - +0.1
1,998,129 - -0.2
1,998,129 - -0.5
1,998,129 - -0.2
1,998,129 - +0.2
1,998,129 - -0.8
1,998,129 - +0.2
1,998,179 + Ga0059261_1889 0.11 +0.0
1,998,179 + Ga0059261_1889 0.11 +1.3
1,998,179 + Ga0059261_1889 0.11 -0.8
1,998,179 + Ga0059261_1889 0.11 +0.5
1,998,179 + Ga0059261_1889 0.11 -0.7
1,998,179 + Ga0059261_1889 0.11 -0.1
1,998,179 + Ga0059261_1889 0.11 -0.7
1,998,179 + Ga0059261_1889 0.11 +0.1
1,998,179 + Ga0059261_1889 0.11 -0.4
1,998,179 + Ga0059261_1889 0.11 +0.7
1,998,179 + Ga0059261_1889 0.11 +0.7
1,998,179 + Ga0059261_1889 0.11 -0.6
1,998,179 + Ga0059261_1889 0.11 +0.8
1,998,179 + Ga0059261_1889 0.11 +1.2
1,998,179 + Ga0059261_1889 0.11 +0.9
1,998,179 + Ga0059261_1889 0.11 +0.4
1,998,179 + Ga0059261_1889 0.11 -2.2
1,998,179 + Ga0059261_1889 0.11 +1.2
1,998,179 + +0.5
1,998,179 + Ga0059261_1889 0.11 -0.7
1,998,179 + Ga0059261_1889 0.11 +0.0
1,998,179 + Ga0059261_1889 0.11 +0.0
1,998,179 + Ga0059261_1889 0.11 -1.3
1,998,179 + Ga0059261_1889 0.11 +0.5
1,998,179 + Ga0059261_1889 0.11 -1.4
1,998,179 + Ga0059261_1889 0.11 -1.5
1,998,180 - Ga0059261_1889 0.11 -1.7
1,998,180 - Ga0059261_1889 0.11 -0.5
1,998,180 - Ga0059261_1889 0.11 -0.4
1,998,180 - Ga0059261_1889 0.11 -1.4
1,998,180 - Ga0059261_1889 0.11 +0.7
1,998,180 - Ga0059261_1889 0.11 +0.1
1,998,180 - Ga0059261_1889 0.11 +0.5
1,998,180 - Ga0059261_1889 0.11 +0.4
1,998,180 - Ga0059261_1889 0.11 +0.9
1,998,180 - Ga0059261_1889 0.11 -1.3
1,998,180 - Ga0059261_1889 0.11 +0.7
1,998,180 - Ga0059261_1889 0.11 -0.2
1,998,180 - Ga0059261_1889 0.11 +0.3
1,998,180 - Ga0059261_1889 0.11 +0.4
1,998,180 - Ga0059261_1889 0.11 +0.4
1,998,180 - Ga0059261_1889 0.11 +1.2
1,998,180 - Ga0059261_1889 0.11 -0.1
1,998,180 - Ga0059261_1889 0.11 +0.1
1,998,287 + Ga0059261_1889 0.20 -1.3
1,998,287 + Ga0059261_1889 0.20 +0.2
1,998,287 + Ga0059261_1889 0.20 -0.5
1,998,287 + Ga0059261_1889 0.20 +0.5
1,998,287 + Ga0059261_1889 0.20 -0.1
1,998,288 - Ga0059261_1889 0.21 -0.4
1,998,288 - Ga0059261_1889 0.21 +0.6
1,998,288 - Ga0059261_1889 0.21 -0.3
1,998,288 - Ga0059261_1889 0.21 -1.1
1,998,288 - Ga0059261_1889 0.21 -0.7
1,998,288 - Ga0059261_1889 0.21 +0.5
1,998,288 - Ga0059261_1889 0.21 -0.0
1,998,288 - Ga0059261_1889 0.21 -0.1
1,998,296 + Ga0059261_1889 0.21 -2.0
1,998,296 + Ga0059261_1889 0.21 -0.2
1,998,296 + Ga0059261_1889 0.21 -0.2
1,998,297 - Ga0059261_1889 0.21 +0.1
1,998,297 - Ga0059261_1889 0.21 +0.8
1,998,297 - Ga0059261_1889 0.21 +0.2
1,998,297 - Ga0059261_1889 0.21 -0.2
1,998,434 + Ga0059261_1889 0.34 -1.1
1,998,434 + Ga0059261_1889 0.34 -0.2
1,998,435 - Ga0059261_1889 0.34 -0.3
1,998,435 - Ga0059261_1889 0.34 -0.0
1,998,435 - Ga0059261_1889 0.34 -0.1

Or see this region's nucleotide sequence