Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0089

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0086 and Ga0059261_0087 are separated by 15 nucleotidesGa0059261_0087 and Ga0059261_0088 are separated by 158 nucleotidesGa0059261_0088 and Ga0059261_0089 are separated by 70 nucleotidesGa0059261_0089 and Ga0059261_0090 are separated by 136 nucleotides Ga0059261_0086: Ga0059261_0086 - hypothetical protein, at 79,412 to 80,038 _0086 Ga0059261_0087: Ga0059261_0087 - hypothetical protein, at 80,054 to 80,242 _0087 Ga0059261_0088: Ga0059261_0088 - tRNA, at 80,401 to 80,485 _0088 Ga0059261_0089: Ga0059261_0089 - trigger factor, at 80,556 to 82,166 _0089 Ga0059261_0090: Ga0059261_0090 - Glycosyltransferases involved in cell wall biogenesis, at 82,303 to 83,232 _0090 Position (kb) 80 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 79.576 kb on + strand, within Ga0059261_0086at 79.585 kb on + strand, within Ga0059261_0086at 79.585 kb on + strand, within Ga0059261_0086at 79.585 kb on + strand, within Ga0059261_0086at 79.585 kb on + strand, within Ga0059261_0086at 79.585 kb on + strand, within Ga0059261_0086at 79.610 kb on + strand, within Ga0059261_0086at 79.610 kb on + strand, within Ga0059261_0086at 79.611 kb on - strand, within Ga0059261_0086at 79.668 kb on + strand, within Ga0059261_0086at 79.699 kb on + strand, within Ga0059261_0086at 79.739 kb on + strand, within Ga0059261_0086at 79.740 kb on - strand, within Ga0059261_0086at 79.771 kb on + strand, within Ga0059261_0086at 79.772 kb on - strand, within Ga0059261_0086at 79.772 kb on - strand, within Ga0059261_0086at 79.865 kb on + strand, within Ga0059261_0086at 79.865 kb on + strand, within Ga0059261_0086at 79.865 kb on + strand, within Ga0059261_0086at 79.866 kb on - strand, within Ga0059261_0086at 79.917 kb on + strandat 79.917 kb on + strand, within Ga0059261_0086at 79.927 kb on + strand, within Ga0059261_0086at 79.933 kb on + strand, within Ga0059261_0086at 79.934 kb on - strand, within Ga0059261_0086at 79.934 kb on - strand, within Ga0059261_0086at 79.934 kb on - strand, within Ga0059261_0086at 79.934 kb on - strand, within Ga0059261_0086at 79.934 kb on - strand, within Ga0059261_0086at 79.934 kb on - strand, within Ga0059261_0086at 79.934 kb on - strandat 79.934 kb on - strand, within Ga0059261_0086at 79.956 kb on + strand, within Ga0059261_0086at 79.956 kb on + strand, within Ga0059261_0086at 79.957 kb on - strand, within Ga0059261_0086at 79.969 kb on + strand, within Ga0059261_0086at 79.969 kb on + strand, within Ga0059261_0086at 79.969 kb on + strand, within Ga0059261_0086at 79.970 kb on - strand, within Ga0059261_0086at 79.970 kb on - strand, within Ga0059261_0086at 79.970 kb on - strand, within Ga0059261_0086at 79.970 kb on - strand, within Ga0059261_0086at 79.970 kb on - strand, within Ga0059261_0086at 79.975 kb on + strand, within Ga0059261_0086at 79.976 kb on - strandat 80.012 kb on + strandat 80.013 kb on - strandat 80.049 kb on + strandat 80.100 kb on - strand, within Ga0059261_0087at 80.111 kb on + strand, within Ga0059261_0087at 80.112 kb on - strand, within Ga0059261_0087at 80.368 kb on + strandat 80.368 kb on + strandat 80.368 kb on + strandat 80.370 kb on + strandat 80.370 kb on + strandat 80.599 kb on - strandat 80.624 kb on + strandat 81.225 kb on + strand, within Ga0059261_0089at 81.236 kb on + strand, within Ga0059261_0089at 81.408 kb on - strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strandat 81.411 kb on + strandat 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.413 kb on + strand, within Ga0059261_0089at 81.413 kb on + strand, within Ga0059261_0089at 81.413 kb on + strand, within Ga0059261_0089at 81.414 kb on - strand, within Ga0059261_0089at 81.558 kb on + strand, within Ga0059261_0089at 81.705 kb on + strand, within Ga0059261_0089at 81.705 kb on + strand, within Ga0059261_0089at 81.706 kb on - strand, within Ga0059261_0089at 81.738 kb on + strand, within Ga0059261_0089at 81.738 kb on + strand, within Ga0059261_0089at 81.739 kb on - strand, within Ga0059261_0089at 81.739 kb on - strandat 81.786 kb on + strand, within Ga0059261_0089at 82.164 kb on + strandat 82.164 kb on + strandat 82.164 kb on + strandat 82.165 kb on - strandat 82.165 kb on - strandat 82.165 kb on - strandat 82.245 kb on + strandat 82.246 kb on - strandat 82.291 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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79,576 + Ga0059261_0086 0.26 +0.5
79,585 + Ga0059261_0086 0.28 -0.7
79,585 + Ga0059261_0086 0.28 +0.6
79,585 + Ga0059261_0086 0.28 +1.4
79,585 + Ga0059261_0086 0.28 +0.0
79,585 + Ga0059261_0086 0.28 +0.1
79,610 + Ga0059261_0086 0.32 -0.7
79,610 + Ga0059261_0086 0.32 +0.7
79,611 - Ga0059261_0086 0.32 -0.7
79,668 + Ga0059261_0086 0.41 +1.2
79,699 + Ga0059261_0086 0.46 +0.9
79,739 + Ga0059261_0086 0.52 -0.2
79,740 - Ga0059261_0086 0.52 +0.3
79,771 + Ga0059261_0086 0.57 -2.3
79,772 - Ga0059261_0086 0.57 -1.1
79,772 - Ga0059261_0086 0.57 -0.2
79,865 + Ga0059261_0086 0.72 +0.7
79,865 + Ga0059261_0086 0.72 +1.0
79,865 + Ga0059261_0086 0.72 +0.1
79,866 - Ga0059261_0086 0.72 +0.3
79,917 + -0.4
79,917 + Ga0059261_0086 0.81 +0.1
79,927 + Ga0059261_0086 0.82 +0.7
79,933 + Ga0059261_0086 0.83 +0.1
79,934 - Ga0059261_0086 0.83 +0.5
79,934 - Ga0059261_0086 0.83 -1.0
79,934 - Ga0059261_0086 0.83 -0.3
79,934 - Ga0059261_0086 0.83 +1.2
79,934 - Ga0059261_0086 0.83 +1.0
79,934 - Ga0059261_0086 0.83 -0.8
79,934 - +1.9
79,934 - Ga0059261_0086 0.83 -0.6
79,956 + Ga0059261_0086 0.87 +0.4
79,956 + Ga0059261_0086 0.87 +1.5
79,957 - Ga0059261_0086 0.87 +0.6
79,969 + Ga0059261_0086 0.89 +0.3
79,969 + Ga0059261_0086 0.89 +1.3
79,969 + Ga0059261_0086 0.89 +1.9
79,970 - Ga0059261_0086 0.89 +0.0
79,970 - Ga0059261_0086 0.89 -0.1
79,970 - Ga0059261_0086 0.89 -0.8
79,970 - Ga0059261_0086 0.89 -0.2
79,970 - Ga0059261_0086 0.89 -0.9
79,975 + Ga0059261_0086 0.90 +0.9
79,976 - +1.1
80,012 + +0.2
80,013 - +0.3
80,049 + +1.0
80,100 - Ga0059261_0087 0.24 +0.2
80,111 + Ga0059261_0087 0.30 -1.2
80,112 - Ga0059261_0087 0.31 +0.5
80,368 + -0.6
80,368 + -3.1
80,368 + +1.2
80,370 + -1.9
80,370 + -0.4
80,599 - -0.1
80,624 + -2.1
81,225 + Ga0059261_0089 0.42 +0.7
81,236 + Ga0059261_0089 0.42 -2.4
81,408 - Ga0059261_0089 0.53 -0.4
81,411 + Ga0059261_0089 0.53 -0.7
81,411 + Ga0059261_0089 0.53 -0.9
81,411 + Ga0059261_0089 0.53 +0.5
81,411 + +0.3
81,411 + +2.3
81,411 + Ga0059261_0089 0.53 -1.7
81,411 + Ga0059261_0089 0.53 -1.4
81,411 + Ga0059261_0089 0.53 -1.3
81,411 + Ga0059261_0089 0.53 +0.3
81,412 - Ga0059261_0089 0.53 -0.7
81,412 - Ga0059261_0089 0.53 -0.7
81,412 - Ga0059261_0089 0.53 +0.3
81,412 - Ga0059261_0089 0.53 -0.9
81,412 - Ga0059261_0089 0.53 -1.0
81,413 + Ga0059261_0089 0.53 -2.3
81,413 + Ga0059261_0089 0.53 -1.7
81,413 + Ga0059261_0089 0.53 -0.9
81,414 - Ga0059261_0089 0.53 -0.7
81,558 + Ga0059261_0089 0.62 +0.6
81,705 + Ga0059261_0089 0.71 -1.6
81,705 + Ga0059261_0089 0.71 -1.1
81,706 - Ga0059261_0089 0.71 -1.6
81,738 + Ga0059261_0089 0.73 -0.7
81,738 + Ga0059261_0089 0.73 -1.9
81,739 - Ga0059261_0089 0.73 +0.7
81,739 - +0.3
81,786 + Ga0059261_0089 0.76 -0.1
82,164 + +0.9
82,164 + +1.2
82,164 + +1.6
82,165 - +1.1
82,165 - -0.6
82,165 - +0.6
82,245 + -1.1
82,246 - +1.9
82,291 + +0.3

Or see this region's nucleotide sequence